Rorug05G0406300

N-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012341
Physical Location & Seq
Reverse (-)
55965484 .. 55978264
12781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0406300.1

Sequence Viewer

Length: 1101 bp
ATGCTTGTAAAACAGTGCCGTGTAACTCCTCAAAGAAGAATCTTTCTCTGTTCTGCCATTAGAGCTTCGAATGCAAGCGCTGCCGCCGAGTCTTCTTCTTCTTCTTCTTCTCCGGGACTCTACTCGGCCAAGCAATTTGAGCTCACAGTTCCCAACATTGACTTGGTTCTCAAGGACGTCCGCCCCTATCTCATCAACTATGGTGGAAACGTCGACGTTGTGTCCGTCAAAGACGGCGTCGTTTCTCTCAAGCTCCAAGGGGCTTGTGGAAACTGTCCTAGCTCAACAACCACCATGAAAATGGGGATTGAACGAGTGCTTAAAGAAAAGTCTGGAGATGCACTCAAGGATATTCAACAATCATCAACCTATGGAAAGGTTCTCGTCCTAGATGGGGTGATTCAGCTGACAGAAAGGGATGAATGTGTCTATCAAGAAATGATTACTCATCTTCCTCTCTGCCCAATTCCAAACCCCAAGAAGGTTTTGGTTATCGGTGGAGGAGATGGTGGTGTACTGAGGGAAGTGGCTAGTCATTCTTCTGTCAAGCAAATAGATATATGTGAGATTGATAAGATGGTTGTTGATGTTTCAAAACAGTTTTTCCCTCGTGTAGCTATTGGATATGAGGATCCCAGGGTGACACTCCATGTTGGTGATGGAGTCGCATTTTCAAAGGCTGTTTTAGCAGGAACTTATGATGCAATAATTGTGGACTCTTCTGATCCCATAGGTAATACTTTTGAGTTTGAAGAAGCGGAAGAAGAAGGAGAAGTTCCAAATGCAGCTTGCCAAGAAAGGATAGTGAAAAGTGTATGTACACTTCTCTTTATTACTAATAAGTATGATAAAGGACCTAGCCAAGAACCGGCCGTAGTTGCCGAAGCCAATGATGCCAATTTTGTGACCGTTGGATTTTCGGTTATGGGTTTTGACGAGGACAGTGTGACCTTGTTGGACAAAGGACCTGGCCAAGAACTGGCCGTAGTTGCCGAAGCCAATGATGCCAATTTTGAGATCAGCGTTGGATTTTCGGTTATGGGTTTTGAATTGGGACTAGTAGTCAAAGGGCTGTGTAGCATCGATGGTTTGGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1

Protein Analysis

366

Amino Acids

39.1

Weight (kDa)

4.63

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NifU PF01106 54 - 111 9.6e-21 NifU-like domain
Spermine_synt_N PF17284 118 - 138 6.7e-06 Spermidine synthase tetramerisation domain
Spermine_synth PF01564 141 - 249 7.7e-45 Spermine/spermidine synthase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30090
fragaria_vesca FvH4_3g39120 FvH4_3g39120
malus_domestica MD03G1064100.v1.1 MD11G1067900.v1.1
prunus_persica Prupe.6G053400_v2.0.a1
pyrus_communis pycom03g05160 pycom11g05700
rosa_chinensis RchiOBHm_Chr5g0070491
rosa_laevigata RLG00000036137
rosa_multiflora Rmu_sc0005708.1_g000009
rosa_roxburghii Rroxscaffold_1G00010740
rosa_rugosa Rorug05G0406200 Rorug05G0406300
rosa_samantha Rh5AG461400 Rh5BG479700 Rh5CG503900 Rh5DG492000
rosa_wichuraiana Rw5G043020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 979
AccI GTMKAC 1 cut(s) 213
AciI CCGC 3 cut(s) 84, 181, 758
AclWI GGATC 3 cut(s) 626, 639, 719
AcoI YGGCCR 4 cut(s) 126, 870, 970, 981
AcyI GRCGYC 2 cut(s) 177, 237
AfaI GTAC 2 cut(s) 516, 820
AfeI AGCGCT 1 cut(s) 79
AfiI CCNNNNNNNGG 4 cut(s) 394, 481, 868, 979
AgsI TTSAA 6 cut(s) 311, 356, 594, 675, 752, 1049
AhdI GACNNNNNGTC 2 cut(s) 220, 1061
AhlI ACTAGT 1 cut(s) 1057
AjnI CCWGG 2 cut(s) 635, 967
AluBI AGCT 7 cut(s) 65, 142, 253, 282, 406, 617, 788
AluI AGCT 7 cut(s) 65, 142, 253, 282, 406, 617, 788
Alw21I GWGCWC 1 cut(s) 144
AlwI GGATC 3 cut(s) 626, 639, 719
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 4 cut(s) 126, 870, 970, 981
ApeKI GCWGC 2 cut(s) 80, 785
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 854, 965
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 409, 652, 668
AsuII TTCGAA 1 cut(s) 68
AvaII GGWCC 2 cut(s) 854, 965
BalI TGGCCA 1 cut(s) 972
BamHI GGATCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 144
BarI GAAGNNNNNNTAC 2 cut(s) 807, 839
BauI CACGAG 1 cut(s) 609
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 67, 797
BccI CCATC 5 cut(s) 386, 500, 571, 653, 1079
BceAI ACGGC 4 cut(s) 3, 250, 857, 968
BciT130I CCWGG 2 cut(s) 637, 969
BcnI CCSGG 1 cut(s) 114
BcuI ACTAGT 1 cut(s) 1057
BfaI CTAG 5 cut(s) 279, 389, 531, 858, 1058
BfoI RGCGCY 1 cut(s) 81
BisI GCNGC 3 cut(s) 81, 84, 786
BlsI GCNGC 3 cut(s) 82, 85, 787
Bme1390I CCNGG 3 cut(s) 114, 637, 969
Bme18I GGWCC 2 cut(s) 854, 965
BmeRI GACNNNNNGTC 2 cut(s) 220, 1061
BmgT120I GGNCC 2 cut(s) 854, 965
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 3 cut(s) 114, 637, 969
BmsI GCATC 5 cut(s) 328, 691, 883, 994, 1089
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 327, 359
BpmI CTGGAG 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 3 cut(s) 155, 233, 329
BpuMI CCSGG 1 cut(s) 114
Bsa29I ATCGAT 1 cut(s) 1083
BsaHI GRCGYC 2 cut(s) 177, 237
BsaJI CCNNGG 3 cut(s) 256, 635, 636
Bsc4I CCNNNNNNNGG 4 cut(s) 394, 481, 868, 979
Bse118I RCCGGY 1 cut(s) 868
Bse1I ACTGG 1 cut(s) 984
BseBI CCWGG 2 cut(s) 637, 969
BseCI ATCGAT 1 cut(s) 1083
BseDI CCNNGG 3 cut(s) 256, 635, 636
BseGI GGATG 1 cut(s) 424
BseLI CCNNNNNNNGG 4 cut(s) 394, 481, 868, 979
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 1 cut(s) 984
BseRI GAGGAG 2 cut(s) 18, 516
BseX3I CGGCCG 1 cut(s) 870
BseXI GCAGC 2 cut(s) 67, 797
Bsh1285I CGRYCG 1 cut(s) 873
BshFI GGCC 4 cut(s) 128, 872, 972, 983
BshVI ATCGAT 1 cut(s) 1083
BsiEI CGRYCG 1 cut(s) 873
BsiHKAI GWGCWC 1 cut(s) 144
BsiSI CCGG 2 cut(s) 113, 869
BslFI GGGAC 2 cut(s) 129, 1068
BslI CCNNNNNNNGG 4 cut(s) 394, 481, 868, 979
BsmFI GGGAC 2 cut(s) 129, 1068
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 4 cut(s) 128, 872, 972, 983
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 818
Bsp143I GATC 3 cut(s) 631, 724, 1017
BspACI CCGC 3 cut(s) 84, 181, 758
BspANI GGCC 4 cut(s) 128, 872, 972, 983
BspCNI CTCAG 1 cut(s) 510
BspDI ATCGAT 1 cut(s) 1083
BspLI GGNNCC 1 cut(s) 633
BspPI GGATC 3 cut(s) 626, 639, 719
BspT104I TTCGAA 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 868
BsrGI TGTACA 1 cut(s) 818
BsrI ACTGG 1 cut(s) 984
BssAI RCCGGY 1 cut(s) 868
BssECI CCNNGG 3 cut(s) 256, 635, 636
BssMI GATC 3 cut(s) 631, 724, 1017
BssNI GRCGYC 2 cut(s) 177, 237
BssSI CACGAG 1 cut(s) 609
BssT1I CCWWGG 1 cut(s) 256
Bst2BI CACGAG 1 cut(s) 609
Bst2UI CCWGG 2 cut(s) 637, 969
Bst4CI ACNGT 6 cut(s) 15, 148, 275, 600, 910, 944
Bst6I CTCTTC 1 cut(s) 724
BstACI GRCGYC 2 cut(s) 177, 237
BstAPI GCANNNNNTGC 1 cut(s) 80
BstAUI TGTACA 1 cut(s) 818
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 76, 790
BstDEI CTNAG 1 cut(s) 518
BstF5I GGATG 1 cut(s) 424
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 634, 727, 1020
BstMBI GATC 3 cut(s) 631, 724, 1017
BstMCI CGRYCG 1 cut(s) 873
BstMWI GCNNNNNNNGC 9 cut(s) 62, 71, 80, 139, 686, 878, 893, 989, 1004
BstNI CCWGG 2 cut(s) 637, 969
BstSCI CCNGG 3 cut(s) 112, 635, 967
BstV1I GCAGC 2 cut(s) 67, 797
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 631
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 631
BstZI CGGCCG 1 cut(s) 870
Bsu15I ATCGAT 1 cut(s) 1083
BsuRI GGCC 4 cut(s) 128, 872, 972, 983
BsuTUI ATCGAT 1 cut(s) 1083
BtsCI GGATG 1 cut(s) 424
BtsIMutI CAGTG 2 cut(s) 20, 949
Cac8I GCNNGC 2 cut(s) 76, 790
CfoI GCGC 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 868
Cfr13I GGNCC 2 cut(s) 854, 965
ClaI ATCGAT 1 cut(s) 1083
CseI GACGC 1 cut(s) 226
Csp6I GTAC 2 cut(s) 515, 819
CspCI CAANNNNNGTGG 4 cut(s) 184, 219, 693, 728
CviAII CATG 2 cut(s) 295, 650
CviQI GTAC 2 cut(s) 515, 819
DdeI CTNAG 1 cut(s) 518
DpnI GATC 3 cut(s) 633, 726, 1019
DpnII GATC 3 cut(s) 631, 724, 1017
DriI GACNNNNNGTC 2 cut(s) 220, 1061
EaeI YGGCCR 4 cut(s) 126, 870, 970, 981
EagI CGGCCG 1 cut(s) 870
Eam1104I CTCTTC 1 cut(s) 724
Eam1105I GACNNNNNGTC 2 cut(s) 220, 1061
EarI CTCTTC 1 cut(s) 724
EciI GGCGGA 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 142
EclXI CGGCCG 1 cut(s) 870
Eco130I CCWWGG 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 144
Eco47I GGWCC 2 cut(s) 854, 965
Eco47III AGCGCT 1 cut(s) 79
Eco52I CGGCCG 1 cut(s) 870
Eco53kI GAGCTC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 142
EcoO109I RGGNCCY 2 cut(s) 854, 965
EcoRII CCWGG 2 cut(s) 635, 967
EcoT14I CCWWGG 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 2 cut(s) 298, 653
FaqI GGGAC 2 cut(s) 129, 1068
FatI CATG 2 cut(s) 294, 649
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 81, 84, 786
FokI GGATG 1 cut(s) 431
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 3 cut(s) 81, 84, 786
FspBI CTAG 5 cut(s) 279, 389, 531, 858, 1058
GlaI GCGC 1 cut(s) 79
GluI GCNGC 3 cut(s) 81, 84, 786
GsuI CTGGAG 1 cut(s) 354
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 4 cut(s) 128, 872, 972, 983
HapII CCGG 2 cut(s) 113, 869
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 2 cut(s) 177, 237
Hin1II CATG 2 cut(s) 298, 653
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 6 cut(s) 39, 89, 117, 400, 663, 716
HpaII CCGG 2 cut(s) 113, 869
HphI GGTGA 3 cut(s) 409, 652, 668
Hpy166II GTNNAC 4 cut(s) 214, 515, 715, 821
Hpy188I TCNGA 1 cut(s) 724
Hpy188III TCNNGA 2 cut(s) 333, 434
Hpy8I GTNNAC 4 cut(s) 214, 515, 715, 821
Hpy99I CGWCG 3 cut(s) 215, 218, 242
HpyAV CCTTC 2 cut(s) 475, 761
HpyCH4III ACNGT 6 cut(s) 15, 148, 275, 600, 910, 944
HpyCH4IV ACGT 3 cut(s) 177, 210, 216
HpyCH4V TGCA 4 cut(s) 74, 341, 704, 785
HpyF10VI GCNNNNNNNGC 9 cut(s) 62, 71, 80, 139, 686, 878, 893, 989, 1004
HpyF3I CTNAG 1 cut(s) 518
HpySE526I ACGT 3 cut(s) 177, 210, 216
Hsp92I GRCGYC 2 cut(s) 177, 237
Hsp92II CATG 2 cut(s) 298, 653
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 3 cut(s) 631, 724, 1017
LmnI GCTCC 1 cut(s) 258
LpnPI CCDG 9 cut(s) 126, 318, 622, 649, 675, 882, 954, 965, 981
Lsp1109I GCAGC 2 cut(s) 67, 797
LweI GCATC 5 cut(s) 328, 691, 883, 994, 1089
MaeI CTAG 5 cut(s) 279, 389, 531, 858, 1058
MaeII ACGT 3 cut(s) 177, 210, 216
MaeIII GTNAC 4 cut(s) 22, 640, 904, 946
MalI GATC 3 cut(s) 633, 726, 1019
MboI GATC 3 cut(s) 631, 724, 1017
MflI RGATCY 1 cut(s) 631
MhlI GDGCHC 1 cut(s) 144
MlsI TGGCCA 1 cut(s) 972
MluCI AATT 6 cut(s) 134, 465, 708, 898, 1009, 1049
MluNI TGGCCA 1 cut(s) 972
MlyI GAGTC 4 cut(s) 98, 111, 672, 710
MmeI TCCRAC 3 cut(s) 892, 936, 1006
MnlI CCTC 7 cut(s) 39, 465, 494, 513, 618, 622, 931
Mox20I TGGCCA 1 cut(s) 972
MscI TGGCCA 1 cut(s) 972
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 2 cut(s) 299, 654
Msp20I TGGCCA 1 cut(s) 972
MspA1I CMGCKG 1 cut(s) 406
MspI CCGG 2 cut(s) 113, 869
MspR9I CCNGG 3 cut(s) 114, 637, 969
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 2 cut(s) 637, 969
MwoI GCNNNNNNNGC 9 cut(s) 62, 71, 80, 139, 686, 878, 893, 989, 1004
NciI CCSGG 1 cut(s) 114
NdeII GATC 3 cut(s) 631, 724, 1017
NlaIII CATG 2 cut(s) 298, 653
NlaIV GGNNCC 1 cut(s) 633
NmeAIII GCCGAG 2 cut(s) 104, 112
NmuCI GTSAC 3 cut(s) 640, 904, 946
NspV TTCGAA 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 39, 400
PflFI GACNNNGTC 1 cut(s) 236
PflMI CCANNNNNTGG 1 cut(s) 979
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 3 cut(s) 82, 85, 787
PleI GAGTC 4 cut(s) 97, 111, 671, 710
PpsI GAGTC 4 cut(s) 97, 111, 671, 710
PpuMI RGGWCCY 2 cut(s) 854, 965
Psp124BI GAGCTC 1 cut(s) 144
Psp5II RGGWCCY 2 cut(s) 854, 965
Psp6I CCWGG 2 cut(s) 635, 967
PspGI CCWGG 2 cut(s) 635, 967
PspN4I GGNNCC 1 cut(s) 633
PspPI GGNCC 2 cut(s) 854, 965
PspPPI RGGWCCY 2 cut(s) 854, 965
PsuI RGATCY 1 cut(s) 631
PsyI GACNNNGTC 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 406
RsaI GTAC 2 cut(s) 516, 820
RsaNI GTAC 2 cut(s) 515, 819
RseI CAYNNNNRTG 2 cut(s) 299, 654
SacI GAGCTC 1 cut(s) 144
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 3 cut(s) 81, 84, 786
Sau3AI GATC 3 cut(s) 631, 724, 1017
Sau96I GGNCC 2 cut(s) 854, 965
SchI GAGTC 4 cut(s) 98, 111, 672, 710
ScrFI CCNGG 3 cut(s) 114, 637, 969
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 5 cut(s) 328, 691, 883, 994, 1089
SfuI TTCGAA 1 cut(s) 68
SgrDI CGTCGACG 1 cut(s) 212
SinI GGWCC 2 cut(s) 854, 965
SmiMI CAYNNNNRTG 2 cut(s) 299, 654
SmlI CTYRAG 3 cut(s) 170, 248, 344
SmoI CTYRAG 3 cut(s) 170, 248, 344
SpeI ACTAGT 1 cut(s) 1057
Sse9I AATT 6 cut(s) 134, 465, 708, 898, 1009, 1049
SsiI CCGC 3 cut(s) 84, 181, 758
SspMI CTAG 5 cut(s) 279, 389, 531, 858, 1058
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 3 cut(s) 112, 635, 967
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 6 cut(s) 15, 148, 275, 600, 910, 944
TaiI ACGT 3 cut(s) 180, 213, 219
TaqI TCGA 3 cut(s) 68, 213, 1083
TasI AATT 6 cut(s) 134, 465, 708, 898, 1009, 1049
TatI WGTACW 2 cut(s) 514, 818
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 2 cut(s) 39, 400
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 20, 949
TseFI GTSAC 3 cut(s) 640, 904, 946
TseI GCWGC 2 cut(s) 80, 785
Tsp45I GTSAC 3 cut(s) 640, 904, 946
TspDTI ATGAA 2 cut(s) 311, 435
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 2 cut(s) 20, 949
Tth111I GACNNNGTC 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 979
VpaK11BI GGWCC 2 cut(s) 854, 965
XcmI CCANNNNNNNNNTGG 5 cut(s) 160, 263, 298, 484, 656
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 5 cut(s) 279, 389, 531, 858, 1058
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.