Rorug05G0406200

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012341
Physical Location & Seq
Reverse (-)
55950690 .. 55951289
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0406200.1

Sequence Viewer

Length: 327 bp
ATGTCCAGATTCAATCTGGAGAAAATTTTGATGACTGTTGAAAAGTACAAGGTCACCCATTTGTGGGTTGTGCCTCCTATTATACTTGCTCTGTCAAAGGACAGTGTGGTTAAGAAGTACAACCTTTCATCTTTGTTGAAGCATATTGGGTCCGGTGCAGCTCATCTGGGGAAAGAGTTGATGGAGGAGTGTGCAAAAATTATTCCTCAAGGTGTAGTTGCTCAGGGTTATGGTATGACAGAAACCTGTGGAATTGTTTCAGTTGAGAATGCACTCGACATAGTGGTTCAGCTGGAACTCTTGTTTCCGGAGTTGAATCTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

108

Amino Acids

11.96

Weight (kDa)

6.82

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 8 - 88 1e-16 AMP-binding enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30090
fragaria_vesca FvH4_3g39120 FvH4_3g39120
malus_domestica MD03G1064100.v1.1 MD11G1067900.v1.1
prunus_persica Prupe.6G053400_v2.0.a1
pyrus_communis pycom03g05160 pycom11g05700
rosa_chinensis RchiOBHm_Chr5g0070491
rosa_laevigata RLG00000036137
rosa_multiflora Rmu_sc0005708.1_g000009
rosa_roxburghii Rroxscaffold_1G00010740
rosa_rugosa Rorug05G0406200 Rorug05G0406300
rosa_samantha Rh5AG461400 Rh5BG479700 Rh5CG503900 Rh5DG492000
rosa_wichuraiana Rw5G043020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 307
AcsI RAATTY 1 cut(s) 24
AfaI GTAC 2 cut(s) 47, 119
AfiI CCNNNNNNNGG 2 cut(s) 63, 64
AgsI TTSAA 4 cut(s) 13, 41, 139, 316
AluBI AGCT 2 cut(s) 161, 292
AluI AGCT 2 cut(s) 161, 292
Aor13HI TCCGGA 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 24
Asp700I GAANNNNTTC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 175
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 151
BpmI CTGGAG 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 192
BsaWI WCCGGW 2 cut(s) 152, 307
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 64
BseAI TCCGGA 1 cut(s) 307
BseLI CCNNNNNNNGG 2 cut(s) 63, 64
BseMII CTCAG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 177
BsiSI CCGG 2 cut(s) 153, 308
BslI CCNNNNNNNGG 2 cut(s) 63, 64
BsmI GAATGC 1 cut(s) 274
Bsp13I TCCGGA 1 cut(s) 307
BspCNI CTCAG 1 cut(s) 235
BspEI TCCGGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 37, 104
BstDEI CTNAG 2 cut(s) 222, 320
BstEII GGTNACC 1 cut(s) 52
BstPI GGTNACC 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 46, 118
CviJI RGCY 2 cut(s) 161, 292
CviKI_1 RGCY 2 cut(s) 161, 292
CviQI GTAC 2 cut(s) 46, 118
DdeI CTNAG 2 cut(s) 222, 320
Eco47I GGWCC 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 52
EcoO65I GGTNACC 1 cut(s) 52
FaiI YATR 5 cut(s) 83, 144, 231, 236, 281
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 38
HapII CCGG 2 cut(s) 153, 308
HinfI GANTC 2 cut(s) 9, 316
HpaII CCGG 2 cut(s) 153, 308
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 3 cut(s) 6, 17, 308
HpyCH4III ACNGT 2 cut(s) 37, 104
HpyCH4V TGCA 3 cut(s) 158, 194, 272
HpyF3I CTNAG 2 cut(s) 222, 320
Kpn2I TCCGGA 1 cut(s) 307
LpnPI CCDG 8 cut(s) 2, 19, 152, 166, 209, 259, 278, 321
Lsp1109I GCAGC 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 52
MluCI AATT 3 cut(s) 24, 198, 252
MnlI CCTC 3 cut(s) 84, 178, 216
MroI TCCGGA 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 256
MseI TTAA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 2 cut(s) 153, 308
Mva1269I GAATGC 1 cut(s) 274
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 52
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 9, 316
PkrI GCNGC 1 cut(s) 160
PspEI GGTNACC 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 292
RsaI GTAC 2 cut(s) 47, 119
RsaNI GTAC 2 cut(s) 46, 118
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 150
SetI ASST 6 cut(s) 54, 126, 163, 214, 248, 294
SinI GGWCC 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 3 cut(s) 24, 198, 252
TaaI ACNGT 2 cut(s) 37, 104
TaqI TCGA 1 cut(s) 276
TasI AATT 3 cut(s) 24, 198, 252
TatI WGTACW 2 cut(s) 45, 117
TfiI GAWTC 2 cut(s) 9, 316
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.