FvH4_3g39690

malonyl-CoA-acyl carrier protein transacylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012502
Physical Location & Seq
Reverse (-)
33678705 .. 33682464
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39690.t2

Sequence Viewer

Length: 1074 bp
ATGCGCACCCTTCATAACCTGCACCACCACCGCTCCCTTATCCTACGCACCTCTCTCTCCACCATGTCCGCCGCCTCTCTCGCCGTATCCCCCATTTCTCTCAACTTCTCGGGGCTCCGAAATGGCACCGCCCGCCCCGTCCTCGGTGTCCGCAACCTCTCCCGATCTAGGGTTTCCATGAGCGTCTCCGTTGGATCATCGCCGACTGTAACCGACGACGCCTTGTTCGCCGATTACAAGCCCACCAATGCTTTCCTCTTCCCCGGCCAAGGTGCACAAGCACTTGGAATGGGAAAGGAAGCTCAGAGCGTGCCGGCAGCTGCAGAGTTGTACAAGAAGGCAAATGATATTTTAGGGTTTGATCTTTTAGATGTTTGTATCAATGGACCGAAGGAGAAGCTGGATTCTACTGTTATAAGCCAGCCAGCTCTTTATGTCACAAGTCTAGCTGCTGTTGAGTTGCTCCGTGCACGCGATGGAGGTCAGCAGATCATTGATTCTGTTGATGTTACATGTGGTCTAAGTTTGGGAGAATACACTGCTCTTGCATTTGCTGGTTCATTTAGCTTTGAGGATGGGCTCAAGCTGGTTAAACTGAGGGGAGAAGCTATGCAGGAAGCTGCCGATGCTGCCAAAGGTGCCATGGTCAGTGTCATAGGGTTGGACTCAGACAAGGTTCAACAGCTGTGTGACGCAGCCAATGAAGAAGTTGATGACAAGGACAAAGTTCAAATTGCAAATTACCTATGTACTGGAAACTATGCTGTATCTGGAGGTGTGAAAGGAGTGGAAGCACTAGAAGCCAAGGCAAAGTCATTCAAGGCCCGAATGACGGTGCGTCTAGCTGTTGCTGGTGCTTTCCACACTAGGTTTATGGACCCAGCTGTATCAAGATTGGAAGCGAAATTGGCAGCAACACAGATTAGAACTCCCAGAATACCGGTAATCTCCAACGTTGATGCACAGCCACATTCAGACCCTGAAGTGATTAAGAAAATACTGGCTCGCCAGCACCAATTTACAGGTGACTTCCCCTGTTCAGTGGGAAACAACAGTCAAGACTCTCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00333 ko01100 ko01130 ko01212 map00061 map00333 map01100 map01130 map01212
Pfam Domains
Protein Families
Acyl_transf_1

Protein Analysis

358

Amino Acids

37.98

Weight (kDa)

7.05

Isoelectric Point (pI)

30.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl_transf_1 PF00698 85 - 364 9.2e-30 Acyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30200 AT2G30200
fragaria_vesca FvH4_3g39690 FvH4_3g39690 FvH4_3g39690
malus_domestica MD03G1055800.v1.1 MD11G1056800.v1.1
prunus_persica Prupe.6G048900_v2.0.a1
pyrus_communis pycom03g04430 pycom11g04780
rosa_chinensis RchiOBHm_Chr5g0071571
rosa_laevigata RLG00000036226
rosa_multiflora Rmu_sc0005745.1_g000009
rosa_roxburghii Rroxscaffold_1G00009600
rosa_rugosa Rorug05G0413300
rosa_samantha Rh5AG469200 Rh5CG512400 Rh5DG499200
rosa_wichuraiana Rw5G043600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 27
AccB1I GGYRCC 2 cut(s) 125, 638
AccBSI CCGCTC 1 cut(s) 33
AccII CGCG 1 cut(s) 474
AciI CCGC 6 cut(s) 31, 69, 72, 129, 133, 151
AclI AACGTT 1 cut(s) 954
AclWI GGATC 1 cut(s) 202
AcoI YGGCCR 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 1002
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 2 cut(s) 332, 751
AfiI CCNNNNNNNGG 5 cut(s) 143, 168, 169, 269, 832
AflIII ACRYGT 1 cut(s) 512
AgeI ACCGGT 1 cut(s) 940
AgsI TTSAA 3 cut(s) 680, 731, 820
AhdI GACNNNNNGTC 1 cut(s) 837
Alw21I GWGCWC 2 cut(s) 277, 472
Alw26I GTCTC 1 cut(s) 190
Alw44I GTGCAC 2 cut(s) 273, 468
AlwI GGATC 1 cut(s) 202
AlwNI CAGNNNCTG 1 cut(s) 980
Ama87I CYCGRG 1 cut(s) 109
AoxI GGCC 2 cut(s) 265, 822
ApaLI GTGCAC 2 cut(s) 273, 468
ApeKI GCWGC 7 cut(s) 317, 320, 449, 620, 629, 695, 911
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AsiGI ACCGGT 1 cut(s) 940
AspLEI GCGC 1 cut(s) 6
AspS9I GGNCC 3 cut(s) 386, 823, 877
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 1037
AvaI CYCGRG 1 cut(s) 109
AvaII GGWCC 2 cut(s) 386, 877
BaeGI GKGCMC 2 cut(s) 277, 472
BanI GGYRCC 2 cut(s) 125, 638
BanII GRGCYC 2 cut(s) 117, 582
Bbv12I GWGCWC 2 cut(s) 277, 472
BbvI GCAGC 7 cut(s) 307, 329, 436, 607, 616, 707, 923
BccI CCATC 2 cut(s) 470, 569
BceAI ACGGC 1 cut(s) 68
BciVI GTATCC 1 cut(s) 97
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 5 cut(s) 168, 446, 797, 842, 867
BfmI CTRYAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 27
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 8 cut(s) 72, 318, 321, 450, 621, 630, 696, 912
BlsI GCNGC 8 cut(s) 73, 319, 322, 451, 622, 631, 697, 913
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 386, 877
BmeRI GACNNNNNGTC 1 cut(s) 837
BmeT110I CYCGRG 1 cut(s) 109
BmgT120I GGNCC 3 cut(s) 386, 823, 877
BmiI GGNNCC 4 cut(s) 116, 127, 640, 879
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 616, 949
BpmI CTGGAG 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 264
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 5 cut(s) 142, 262, 268, 642, 804
BsaWI WCCGGW 1 cut(s) 940
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 168, 169, 269, 832
Bse118I RCCGGY 2 cut(s) 313, 940
Bse1I ACTGG 2 cut(s) 757, 1005
BseDI CCNNGG 5 cut(s) 142, 262, 268, 642, 804
BseGI GGATG 1 cut(s) 580
BseLI CCNNNNNNNGG 5 cut(s) 143, 168, 169, 269, 832
BseMII CTCAG 3 cut(s) 317, 587, 681
BseNI ACTGG 2 cut(s) 757, 1005
BseSI GKGCMC 2 cut(s) 277, 472
BseXI GCAGC 7 cut(s) 307, 329, 436, 607, 616, 707, 923
BseYI CCCAGC 1 cut(s) 880
BsgI GTGCAG 1 cut(s) 5
Bsh1236I CGCG 1 cut(s) 474
BshFI GGCC 2 cut(s) 267, 824
BshNI GGYRCC 2 cut(s) 125, 638
BshTI ACCGGT 1 cut(s) 940
BsiHKAI GWGCWC 2 cut(s) 277, 472
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 3 cut(s) 264, 314, 941
BslI CCNNNNNNNGG 5 cut(s) 143, 168, 169, 269, 832
BsmAI GTCTC 1 cut(s) 190
BsmBI CGTCTC 1 cut(s) 190
BsnI GGCC 2 cut(s) 267, 824
BsoBI CYCGRG 1 cut(s) 109
Bsp1286I GDGCHC 4 cut(s) 117, 277, 472, 582
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 4 cut(s) 164, 194, 361, 489
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 6 cut(s) 31, 69, 72, 129, 133, 151
BspANI GGCC 2 cut(s) 267, 824
BspCNI CTCAG 3 cut(s) 316, 588, 680
BspFNI CGCG 1 cut(s) 474
BspLI GGNNCC 4 cut(s) 116, 127, 640, 879
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 27
BspPI GGATC 1 cut(s) 202
BspT107I GGYRCC 2 cut(s) 125, 638
BsrBI CCGCTC 1 cut(s) 33
BsrFI RCCGGY 2 cut(s) 313, 940
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 2 cut(s) 757, 1005
BssAI RCCGGY 2 cut(s) 313, 940
BssECI CCNNGG 5 cut(s) 142, 262, 268, 642, 804
BssMI GATC 4 cut(s) 164, 194, 361, 489
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 3 cut(s) 268, 642, 804
Bst4CI ACNGT 4 cut(s) 208, 412, 835, 1055
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 219
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 8 cut(s) 133, 311, 315, 422, 426, 472, 1006, 1010
BstDEI CTNAG 4 cut(s) 303, 521, 596, 667
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 1 cut(s) 580
BstFNI CGCG 1 cut(s) 474
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 4 cut(s) 167, 197, 364, 492
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 4 cut(s) 164, 194, 361, 489
BstMWI GCNNNNNNNGC 8 cut(s) 80, 132, 227, 626, 629, 638, 800, 908
BstNSI RCATGY 1 cut(s) 516
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 2 cut(s) 277, 472
BstUI CGCG 1 cut(s) 474
BstV1I GCAGC 7 cut(s) 307, 329, 436, 607, 616, 707, 923
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 267, 824
BtgI CCRYGG 1 cut(s) 642
BtgZI GCGATG 2 cut(s) 183, 489
BtsCI GGATG 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 3 cut(s) 537, 655, 1047
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 8 cut(s) 133, 311, 315, 422, 426, 472, 1006, 1010
CaiI CAGNNNCTG 1 cut(s) 980
CfoI GCGC 1 cut(s) 6
Cfr10I RCCGGY 2 cut(s) 313, 940
Cfr13I GGNCC 3 cut(s) 386, 823, 877
CseI GACGC 4 cut(s) 172, 227, 701, 827
Csp6I GTAC 2 cut(s) 331, 750
CspAI ACCGGT 1 cut(s) 940
CviAII CATG 4 cut(s) 64, 178, 513, 643
CviQI GTAC 2 cut(s) 331, 750
DdeI CTNAG 4 cut(s) 303, 521, 596, 667
DpnI GATC 4 cut(s) 166, 196, 363, 491
DpnII GATC 4 cut(s) 164, 194, 361, 489
DriI GACNNNNNGTC 1 cut(s) 837
EaeI YGGCCR 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 263
Eam1105I GACNNNNNGTC 1 cut(s) 837
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 1 cut(s) 58
Eco130I CCWWGG 3 cut(s) 268, 642, 804
Eco24I GRGCYC 2 cut(s) 117, 582
Eco47I GGWCC 2 cut(s) 386, 877
Eco57I CTGAAG 1 cut(s) 1002
Eco88I CYCGRG 1 cut(s) 109
EcoT14I CCWWGG 3 cut(s) 268, 642, 804
EcoT38I GRGCYC 2 cut(s) 117, 582
ErhI CCWWGG 3 cut(s) 268, 642, 804
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 4 cut(s) 67, 181, 516, 646
FatI CATG 4 cut(s) 63, 177, 512, 642
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 8 cut(s) 72, 318, 321, 450, 621, 630, 696, 912
FokI GGATG 1 cut(s) 587
FriOI GRGCYC 2 cut(s) 117, 582
Fsp4HI GCNGC 8 cut(s) 72, 318, 321, 450, 621, 630, 696, 912
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 5 cut(s) 168, 446, 797, 842, 867
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 8 cut(s) 72, 318, 321, 450, 621, 630, 696, 912
GsaI CCCAGC 1 cut(s) 884
GsuI CTGGAG 1 cut(s) 792
HaeIII GGCC 2 cut(s) 267, 824
HapII CCGG 3 cut(s) 264, 314, 941
HgaI GACGC 4 cut(s) 172, 227, 701, 827
HhaI GCGC 1 cut(s) 6
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 4 cut(s) 67, 181, 516, 646
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HinfI GANTC 4 cut(s) 404, 497, 665, 1061
HpaII CCGG 3 cut(s) 264, 314, 941
HphI GGTGA 1 cut(s) 1037
Hpy166II GTNNAC 2 cut(s) 275, 470
Hpy188I TCNGA 4 cut(s) 119, 306, 670, 976
Hpy188III TCNNGA 4 cut(s) 162, 771, 891, 1058
Hpy8I GTNNAC 2 cut(s) 275, 470
Hpy99I CGWCG 2 cut(s) 218, 221
HpyAV CCTTC 3 cut(s) 20, 331, 385
HpyCH4III ACNGT 4 cut(s) 208, 412, 835, 1055
HpyCH4IV ACGT 1 cut(s) 954
HpyCH4V TGCA 8 cut(s) 22, 275, 323, 470, 548, 613, 737, 962
HpyF10VI GCNNNNNNNGC 8 cut(s) 80, 132, 227, 626, 629, 638, 800, 908
HpyF3I CTNAG 4 cut(s) 303, 521, 596, 667
HpySE526I ACGT 1 cut(s) 954
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 4 cut(s) 67, 181, 516, 646
HspAI GCGC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 313
KroNI GCCGGC 1 cut(s) 315
Kzo9I GATC 4 cut(s) 164, 194, 361, 489
LmnI GCTCC 3 cut(s) 38, 120, 468
Lsp1109I GCAGC 7 cut(s) 307, 329, 436, 607, 616, 707, 923
LweI GCATC 2 cut(s) 616, 949
MaeI CTAG 5 cut(s) 168, 446, 797, 842, 867
MaeII ACGT 1 cut(s) 954
MaeIII GTNAC 5 cut(s) 208, 436, 508, 689, 1025
MalI GATC 4 cut(s) 166, 196, 363, 491
MbiI CCGCTC 1 cut(s) 33
MboI GATC 4 cut(s) 164, 194, 361, 489
MboII GAAGA 2 cut(s) 250, 716
MhlI GDGCHC 4 cut(s) 117, 277, 472, 582
MluCI AATT 4 cut(s) 732, 739, 905, 1016
MlyI GAGTC 2 cut(s) 659, 1055
MmeI TCCRAC 3 cut(s) 172, 642, 975
MnlI CCTC 9 cut(s) 61, 85, 152, 167, 266, 473, 565, 591, 767
MroNI GCCGGC 1 cut(s) 313
MseI TTAA 2 cut(s) 591, 990
MspA1I CMGCKG 3 cut(s) 320, 685, 884
MspI CCGG 3 cut(s) 264, 314, 941
MspR9I CCNGG 1 cut(s) 264
MvnI CGCG 1 cut(s) 474
MwoI GCNNNNNNNGC 8 cut(s) 80, 132, 227, 626, 629, 638, 800, 908
NaeI GCCGGC 1 cut(s) 315
NciI CCSGG 1 cut(s) 264
NcoI CCATGG 1 cut(s) 642
NdeII GATC 4 cut(s) 164, 194, 361, 489
NgoMIV GCCGGC 1 cut(s) 313
NlaIII CATG 4 cut(s) 67, 181, 516, 646
NlaIV GGNNCC 4 cut(s) 116, 127, 640, 879
NmuCI GTSAC 3 cut(s) 436, 689, 1025
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 516
PciI ACATGT 1 cut(s) 512
PdiI GCCGGC 1 cut(s) 315
PfeI GAWTC 2 cut(s) 404, 497
PinAI ACCGGT 1 cut(s) 940
PkrI GCNGC 8 cut(s) 73, 319, 322, 451, 622, 631, 697, 913
PleI GAGTC 2 cut(s) 659, 1055
PpsI GAGTC 2 cut(s) 659, 1055
PscI ACATGT 1 cut(s) 512
PsiI TTATAA 1 cut(s) 416
Psp1406I AACGTT 1 cut(s) 954
PspFI CCCAGC 1 cut(s) 880
PspN4I GGNNCC 4 cut(s) 116, 127, 640, 879
PspPI GGNCC 3 cut(s) 386, 823, 877
PstI CTGCAG 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 980
PvuII CAGCTG 3 cut(s) 320, 685, 884
RsaI GTAC 2 cut(s) 332, 751
RsaNI GTAC 2 cut(s) 331, 750
SaqAI TTAA 2 cut(s) 591, 990
SatI GCNGC 8 cut(s) 72, 318, 321, 450, 621, 630, 696, 912
Sau3AI GATC 4 cut(s) 164, 194, 361, 489
Sau96I GGNCC 3 cut(s) 386, 823, 877
SchI GAGTC 2 cut(s) 659, 1055
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 4 cut(s) 117, 277, 472, 582
SfaNI GCATC 2 cut(s) 616, 949
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 2 cut(s) 386, 877
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 4 cut(s) 732, 739, 905, 1016
SsiI CCGC 6 cut(s) 31, 69, 72, 129, 133, 151
SspMI CTAG 5 cut(s) 168, 446, 797, 842, 867
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 3 cut(s) 268, 642, 804
TaaI ACNGT 4 cut(s) 208, 412, 835, 1055
TaiI ACGT 1 cut(s) 957
TaqII GACCGA 1 cut(s) 403
TasI AATT 4 cut(s) 732, 739, 905, 1016
TatI WGTACW 2 cut(s) 330, 749
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 404, 497
Tru1I TTAA 2 cut(s) 591, 990
Tru9I TTAA 2 cut(s) 591, 990
TscAI CASTG 3 cut(s) 544, 655, 1047
TseFI GTSAC 3 cut(s) 436, 689, 1025
TseI GCWGC 7 cut(s) 317, 320, 449, 620, 629, 695, 911
Tsp45I GTSAC 3 cut(s) 436, 689, 1025
TspDTI ATGAA 2 cut(s) 549, 717
TspGWI ACGGA 2 cut(s) 178, 455
TspRI CASTG 3 cut(s) 544, 655, 1047
VneI GTGCAC 2 cut(s) 273, 468
VpaK11BI GGWCC 2 cut(s) 386, 877
XceI RCATGY 1 cut(s) 516
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XspI CTAG 5 cut(s) 168, 446, 797, 842, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.