pycom03g04430

malonyl-CoA-acyl carrier protein transacylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012502
Physical Location & Seq
Reverse (-)
3436062 .. 3437706
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g04430.2

Sequence Viewer

Length: 570 bp
ATGCACACCTCCCTCGGGCTTAACCTCCACCACCCTCTTATCCTTCGCACCTCACTCGCCACCATGGCCGCCTCCATCGCCCTCCCGTCCTCTATTTCTCTCAACTCCTCATCCTTCTCGGGGATCCGGATTGGCGCCGGAGCCCAGCTCGGCGTCCGAAACTTCGGACAATCTAGAGTTTCCATGGCCGCCTCCGTCGGACAGACTTTGCAAAGCGACGCCTTGTTCGCCGACTACAAGCCCTCCTCTGCTTTCCTCTTCCCTGGCCAAGGTGCACAAGCAGTTGGAATGGGAAAGGAAGCTCAAAGTGTTCCTGCTGCTGCAGAGTTATACAAGAAAGCGAACGATATTTTAGGGTTTGATCTTTTGGATGTTTGTATCAATGGACCGAAAGAGAAGCTAGATTCAACTGTTATAAGCCAGCCGGCTATTTACGTCACAAGTCTAGCTGCTGTTGAGTTACTACGTGCACGTGAAGGAGGTCAGCTGATCATTGATTCAGTTGATGTCACATGTGGCCTGAGTTTGGGAGAATATACTGCTCTCGCATTTGCTGAGTCGTTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00061 ko00333 ko01100 ko01130 ko01212 map00061 map00333 map01100 map01130 map01212
Pfam Domains
Protein Families
Acyl_transf_1

Protein Analysis

190

Amino Acids

19.69

Weight (kDa)

5.87

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30200 AT2G30200
fragaria_vesca FvH4_3g39690 FvH4_3g39690 FvH4_3g39690
malus_domestica MD03G1055800.v1.1 MD11G1056800.v1.1
prunus_persica Prupe.6G048900_v2.0.a1
pyrus_communis pycom03g04430 pycom11g04780
rosa_chinensis RchiOBHm_Chr5g0071571
rosa_laevigata RLG00000036226
rosa_multiflora Rmu_sc0005745.1_g000009
rosa_roxburghii Rroxscaffold_1G00009600
rosa_rugosa Rorug05G0413300
rosa_samantha Rh5AG469200 Rh5CG512400 Rh5DG499200
rosa_wichuraiana Rw5G043600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 126
AciI CCGC 2 cut(s) 69, 189
AclWI GGATC 2 cut(s) 118, 131
AcoI YGGCCR 3 cut(s) 66, 186, 265
AcvI CACGTG 1 cut(s) 473
AcyI GRCGYC 3 cut(s) 135, 153, 219
AfiI CCNNNNNNNGG 4 cut(s) 15, 120, 269, 526
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 1 cut(s) 408
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 5 cut(s) 148, 302, 400, 449, 487
AluI AGCT 5 cut(s) 148, 302, 400, 449, 487
Alw21I GWGCWC 2 cut(s) 277, 472
Alw44I GTGCAC 2 cut(s) 273, 468
AlwI GGATC 2 cut(s) 118, 131
Ama87I CYCGRG 2 cut(s) 14, 118
Aor13HI TCCGGA 1 cut(s) 126
AoxI GGCC 4 cut(s) 66, 186, 265, 517
ApaLI GTGCAC 2 cut(s) 273, 468
ApeKI GCWGC 3 cut(s) 317, 320, 449
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 386
AvaI CYCGRG 2 cut(s) 14, 118
AvaII GGWCC 1 cut(s) 386
BaeGI GKGCMC 2 cut(s) 277, 472
BalI TGGCCA 1 cut(s) 267
BamHI GGATCC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 145
BbrPI CACGTG 1 cut(s) 473
Bbv12I GWGCWC 2 cut(s) 277, 472
BbvI GCAGC 3 cut(s) 304, 307, 436
BccI CCATC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 37, 71
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 489
BfaI CTAG 3 cut(s) 174, 401, 446
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 138
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 5 cut(s) 69, 189, 318, 321, 450
BlsI GCNGC 5 cut(s) 70, 190, 319, 322, 451
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 386
BmeT110I CYCGRG 2 cut(s) 14, 118
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 3 cut(s) 125, 136, 142
BmrFI CCNGG 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 132, 164
BsaAI YACGTR 2 cut(s) 467, 473
BsaHI GRCGYC 3 cut(s) 135, 153, 219
BsaJI CCNNGG 5 cut(s) 13, 63, 183, 262, 268
BsaWI WCCGGW 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 120, 269, 526
Bse118I RCCGGY 1 cut(s) 424
BseAI TCCGGA 1 cut(s) 126
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 5 cut(s) 13, 63, 183, 262, 268
BseGI GGATG 2 cut(s) 110, 376
BseLI CCNNNNNNNGG 4 cut(s) 15, 120, 269, 526
BseMII CTCAG 2 cut(s) 512, 546
BseRI GAGGAG 2 cut(s) 97, 235
BseSI GKGCMC 2 cut(s) 277, 472
BseXI GCAGC 3 cut(s) 304, 307, 436
BseYI CCCAGC 1 cut(s) 144
BshFI GGCC 4 cut(s) 68, 188, 267, 519
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 2 cut(s) 277, 472
BsiHKCI CYCGRG 2 cut(s) 14, 118
BsiSI CCGG 3 cut(s) 127, 138, 425
BslI CCNNNNNNNGG 4 cut(s) 15, 120, 269, 526
BsnI GGCC 4 cut(s) 68, 188, 267, 519
BsoBI CYCGRG 2 cut(s) 14, 118
Bsp1286I GDGCHC 3 cut(s) 145, 277, 472
Bsp13I TCCGGA 1 cut(s) 126
Bsp143I GATC 3 cut(s) 123, 361, 489
Bsp19I CCATGG 2 cut(s) 63, 183
BspACI CCGC 2 cut(s) 69, 189
BspANI GGCC 4 cut(s) 68, 188, 267, 519
BspCNI CTCAG 2 cut(s) 513, 547
BspEI TCCGGA 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 125, 136, 142
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 2 cut(s) 118, 131
BspT107I GGYRCC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 5 cut(s) 13, 63, 183, 262, 268
BssMI GATC 3 cut(s) 123, 361, 489
BssNI GRCGYC 3 cut(s) 135, 153, 219
BssT1I CCWWGG 3 cut(s) 63, 183, 268
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 3 cut(s) 135, 153, 219
BstBAI YACGTR 2 cut(s) 467, 473
BstC8I GCNNGC 2 cut(s) 422, 426
BstDEI CTNAG 2 cut(s) 521, 555
BstDSI CCRYGG 2 cut(s) 63, 183
BstENI CCTNNNNNAGG 1 cut(s) 267
BstF5I GGATG 2 cut(s) 110, 376
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 126, 364, 492
BstMBI GATC 3 cut(s) 123, 361, 489
BstMWI GCNNNNNNNGC 3 cut(s) 65, 77, 227
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 1 cut(s) 516
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 321
BstSLI GKGCMC 2 cut(s) 277, 472
BstV1I GCAGC 3 cut(s) 304, 307, 436
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 4 cut(s) 68, 188, 267, 519
BtgI CCRYGG 2 cut(s) 63, 183
BtgZI GCGATG 1 cut(s) 61
BtsCI GGATG 2 cut(s) 110, 376
Cac8I GCNNGC 2 cut(s) 422, 426
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 386
CseI GACGC 2 cut(s) 142, 227
CviAII CATG 3 cut(s) 64, 184, 513
DdeI CTNAG 2 cut(s) 521, 555
DinI GGCGCC 1 cut(s) 136
DpnI GATC 3 cut(s) 125, 363, 491
DpnII GATC 3 cut(s) 123, 361, 489
EaeI YGGCCR 3 cut(s) 66, 186, 265
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco130I CCWWGG 3 cut(s) 63, 183, 268
Eco24I GRGCYC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 386
Eco72I CACGTG 1 cut(s) 473
Eco88I CYCGRG 2 cut(s) 14, 118
EcoNI CCTNNNNNAGG 1 cut(s) 267
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 3 cut(s) 63, 183, 268
EcoT38I GRGCYC 1 cut(s) 145
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 3 cut(s) 63, 183, 268
FaeI CATG 3 cut(s) 67, 187, 516
FaiI YATR 6 cut(s) 65, 185, 331, 416, 514, 537
FatI CATG 3 cut(s) 63, 183, 512
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 5 cut(s) 69, 189, 318, 321, 450
FokI GGATG 2 cut(s) 97, 383
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 5 cut(s) 69, 189, 318, 321, 450
FspBI CTAG 3 cut(s) 174, 401, 446
GlaI GCGC 1 cut(s) 136
GluI GCNGC 5 cut(s) 69, 189, 318, 321, 450
GsaI CCCAGC 1 cut(s) 148
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 4 cut(s) 68, 188, 267, 519
HapII CCGG 3 cut(s) 127, 138, 425
HgaI GACGC 2 cut(s) 142, 227
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 3 cut(s) 135, 153, 219
Hin1II CATG 3 cut(s) 67, 187, 516
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 3 cut(s) 404, 497, 557
HpaII CCGG 3 cut(s) 127, 138, 425
Hpy166II GTNNAC 2 cut(s) 275, 470
Hpy188I TCNGA 3 cut(s) 158, 167, 200
Hpy188III TCNNGA 2 cut(s) 127, 174
Hpy8I GTNNAC 2 cut(s) 275, 470
Hpy99I CGWCG 2 cut(s) 200, 221
HpyAV CCTTC 3 cut(s) 53, 124, 470
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4IV ACGT 3 cut(s) 435, 466, 472
HpyCH4V TGCA 5 cut(s) 4, 211, 275, 323, 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 77, 227
HpyF3I CTNAG 2 cut(s) 521, 555
HpySE526I ACGT 3 cut(s) 435, 466, 472
Hsp92I GRCGYC 3 cut(s) 135, 153, 219
Hsp92II CATG 3 cut(s) 67, 187, 516
HspAI GCGC 1 cut(s) 135
KasI GGCGCC 1 cut(s) 134
Kpn2I TCCGGA 1 cut(s) 126
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 3 cut(s) 123, 361, 489
LmnI GCTCC 1 cut(s) 140
Lsp1109I GCAGC 3 cut(s) 304, 307, 436
MaeI CTAG 3 cut(s) 174, 401, 446
MaeII ACGT 3 cut(s) 435, 466, 472
MaeIII GTNAC 3 cut(s) 436, 459, 508
MalI GATC 3 cut(s) 125, 363, 491
MboI GATC 3 cut(s) 123, 361, 489
MboII GAAGA 1 cut(s) 250
MflI RGATCY 1 cut(s) 123
MhlI GDGCHC 3 cut(s) 145, 277, 472
MlsI TGGCCA 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 267
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 2 cut(s) 178, 265
Mox20I TGGCCA 1 cut(s) 267
MroI TCCGGA 1 cut(s) 126
MroNI GCCGGC 1 cut(s) 424
MscI TGGCCA 1 cut(s) 267
MseI TTAA 1 cut(s) 21
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 487
MspI CCGG 3 cut(s) 127, 138, 425
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 65, 77, 227
NaeI GCCGGC 1 cut(s) 426
NarI GGCGCC 1 cut(s) 135
NcoI CCATGG 2 cut(s) 63, 183
NdeII GATC 3 cut(s) 123, 361, 489
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 3 cut(s) 67, 187, 516
NlaIV GGNNCC 3 cut(s) 125, 136, 142
NmeAIII GCCGAG 1 cut(s) 129
NmuCI GTSAC 2 cut(s) 436, 508
NspI RCATGY 1 cut(s) 516
PciI ACATGT 1 cut(s) 512
PdiI GCCGGC 1 cut(s) 426
PfeI GAWTC 2 cut(s) 404, 497
PkrI GCNGC 5 cut(s) 70, 190, 319, 322, 451
PleI GAGTC 1 cut(s) 565
PluTI GGCGCC 1 cut(s) 138
PmaCI CACGTG 1 cut(s) 473
PmlI CACGTG 1 cut(s) 473
PpsI GAGTC 1 cut(s) 565
Ppu21I YACGTR 2 cut(s) 467, 473
PscI ACATGT 1 cut(s) 512
PsiI TTATAA 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 262
PspCI CACGTG 1 cut(s) 473
PspFI CCCAGC 1 cut(s) 144
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 3 cut(s) 125, 136, 142
PspPI GGNCC 1 cut(s) 386
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 123
PvuII CAGCTG 1 cut(s) 487
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 5 cut(s) 69, 189, 318, 321, 450
Sau3AI GATC 3 cut(s) 123, 361, 489
Sau96I GGNCC 1 cut(s) 386
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 3 cut(s) 145, 277, 472
SfcI CTRYAG 1 cut(s) 321
SfoI GGCGCC 1 cut(s) 136
SinI GGWCC 1 cut(s) 386
SsiI CCGC 2 cut(s) 69, 189
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 3 cut(s) 174, 401, 446
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 3 cut(s) 63, 183, 268
TaaI ACNGT 1 cut(s) 412
TaiI ACGT 3 cut(s) 438, 469, 475
TaqII GACCGA 1 cut(s) 403
TauI GCSGC 2 cut(s) 71, 191
TfiI GAWTC 2 cut(s) 404, 497
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 2 cut(s) 436, 508
TseI GCWGC 3 cut(s) 317, 320, 449
Tsp45I GTSAC 2 cut(s) 436, 508
TspGWI ACGGA 1 cut(s) 184
VneI GTGCAC 2 cut(s) 273, 468
VpaK11BI GGWCC 1 cut(s) 386
XagI CCTNNNNNAGG 1 cut(s) 267
XbaI TCTAGA 1 cut(s) 173
XceI RCATGY 1 cut(s) 516
XspI CTAG 3 cut(s) 174, 401, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.