Rroxscaffold_1G00010740

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012341
Physical Location & Seq
Forward (+)
13685629 .. 13688633
3005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010740.1

Sequence Viewer

Length: 843 bp
ATGGGATTAAAGGAGGCTGTAATTCGAAGCTATGATGGTGAAGCGGATAGAGCTAGAGTGGAAGACCTTGAACGAAGATGCGAGGTAGGACCAACGGAGCGAGTATATCTCTTCACAGACACTATGGGTGACCCCATATGTAGGATCCGGAACAGTCCGATGCACAAGATGCTGGTGGCCGAGTTGGACAACCAGTTGGTTGGAGTCATTCAAGGCTCGATAAAGTTGGTGACGGTTCATAATAAGCCGCCGCCTAGAGATCATGAGGCCAATCTGGCCAGAGTGGGCTACATCCTCGGCCTGAGGGTCGCACCATTCCATCGTCAAAAAGGGATTGGTTCCAGACTGGTGTGTTGTTTAGAGGATTGGTTCTTAGCCAACGACGTAGATTACTCATACATGGCCACCGAGAAAGACAACGAAGCTTCAGTCAGGCTTTTCATTGAGAAGTTTGGCTACATCAAGTTCAGGACCCCTGCAATTCTGGTAAACCCGGTTCGTTGCCGGCCCTGCCACGTCTCTTCCAACGTTGAAATCGCAAAGCTCAAGGTAGAAGAAGCTGAGTTTCTGTACAGAAAGTGTATGGCTTCCACTGATTTCTTTCCTCATGACATAAACAAAGTGCTTGGGAACAAACTGAGCTTGGGGACTTGGGTGGCCTATCCAAGAGGAGAGTTTGGCAATTTTGAATCAAATGGGCAAGCTCTACCAAAAAGTTGGGCTATGATTAGTGTATGGAACAGCGGTGAGGTTTTCAAATTGAGGCTAGGGAAGGCACCTCTGTCTTGTCTGTTGTACGCAAAAAGCTGGAGACTGATGGATAGGTTTTTGCCCTTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

280

Amino Acids

31.89

Weight (kDa)

8.85

Isoelectric Point (pI)

36.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 42 - 153 1.6e-14 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 55 - 154 5e-07 Acetyltransferase (GNAT) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30090
fragaria_vesca FvH4_3g39120 FvH4_3g39120
malus_domestica MD03G1064100.v1.1 MD11G1067900.v1.1
prunus_persica Prupe.6G053400_v2.0.a1
pyrus_communis pycom03g05160 pycom11g05700
rosa_chinensis RchiOBHm_Chr5g0070491
rosa_laevigata RLG00000036137
rosa_multiflora Rmu_sc0005708.1_g000009
rosa_roxburghii Rroxscaffold_1G00010740
rosa_rugosa Rorug05G0406200 Rorug05G0406300
rosa_samantha Rh5AG461400 Rh5BG479700 Rh5CG503900 Rh5DG492000
rosa_wichuraiana Rw5G043020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 775
AccIII TCCGGA 1 cut(s) 147
AciI CCGC 4 cut(s) 44, 248, 251, 744
AclI AACGTT 1 cut(s) 528
AclWI GGATC 2 cut(s) 139, 152
AcoI YGGCCR 3 cut(s) 177, 276, 402
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 2 cut(s) 572, 797
AfiI CCNNNNNNNGG 1 cut(s) 141
AgsI TTSAA 5 cut(s) 71, 212, 533, 689, 757
AjiI CACGTC 1 cut(s) 517
AluBI AGCT 8 cut(s) 30, 53, 425, 544, 560, 642, 704, 807
AluI AGCT 8 cut(s) 30, 53, 425, 544, 560, 642, 704, 807
Alw26I GTCTC 2 cut(s) 523, 805
AlwI GGATC 2 cut(s) 139, 152
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 7 cut(s) 177, 267, 276, 298, 402, 506, 657
ArsI GACNNNNNNTTYG 2 cut(s) 414, 446
AspS9I GGNCC 3 cut(s) 89, 471, 507
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 4 cut(s) 50, 140, 241, 758
AsuII TTCGAA 1 cut(s) 25
AvaII GGWCC 2 cut(s) 89, 471
AxyI CCTNAGG 1 cut(s) 302
BalI TGGCCA 2 cut(s) 278, 404
BamHI GGATCC 1 cut(s) 144
BanI GGYRCC 1 cut(s) 775
BarI GAAGNNNNNNTAC 2 cut(s) 440, 472
BbsI GAAGAC 1 cut(s) 69
BccI CCATC 3 cut(s) 29, 327, 811
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 2 cut(s) 523, 805
BfaI CTAG 3 cut(s) 54, 255, 767
BglI GCCNNNNNGGC 1 cut(s) 275
BisI GCNGC 2 cut(s) 248, 251
BlsI GCNGC 2 cut(s) 249, 252
Bme1390I CCNGG 1 cut(s) 494
Bme18I GGWCC 2 cut(s) 89, 471
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 3 cut(s) 89, 471, 507
BmiI GGNNCC 4 cut(s) 146, 340, 473, 777
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 3 cut(s) 68, 150, 159
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 93, 125
BpmI CTGGAG 1 cut(s) 829
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 504
Bse1I ACTGG 2 cut(s) 193, 351
Bse21I CCTNAGG 1 cut(s) 302
BseAI TCCGGA 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMII CTCAG 3 cut(s) 293, 552, 629
BseNI ACTGG 2 cut(s) 193, 351
BseRI GAGGAG 1 cut(s) 684
BshFI GGCC 7 cut(s) 179, 269, 278, 300, 404, 508, 659
BshNI GGYRCC 1 cut(s) 775
BsiSI CCGG 3 cut(s) 148, 494, 505
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 523, 805
BsmBI CGTCTC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 661
BsnI GGCC 7 cut(s) 179, 269, 278, 300, 404, 508, 659
Bsp119I TTCGAA 1 cut(s) 25
Bsp13I TCCGGA 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 2 cut(s) 144, 259
BspACI CCGC 4 cut(s) 44, 248, 251, 744
BspANI GGCC 7 cut(s) 179, 269, 278, 300, 404, 508, 659
BspCNI CTCAG 3 cut(s) 294, 553, 630
BspEI TCCGGA 1 cut(s) 147
BspHI TCATGA 2 cut(s) 262, 607
BspLI GGNNCC 4 cut(s) 146, 340, 473, 777
BspPI GGATC 2 cut(s) 139, 152
BspT104I TTCGAA 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 775
BsrFI RCCGGY 1 cut(s) 504
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 2 cut(s) 193, 351
BssAI RCCGGY 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 144, 259
Bst4CI ACNGT 2 cut(s) 155, 235
Bst6I CTCTTC 2 cut(s) 116, 526
BstAPI GCANNNNNTGC 1 cut(s) 169
BstAUI TGTACA 1 cut(s) 570
BstBI TTCGAA 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 506, 702
BstDEI CTNAG 4 cut(s) 302, 373, 561, 638
BstEII GGTNACC 1 cut(s) 128
BstF5I GGATG 1 cut(s) 291
BstKTI GATC 2 cut(s) 147, 262
BstMAI GTCTC 2 cut(s) 523, 805
BstMBI GATC 2 cut(s) 144, 259
BstMWI GCNNNNNNNGC 4 cut(s) 50, 169, 275, 510
BstPI GGTNACC 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 492
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 144
BstXI CCANNNNNNTGG 2 cut(s) 200, 717
BstYI RGATCY 1 cut(s) 144
Bsu36I CCTNAGG 1 cut(s) 302
BsuRI GGCC 7 cut(s) 179, 269, 278, 300, 404, 508, 659
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 2 cut(s) 506, 702
CciI TCATGA 2 cut(s) 262, 607
Cfr10I RCCGGY 1 cut(s) 504
Cfr13I GGNCC 3 cut(s) 89, 471, 507
Csp6I GTAC 2 cut(s) 571, 796
CviAII CATG 3 cut(s) 263, 400, 608
CviQI GTAC 2 cut(s) 571, 796
DdeI CTNAG 4 cut(s) 302, 373, 561, 638
DpnI GATC 2 cut(s) 146, 261
DpnII GATC 2 cut(s) 144, 259
EaeI YGGCCR 3 cut(s) 177, 276, 402
Eam1104I CTCTTC 2 cut(s) 116, 526
EarI CTCTTC 2 cut(s) 116, 526
Eco47I GGWCC 2 cut(s) 89, 471
Eco57I CTGAAG 1 cut(s) 411
Eco81I CCTNAGG 1 cut(s) 302
Eco91I GGTNACC 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 471
EcoO65I GGTNACC 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 523
FaeI CATG 3 cut(s) 266, 403, 611
FaqI GGGAC 1 cut(s) 661
FatI CATG 3 cut(s) 262, 399, 607
FauNDI CATATG 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 248, 251
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 2 cut(s) 248, 251
FspBI CTAG 3 cut(s) 54, 255, 767
GluI GCNGC 2 cut(s) 248, 251
GsuI CTGGAG 1 cut(s) 829
HaeIII GGCC 7 cut(s) 179, 269, 278, 300, 404, 508, 659
HapII CCGG 3 cut(s) 148, 494, 505
Hin1II CATG 3 cut(s) 266, 403, 611
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 2 cut(s) 204, 689
HpaII CCGG 3 cut(s) 148, 494, 505
HphI GGTGA 4 cut(s) 50, 140, 241, 758
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 5 cut(s) 148, 263, 342, 469, 608
Hpy8I GTNNAC 1 cut(s) 490
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 1 cut(s) 766
HpyCH4III ACNGT 2 cut(s) 155, 235
HpyCH4IV ACGT 3 cut(s) 384, 516, 528
HpyCH4V TGCA 2 cut(s) 163, 479
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 169, 275, 510
HpyF3I CTNAG 4 cut(s) 302, 373, 561, 638
HpySE526I ACGT 3 cut(s) 384, 516, 528
Hsp92II CATG 3 cut(s) 266, 403, 611
Kpn2I TCCGGA 1 cut(s) 147
KroI GCCGGC 1 cut(s) 504
KroNI GCCGGC 1 cut(s) 506
Kzo9I GATC 2 cut(s) 144, 259
LmnI GCTCC 1 cut(s) 97
LweI GCATC 3 cut(s) 68, 150, 159
MaeI CTAG 3 cut(s) 54, 255, 767
MaeII ACGT 3 cut(s) 384, 516, 528
MaeIII GTNAC 2 cut(s) 128, 229
MalI GATC 2 cut(s) 146, 261
MboI GATC 2 cut(s) 144, 259
MboII GAAGA 5 cut(s) 74, 87, 103, 513, 566
MflI RGATCY 1 cut(s) 144
MlsI TGGCCA 2 cut(s) 278, 404
MluCI AATT 4 cut(s) 21, 480, 682, 758
MluNI TGGCCA 2 cut(s) 278, 404
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 3 cut(s) 165, 181, 549
Mox20I TGGCCA 2 cut(s) 278, 404
MroI TCCGGA 1 cut(s) 147
MroNI GCCGGC 1 cut(s) 504
MscI TGGCCA 2 cut(s) 278, 404
MseI TTAA 2 cut(s) 8, 841
Msp20I TGGCCA 2 cut(s) 278, 404
MspA1I CMGCKG 1 cut(s) 744
MspI CCGG 3 cut(s) 148, 494, 505
MspR9I CCNGG 1 cut(s) 494
MwoI GCNNNNNNNGC 4 cut(s) 50, 169, 275, 510
NaeI GCCGGC 1 cut(s) 506
NciI CCSGG 1 cut(s) 494
NdeI CATATG 1 cut(s) 137
NdeII GATC 2 cut(s) 144, 259
NgoMIV GCCGGC 1 cut(s) 504
NlaIII CATG 3 cut(s) 266, 403, 611
NlaIV GGNNCC 4 cut(s) 146, 340, 473, 777
NmeAIII GCCGAG 2 cut(s) 205, 276
NmuCI GTSAC 2 cut(s) 128, 229
NspV TTCGAA 1 cut(s) 25
PagI TCATGA 2 cut(s) 262, 607
PdiI GCCGGC 1 cut(s) 506
PfeI GAWTC 1 cut(s) 689
PkrI GCNGC 2 cut(s) 249, 252
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PpuMI RGGWCCY 1 cut(s) 471
Psp1406I AACGTT 1 cut(s) 528
Psp5II RGGWCCY 1 cut(s) 471
PspEI GGTNACC 1 cut(s) 128
PspN4I GGNNCC 4 cut(s) 146, 340, 473, 777
PspPI GGNCC 3 cut(s) 89, 471, 507
PspPPI RGGWCCY 1 cut(s) 471
PsrI GAACNNNNNNTAC 2 cut(s) 480, 512
PsuI RGATCY 1 cut(s) 144
RsaI GTAC 2 cut(s) 572, 797
RsaNI GTAC 2 cut(s) 571, 796
SaqAI TTAA 2 cut(s) 8, 841
SatI GCNGC 2 cut(s) 248, 251
Sau3AI GATC 2 cut(s) 144, 259
Sau96I GGNCC 3 cut(s) 89, 471, 507
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 494
SfaNI GCATC 3 cut(s) 68, 150, 159
SfiI GGCCNNNNNGGCC 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 25
SinI GGWCC 2 cut(s) 89, 471
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 4 cut(s) 21, 480, 682, 758
SsiI CCGC 4 cut(s) 44, 248, 251, 744
SspMI CTAG 3 cut(s) 54, 255, 767
StyD4I CCNGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 155, 235
TaiI ACGT 3 cut(s) 387, 519, 531
TaqI TCGA 2 cut(s) 25, 218
TasI AATT 4 cut(s) 21, 480, 682, 758
TatI WGTACW 1 cut(s) 570
TauI GCSGC 2 cut(s) 250, 253
TfiI GAWTC 1 cut(s) 689
Tru1I TTAA 2 cut(s) 8, 841
Tru9I TTAA 2 cut(s) 8, 841
TscAI CASTG 1 cut(s) 598
TseFI GTSAC 2 cut(s) 128, 229
Tsp45I GTSAC 2 cut(s) 128, 229
TspDTI ATGAA 2 cut(s) 227, 430
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 598
VpaK11BI GGWCC 2 cut(s) 89, 471
XspI CTAG 3 cut(s) 54, 255, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.