FvH4_3g39120

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012341
Physical Location & Seq
Reverse (-)
33329935 .. 33332946
3012 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39120.t2

Sequence Viewer

Length: 1200 bp
ATGGGGTTAAAGGAAGCTGAAATCCGATGCTACGATGGTGAAGCAGATAGAGCTAGAGTGGAAGACCTTGAACGAAGATGCGAGGTAGGACCAACGGAGCGAGTGTATCTCTTCACAGACACTATGGGTGACCCCATATGTAGGATCCGAAACAGTCCGATGCACAAGATGCTGGTGGCCGAGCTGGACAACCAGTTGGTTGGAGTCATTCAAGGCTCGATAAAGTGGGTGACGGTTCATAATAAACCGCCGCCTGGACAGCATGAGGCCAATCTGTCCAGAGTGGGCTACATCCTCGGCCTGAGGGTGGCACCACTCCATCGTCAAAAAGGAATTGGTTCCAGACTGGTGTGTTGTTTAGAGGATTGGTTCGTAGCCAACGACGTAGATTACGCATACATGGCTACCGAGAAGGACAACGAAGCTTCAGTCAGGCTTTTCATGGAGAAGTTTGGCTACATCAAGTTCAGGACACCTGCGATTCTTGTAAACCCAGTTCGTTACCGGCCTCGCCACGTCTCTTCCGACGTTGAAATCGCTAAGCTCAAGGTAGAAGAAGCTGAGTTTCTATACAGAAACTGTATGGCTTCCACTGATTTCTTTCCCCATGACATAGACAAGGTGCTTGGGAACAAACTGAGCTTGGGGACTTGGGTGGCTTATCCAAGAGGAGAGTCGTTTTGCAAGTTTGGGTCAAATGGGGAAGCTATACCAAAGAGTTGGGCTATGATTAGTGTATGGAACAGCGGTGAGGTTTTCACACTGAGGCTAGGGAAGGCACCACTGTCTTGTCTGTTGTATGCAAAAAGCTGGAGACTGATGGATAGGTTTTTGCCTTGCTTTAAGTTACTGCCTTCCATGCCTGATTTTTTCAACCCTTTTGGGTTTTACTTCATGTATGGGGTGTACCATGAAGGACCATTGTCAGGGAAACTGGTGAGGAATTTGTGCCACTTTGTGCACAACATGGCTAAAACTACAACTAAGAACTACTGCTGCAAAGTTGTAGTAACAGAAGTTGGGGGTTGTGACTCGGTACTAAGACATAACATCCCACATTGGAAGTTGCTCTCTTGCTCTGAGGATTTGTGGTGCATAAAAGCCATGAAGATGAATGAAGCAGACAGAACCAGCCTTCATGAATTGACTAAAACCCAACAAACAAATAAAGCTCTTTTTGTAGACCCAAGAGAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

400

Amino Acids

45.64

Weight (kDa)

8.52

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 43 - 153 2.9e-15 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 55 - 154 3.8e-07 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30090
fragaria_vesca FvH4_3g39120 FvH4_3g39120
malus_domestica MD03G1064100.v1.1 MD11G1067900.v1.1
prunus_persica Prupe.6G053400_v2.0.a1
pyrus_communis pycom03g05160 pycom11g05700
rosa_chinensis RchiOBHm_Chr5g0070491
rosa_laevigata RLG00000036137
rosa_multiflora Rmu_sc0005708.1_g000009
rosa_roxburghii Rroxscaffold_1G00010740
rosa_rugosa Rorug05G0406200 Rorug05G0406300
rosa_samantha Rh5AG461400 Rh5BG479700 Rh5CG503900 Rh5DG492000
rosa_wichuraiana Rw5G043020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 484
Acc36I ACCTGC 1 cut(s) 484
AccB1I GGYRCC 2 cut(s) 310, 778
AccI GTMKAC 1 cut(s) 1182
AciI CCGC 3 cut(s) 248, 251, 747
AclWI GGATC 2 cut(s) 139, 152
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 943
AcuI CTGAAG 1 cut(s) 411
AdeI CACNNNGTG 1 cut(s) 958
AfaI GTAC 2 cut(s) 908, 1038
AfiI CCNNNNNNNGG 5 cut(s) 141, 254, 307, 926, 1192
AgsI TTSAA 4 cut(s) 71, 212, 533, 874
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 963
Alw26I GTCTC 2 cut(s) 523, 808
Alw44I GTGCAC 1 cut(s) 959
AlwI GGATC 2 cut(s) 139, 152
AlwNI CAGNNNCTG 1 cut(s) 579
AoxI GGCC 4 cut(s) 177, 267, 298, 506
ApaLI GTGCAC 1 cut(s) 959
ApeKI GCWGC 1 cut(s) 996
ApoI RAATTY 1 cut(s) 943
ArsI GACNNNNNNTTYG 2 cut(s) 414, 446
Asp700I GAANNNNTTC 1 cut(s) 337
AspS9I GGNCC 2 cut(s) 89, 917
AsuHPI GGTGA 5 cut(s) 50, 140, 241, 761, 949
AvaII GGWCC 2 cut(s) 89, 917
AxyI CCTNAGG 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 963
BamHI GGATCC 1 cut(s) 144
BanI GGYRCC 2 cut(s) 310, 778
BarI GAAGNNNNNNTAC 2 cut(s) 440, 472
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 963
BbvI GCAGC 1 cut(s) 983
BccI CCATC 3 cut(s) 29, 327, 814
BciT130I CCWGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 523, 808
BfaI CTAG 2 cut(s) 54, 770
BfuAI ACCTGC 1 cut(s) 484
BisI GCNGC 2 cut(s) 251, 997
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 2 cut(s) 252, 998
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 2 cut(s) 89, 917
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 2 cut(s) 89, 917
BmiI GGNNCC 4 cut(s) 146, 312, 340, 780
BmrFI CCNGG 1 cut(s) 255
BmrI ACTGGG 1 cut(s) 488
BmsI GCATC 4 cut(s) 17, 68, 150, 159
BmuI ACTGGG 1 cut(s) 488
BoxI GACNNNNGTC 1 cut(s) 922
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpmI CTGGAG 1 cut(s) 832
Bpu1102I GCTNAGC 1 cut(s) 540
BpuEI CTTGAG 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 5 cut(s) 141, 254, 307, 926, 1192
Bse118I RCCGGY 1 cut(s) 504
Bse1I ACTGG 4 cut(s) 193, 351, 494, 939
Bse21I CCTNAGG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 2 cut(s) 291, 1050
BseLI CCNNNNNNNGG 5 cut(s) 141, 254, 307, 926, 1192
BseMII CTCAG 5 cut(s) 293, 552, 629, 755, 1071
BseNI ACTGG 4 cut(s) 193, 351, 494, 939
BseRI GAGGAG 1 cut(s) 684
BseSI GKGCMC 1 cut(s) 963
BseXI GCAGC 1 cut(s) 983
BshFI GGCC 4 cut(s) 179, 269, 300, 508
BshNI GGYRCC 2 cut(s) 310, 778
BsiHKAI GWGCWC 1 cut(s) 963
BsiSI CCGG 1 cut(s) 505
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 5 cut(s) 141, 254, 307, 926, 1192
BsmAI GTCTC 2 cut(s) 523, 808
BsmBI CGTCTC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 661
BsnI GGCC 4 cut(s) 179, 269, 300, 508
Bsp1286I GDGCHC 1 cut(s) 963
Bsp143I GATC 1 cut(s) 144
Bsp1720I GCTNAGC 1 cut(s) 540
BspACI CCGC 3 cut(s) 248, 251, 747
BspANI GGCC 4 cut(s) 179, 269, 300, 508
BspCNI CTCAG 5 cut(s) 294, 553, 630, 756, 1072
BspHI TCATGA 1 cut(s) 1138
BspLI GGNNCC 4 cut(s) 146, 312, 340, 780
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 2 cut(s) 139, 152
BspT107I GGYRCC 2 cut(s) 310, 778
BsrFI RCCGGY 1 cut(s) 504
BsrI ACTGG 4 cut(s) 193, 351, 494, 939
BssAI RCCGGY 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 4 cut(s) 155, 235, 581, 786
Bst6I CTCTTC 2 cut(s) 116, 526
BstAPI GCANNNNNTGC 1 cut(s) 169
BstDEI CTNAG 8 cut(s) 302, 540, 561, 638, 764, 984, 1040, 1080
BstEII GGTNACC 1 cut(s) 128
BstF5I GGATG 2 cut(s) 291, 1050
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 2 cut(s) 523, 808
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 5 cut(s) 50, 169, 259, 401, 859
BstNI CCWGG 1 cut(s) 255
BstPAI GACNNNNGTC 1 cut(s) 922
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 963
BstV1I GCAGC 1 cut(s) 983
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 144
BstXI CCANNNNNNTGG 2 cut(s) 200, 720
BstYI RGATCY 1 cut(s) 144
Bsu36I CCTNAGG 1 cut(s) 302
BsuRI GGCC 4 cut(s) 179, 269, 300, 508
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 2 cut(s) 291, 1050
BtsIMutI CAGTG 3 cut(s) 591, 761, 782
BveI ACCTGC 1 cut(s) 484
CaiI CAGNNNCTG 1 cut(s) 579
CciI TCATGA 1 cut(s) 1138
Cfr10I RCCGGY 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 89, 917
Csp6I GTAC 2 cut(s) 907, 1037
CviQI GTAC 2 cut(s) 907, 1037
DdeI CTNAG 8 cut(s) 302, 540, 561, 638, 764, 984, 1040, 1080
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
DraIII CACNNNGTG 1 cut(s) 958
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 116, 526
EarI CTCTTC 2 cut(s) 116, 526
Eco47I GGWCC 2 cut(s) 89, 917
Eco57I CTGAAG 1 cut(s) 411
Eco81I CCTNAGG 1 cut(s) 302
Eco91I GGTNACC 1 cut(s) 128
EcoO65I GGTNACC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 523
FaqI GGGAC 1 cut(s) 661
FauNDI CATATG 1 cut(s) 137
FblI GTMKAC 1 cut(s) 1182
Fnu4HI GCNGC 2 cut(s) 251, 997
FokI GGATG 2 cut(s) 278, 1037
Fsp4HI GCNGC 2 cut(s) 251, 997
FspBI CTAG 2 cut(s) 54, 770
GluI GCNGC 2 cut(s) 251, 997
GsuI CTGGAG 1 cut(s) 832
HaeIII GGCC 4 cut(s) 179, 269, 300, 508
HapII CCGG 1 cut(s) 505
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 4 cut(s) 204, 481, 674, 1031
HpaII CCGG 1 cut(s) 505
HphI GGTGA 5 cut(s) 50, 140, 241, 761, 949
Hpy166II GTNNAC 4 cut(s) 490, 907, 961, 1183
Hpy188I TCNGA 5 cut(s) 26, 149, 159, 526, 1081
Hpy188III TCNNGA 4 cut(s) 279, 342, 469, 1139
Hpy8I GTNNAC 4 cut(s) 490, 907, 961, 1183
Hpy99I CGWCG 2 cut(s) 386, 530
HpyAV CCTTC 5 cut(s) 406, 769, 864, 908, 1145
HpyCH4III ACNGT 4 cut(s) 155, 235, 581, 786
HpyCH4IV ACGT 3 cut(s) 384, 516, 528
HpyCH4V TGCA 6 cut(s) 163, 684, 803, 961, 999, 1095
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 169, 259, 401, 859
HpyF3I CTNAG 8 cut(s) 302, 540, 561, 638, 764, 984, 1040, 1080
HpySE526I ACGT 3 cut(s) 384, 516, 528
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 97
Lsp1109I GCAGC 1 cut(s) 983
LweI GCATC 4 cut(s) 17, 68, 150, 159
MaeI CTAG 2 cut(s) 54, 770
MaeII ACGT 3 cut(s) 384, 516, 528
MaeIII GTNAC 6 cut(s) 128, 229, 500, 846, 1009, 1028
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 6 cut(s) 74, 87, 103, 513, 566, 1120
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 1 cut(s) 963
MluCI AATT 3 cut(s) 333, 943, 1142
MlyI GAGTC 3 cut(s) 213, 683, 1025
MmeI TCCRAC 2 cut(s) 181, 549
MroXI GAANNNNTTC 1 cut(s) 337
MseI TTAA 2 cut(s) 8, 843
MslI CAYNNNNRTG 1 cut(s) 1109
MspA1I CMGCKG 1 cut(s) 747
MspI CCGG 1 cut(s) 505
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 5 cut(s) 50, 169, 259, 401, 859
NdeI CATATG 1 cut(s) 137
NdeII GATC 1 cut(s) 144
NlaIV GGNNCC 4 cut(s) 146, 312, 340, 780
NmeAIII GCCGAG 2 cut(s) 205, 276
NmuCI GTSAC 3 cut(s) 128, 229, 1028
PagI TCATGA 1 cut(s) 1138
PaqCI CACCTGC 1 cut(s) 484
PcsI WCGNNNNNNNCGW 2 cut(s) 378, 522
PdmI GAANNNNTTC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 481
PkrI GCNGC 2 cut(s) 252, 998
PleI GAGTC 3 cut(s) 212, 682, 1025
PpsI GAGTC 3 cut(s) 212, 682, 1025
PshAI GACNNNNGTC 1 cut(s) 922
Psp6I CCWGG 1 cut(s) 253
PspEI GGTNACC 1 cut(s) 128
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 4 cut(s) 146, 312, 340, 780
PspPI GGNCC 2 cut(s) 89, 917
PsrI GAACNNNNNNTAC 2 cut(s) 480, 512
PstNI CAGNNNCTG 1 cut(s) 579
PsuI RGATCY 1 cut(s) 144
RsaI GTAC 2 cut(s) 908, 1038
RsaNI GTAC 2 cut(s) 907, 1037
RseI CAYNNNNRTG 1 cut(s) 1109
SaqAI TTAA 2 cut(s) 8, 843
SatI GCNGC 2 cut(s) 251, 997
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 2 cut(s) 89, 917
SchI GAGTC 3 cut(s) 213, 683, 1025
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 963
SfaNI GCATC 4 cut(s) 17, 68, 150, 159
SinI GGWCC 2 cut(s) 89, 917
SmiMI CAYNNNNRTG 1 cut(s) 1109
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 3 cut(s) 333, 943, 1142
SsiI CCGC 3 cut(s) 248, 251, 747
SspMI CTAG 2 cut(s) 54, 770
StyD4I CCNGG 1 cut(s) 253
TaaI ACNGT 4 cut(s) 155, 235, 581, 786
TaiI ACGT 3 cut(s) 387, 519, 531
TaqI TCGA 1 cut(s) 218
TasI AATT 3 cut(s) 333, 943, 1142
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 2 cut(s) 8, 843
Tru9I TTAA 2 cut(s) 8, 843
TscAI CASTG 3 cut(s) 598, 768, 789
TseFI GTSAC 3 cut(s) 128, 229, 1028
TseI GCWGC 1 cut(s) 996
Tsp45I GTSAC 3 cut(s) 128, 229, 1028
TspDTI ATGAA 9 cut(s) 227, 430, 883, 927, 1121, 1127, 1127, 1131, 1155
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 3 cut(s) 598, 768, 789
VneI GTGCAC 1 cut(s) 959
VpaK11BI GGWCC 2 cut(s) 89, 917
XapI RAATTY 1 cut(s) 943
XmiI GTMKAC 1 cut(s) 1182
XmnI GAANNNNTTC 1 cut(s) 337
XspI CTAG 2 cut(s) 54, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.