Rroxscaffold_1G00009600

malonyl-CoA-acyl carrier protein transacylase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
12154436 .. 12157123
2688 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009600.1

Sequence Viewer

Length: 1098 bp
ATGTCCGCCGCCTCTCTCGCCGTCTCCCCCATTGCTCTCAACTTTTCCGGGCTCCGAAATGGCACCTCCCGCCCCGTCCTCGGGGTCCGGAACCTCGGCCGATCTAGGGTTTCCATGAGCGTCTCCGTCGGATCATCGCCGGTTGTAATCGACGACGCCTTGTTCGCCGATTACAAGCCCACCAATGCTTTCCTCTTCCCCGGCCAAGGTGCACAAGCACTTGGAATGGGAAAGGAAGCTCAGAGTGTACCGGCAGCTGCAGAGTTGTACAAGAAAGCAAACGATATTTTAGGGTTTGATCTTTTGGATGTTTGTATCAATGGACCGAAAGAGAAGCTTGATTCTACTGTTATAAGCCAGCCAGCTCTTTATGTCACAAGTCTAGCTGCTGTTGAGTTGCTTCGTGCACGTGATGGAGGTCAGCAGATCATTGATTCTGTTGATGTTACATGTGGTCTAAGTTTGGGAGAATATACTGCTCTGGCATTTGCTGGTTCATTTAGCTTTGAGGATGGGCTCAAGCTGGTTAAACTGAGGGGAGAAGCTATGCAGGAAGCTGCTGATGCTGCCAAAGGTGCCATGGTCAGTGTCATAGGGTTAGATTCAGACAAGGTTCAACAGTTGTGTGATGCAGCCAATGAAGAAGTTGATGACAAAGACAAAGTTCAAATTGCAAATTACCTATGTACTGGAAACTATGCTGTATCTGGAGGTGTGAAAGGAGTGGAAGCACTAGAAGCCAAGGCAAAGTCATTCAAGGCCCGAATGACGGTGCGTCTAGCTGTTGCTGGTGCTTTCCACACTAGATTTATGGACCCAGCTGTATCAAGATTGGAAGCAAAATTGGCAGCAACACAGATTAGACCTCCAAAAATACCAGTAATCTCCAACGTTGATGCACAGCCACATTCGGACCCTGAAGTGATTAAGAAAATATTGGCTCGCCAGGTGACTTCCCCTGTTCAATGGGAAACAACAGTCAAGACTCTCCTTTCCAAGGGTCTGAAGAAGAGTTATGAATTGGGACCTGGAAAGGTCATTGCTGGTATTGTGAAGAGAATGGATAGAGGCGCCGAAATTGAGAACATTGGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

365

Amino Acids

38.51

Weight (kDa)

8.2

Isoelectric Point (pI)

29.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyl_transf_1 PF00698 64 - 334 2.2e-29 Acyl transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012502)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 353
AccB1I GGYRCC 3 cut(s) 62, 575, 1070
AccIII TCCGGA 1 cut(s) 87
AciI CCGC 3 cut(s) 6, 9, 70
AclI AACGTT 1 cut(s) 891
AclWI GGATC 1 cut(s) 139
AcoI YGGCCR 2 cut(s) 97, 202
AcuI CTGAAG 2 cut(s) 939, 1025
AcvI CACGTG 1 cut(s) 410
AcyI GRCGYC 2 cut(s) 156, 1071
AfaI GTAC 3 cut(s) 249, 269, 688
AfiI CCNNNNNNNGG 6 cut(s) 80, 81, 106, 206, 769, 997
AflIII ACRYGT 1 cut(s) 449
AgsI TTSAA 4 cut(s) 617, 668, 757, 965
AhdI GACNNNNNGTC 1 cut(s) 774
AjnI CCWGG 2 cut(s) 945, 1027
Alw21I GWGCWC 2 cut(s) 214, 409
Alw26I GTCTC 2 cut(s) 28, 127
Alw44I GTGCAC 2 cut(s) 210, 405
AlwI GGATC 1 cut(s) 139
Ama87I CYCGRG 1 cut(s) 80
Aor13HI TCCGGA 1 cut(s) 87
AoxI GGCC 3 cut(s) 97, 202, 759
ApaLI GTGCAC 2 cut(s) 210, 405
ApeKI GCWGC 7 cut(s) 254, 257, 386, 557, 566, 632, 848
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspLEI GCGC 1 cut(s) 1073
AspS9I GGNCC 6 cut(s) 85, 323, 760, 814, 913, 1025
AsuC2I CCSGG 2 cut(s) 49, 201
AsuHPI GGTGA 1 cut(s) 961
AvaI CYCGRG 1 cut(s) 80
AvaII GGWCC 5 cut(s) 85, 323, 814, 913, 1025
BaeGI GKGCMC 2 cut(s) 214, 409
BanI GGYRCC 3 cut(s) 62, 575, 1070
BanII GRGCYC 2 cut(s) 54, 519
BbrPI CACGTG 1 cut(s) 410
Bbv12I GWGCWC 2 cut(s) 214, 409
BbvI GCAGC 7 cut(s) 244, 266, 373, 544, 553, 644, 860
BccI CCATC 2 cut(s) 407, 506
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 947, 1029
BcnI CCSGG 2 cut(s) 49, 201
BcoDI GTCTC 2 cut(s) 28, 127
BfaI CTAG 5 cut(s) 105, 383, 734, 779, 804
BfmI CTRYAG 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 1074
BisI GCNGC 8 cut(s) 9, 255, 258, 387, 558, 567, 633, 849
BlsI GCNGC 8 cut(s) 10, 256, 259, 388, 559, 568, 634, 850
Bme1390I CCNGG 4 cut(s) 49, 201, 947, 1029
Bme18I GGWCC 5 cut(s) 85, 323, 814, 913, 1025
BmeRI GACNNNNNGTC 1 cut(s) 774
BmeT110I CYCGRG 1 cut(s) 80
BmgT120I GGNCC 6 cut(s) 85, 323, 760, 814, 913, 1025
BmiI GGNNCC 9 cut(s) 53, 64, 86, 92, 577, 816, 915, 1026, 1072
BmrFI CCNGG 4 cut(s) 49, 201, 947, 1029
BmsI GCATC 3 cut(s) 553, 619, 886
BpmI CTGGAG 1 cut(s) 729
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 2 cut(s) 49, 201
BsaAI YACGTR 1 cut(s) 410
BsaHI GRCGYC 2 cut(s) 156, 1071
BsaJI CCNNGG 7 cut(s) 79, 94, 199, 205, 579, 741, 996
BsaWI WCCGGW 1 cut(s) 87
Bsc4I CCNNNNNNNGG 6 cut(s) 80, 81, 106, 206, 769, 997
Bse118I RCCGGY 2 cut(s) 139, 250
Bse1I ACTGG 2 cut(s) 694, 878
Bse3DI GCAATG 2 cut(s) 30, 1038
BseAI TCCGGA 1 cut(s) 87
BseBI CCWGG 2 cut(s) 947, 1029
BseDI CCNNGG 7 cut(s) 79, 94, 199, 205, 579, 741, 996
BseGI GGATG 2 cut(s) 313, 517
BseLI CCNNNNNNNGG 6 cut(s) 80, 81, 106, 206, 769, 997
BseMI GCAATG 2 cut(s) 30, 1038
BseMII CTCAG 2 cut(s) 254, 524
BseNI ACTGG 2 cut(s) 694, 878
BseSI GKGCMC 2 cut(s) 214, 409
BseX3I CGGCCG 1 cut(s) 97
BseXI GCAGC 7 cut(s) 244, 266, 373, 544, 553, 644, 860
BseYI CCCAGC 1 cut(s) 817
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 3 cut(s) 99, 204, 761
BshNI GGYRCC 3 cut(s) 62, 575, 1070
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 2 cut(s) 214, 409
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 5 cut(s) 48, 88, 140, 201, 251
BslFI GGGAC 1 cut(s) 1038
BslI CCNNNNNNNGG 6 cut(s) 80, 81, 106, 206, 769, 997
BsmAI GTCTC 2 cut(s) 28, 127
BsmBI CGTCTC 2 cut(s) 28, 127
BsmFI GGGAC 1 cut(s) 1038
BsnI GGCC 3 cut(s) 99, 204, 761
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 4 cut(s) 54, 214, 409, 519
Bsp13I TCCGGA 1 cut(s) 87
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 4 cut(s) 101, 131, 298, 426
Bsp19I CCATGG 1 cut(s) 579
BspACI CCGC 3 cut(s) 6, 9, 70
BspANI GGCC 3 cut(s) 99, 204, 761
BspCNI CTCAG 2 cut(s) 253, 525
BspEI TCCGGA 1 cut(s) 87
BspLI GGNNCC 9 cut(s) 53, 64, 86, 92, 577, 816, 915, 1026, 1072
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 139
BspT107I GGYRCC 3 cut(s) 62, 575, 1070
BsrDI GCAATG 2 cut(s) 30, 1038
BsrFI RCCGGY 2 cut(s) 139, 250
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 2 cut(s) 694, 878
BssAI RCCGGY 2 cut(s) 139, 250
BssECI CCNNGG 7 cut(s) 79, 94, 199, 205, 579, 741, 996
BssMI GATC 4 cut(s) 101, 131, 298, 426
BssNI GRCGYC 2 cut(s) 156, 1071
BssT1I CCWWGG 4 cut(s) 205, 579, 741, 996
Bst2UI CCWGG 2 cut(s) 947, 1029
Bst4CI ACNGT 4 cut(s) 349, 621, 772, 979
Bst6I CTCTTC 3 cut(s) 200, 1004, 1049
BstACI GRCGYC 2 cut(s) 156, 1071
BstAUI TGTACA 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 410
BstC8I GCNNGC 3 cut(s) 359, 363, 943
BstDEI CTNAG 3 cut(s) 240, 458, 533
BstDSI CCRYGG 1 cut(s) 579
BstENI CCTNNNNNAGG 1 cut(s) 995
BstF5I GGATG 2 cut(s) 313, 517
BstH2I RGCGCY 1 cut(s) 1074
BstHHI GCGC 1 cut(s) 1073
BstKTI GATC 4 cut(s) 104, 134, 301, 429
BstMAI GTCTC 2 cut(s) 28, 127
BstMBI GATC 4 cut(s) 101, 131, 298, 426
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 8 cut(s) 17, 69, 164, 563, 566, 575, 737, 845
BstNI CCWGG 2 cut(s) 947, 1029
BstNSI RCATGY 1 cut(s) 453
BstSCI CCNGG 4 cut(s) 47, 199, 945, 1027
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 2 cut(s) 214, 409
BstV1I GCAGC 7 cut(s) 244, 266, 373, 544, 553, 644, 860
BstZI CGGCCG 1 cut(s) 97
BsuRI GGCC 3 cut(s) 99, 204, 761
BtgI CCRYGG 1 cut(s) 579
BtgZI GCGATG 1 cut(s) 120
BtsCI GGATG 2 cut(s) 313, 517
BtsIMutI CAGTG 1 cut(s) 592
Cac8I GCNNGC 3 cut(s) 359, 363, 943
CfoI GCGC 1 cut(s) 1073
Cfr10I RCCGGY 2 cut(s) 139, 250
Cfr13I GGNCC 6 cut(s) 85, 323, 760, 814, 913, 1025
CseI GACGC 3 cut(s) 109, 164, 764
Csp6I GTAC 3 cut(s) 248, 268, 687
CviAII CATG 3 cut(s) 115, 450, 580
CviQI GTAC 3 cut(s) 248, 268, 687
DdeI CTNAG 3 cut(s) 240, 458, 533
DinI GGCGCC 1 cut(s) 1072
DpnI GATC 4 cut(s) 103, 133, 300, 428
DpnII GATC 4 cut(s) 101, 131, 298, 426
DriI GACNNNNNGTC 1 cut(s) 774
EaeI YGGCCR 2 cut(s) 97, 202
EagI CGGCCG 1 cut(s) 97
Eam1104I CTCTTC 3 cut(s) 200, 1004, 1049
Eam1105I GACNNNNNGTC 1 cut(s) 774
EarI CTCTTC 3 cut(s) 200, 1004, 1049
EclXI CGGCCG 1 cut(s) 97
Eco130I CCWWGG 4 cut(s) 205, 579, 741, 996
Eco24I GRGCYC 2 cut(s) 54, 519
Eco47I GGWCC 5 cut(s) 85, 323, 814, 913, 1025
Eco52I CGGCCG 1 cut(s) 97
Eco57I CTGAAG 2 cut(s) 939, 1025
Eco72I CACGTG 1 cut(s) 410
Eco88I CYCGRG 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 995
EcoO109I RGGNCCY 1 cut(s) 1025
EcoRII CCWGG 2 cut(s) 945, 1027
EcoT14I CCWWGG 4 cut(s) 205, 579, 741, 996
EcoT38I GRGCYC 2 cut(s) 54, 519
EgeI GGCGCC 1 cut(s) 1072
EheI GGCGCC 1 cut(s) 1072
ErhI CCWWGG 4 cut(s) 205, 579, 741, 996
Esp3I CGTCTC 2 cut(s) 28, 127
FaeI CATG 3 cut(s) 118, 453, 583
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 1 cut(s) 1038
FatI CATG 3 cut(s) 114, 449, 579
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 8 cut(s) 9, 255, 258, 387, 558, 567, 633, 849
FokI GGATG 2 cut(s) 320, 524
FriOI GRGCYC 2 cut(s) 54, 519
Fsp4HI GCNGC 8 cut(s) 9, 255, 258, 387, 558, 567, 633, 849
FspBI CTAG 5 cut(s) 105, 383, 734, 779, 804
GlaI GCGC 1 cut(s) 1072
GluI GCNGC 8 cut(s) 9, 255, 258, 387, 558, 567, 633, 849
GsaI CCCAGC 1 cut(s) 821
GsuI CTGGAG 1 cut(s) 729
HaeII RGCGCY 1 cut(s) 1074
HaeIII GGCC 3 cut(s) 99, 204, 761
HapII CCGG 5 cut(s) 48, 88, 140, 201, 251
HgaI GACGC 3 cut(s) 109, 164, 764
HhaI GCGC 1 cut(s) 1073
Hin1I GRCGYC 2 cut(s) 156, 1071
Hin1II CATG 3 cut(s) 118, 453, 583
Hin6I GCGC 1 cut(s) 1071
HinP1I GCGC 1 cut(s) 1071
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 4 cut(s) 341, 434, 602, 985
HpaII CCGG 5 cut(s) 48, 88, 140, 201, 251
HphI GGTGA 1 cut(s) 961
Hpy166II GTNNAC 3 cut(s) 212, 248, 407
Hpy188I TCNGA 6 cut(s) 56, 131, 243, 607, 913, 1005
Hpy188III TCNNGA 4 cut(s) 88, 708, 828, 982
Hpy8I GTNNAC 3 cut(s) 212, 248, 407
Hpy99I CGWCG 3 cut(s) 131, 155, 158
HpyCH4III ACNGT 4 cut(s) 349, 621, 772, 979
HpyCH4IV ACGT 2 cut(s) 409, 891
HpyCH4V TGCA 7 cut(s) 212, 260, 407, 550, 632, 674, 899
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 69, 164, 563, 566, 575, 737, 845
HpyF3I CTNAG 3 cut(s) 240, 458, 533
HpySE526I ACGT 2 cut(s) 409, 891
Hsp92I GRCGYC 2 cut(s) 156, 1071
Hsp92II CATG 3 cut(s) 118, 453, 583
HspAI GCGC 1 cut(s) 1071
KasI GGCGCC 1 cut(s) 1070
Kpn2I TCCGGA 1 cut(s) 87
Kzo9I GATC 4 cut(s) 101, 131, 298, 426
LmnI GCTCC 2 cut(s) 57, 1091
Lsp1109I GCAGC 7 cut(s) 244, 266, 373, 544, 553, 644, 860
LweI GCATC 3 cut(s) 553, 619, 886
MaeI CTAG 5 cut(s) 105, 383, 734, 779, 804
MaeII ACGT 2 cut(s) 409, 891
MaeIII GTNAC 3 cut(s) 373, 445, 949
MalI GATC 4 cut(s) 103, 133, 300, 428
MboI GATC 4 cut(s) 101, 131, 298, 426
MboII GAAGA 5 cut(s) 187, 653, 1018, 1021, 1066
MhlI GDGCHC 4 cut(s) 54, 214, 409, 519
MluCI AATT 5 cut(s) 669, 676, 842, 1019, 1077
Mly113I GGCGCC 1 cut(s) 1071
MlyI GAGTC 1 cut(s) 979
MmeI TCCRAC 2 cut(s) 109, 912
MroI TCCGGA 1 cut(s) 87
MseI TTAA 2 cut(s) 528, 927
MspA1I CMGCKG 2 cut(s) 257, 821
MspI CCGG 5 cut(s) 48, 88, 140, 201, 251
MspR9I CCNGG 4 cut(s) 49, 201, 947, 1029
MvaI CCWGG 2 cut(s) 947, 1029
MwoI GCNNNNNNNGC 8 cut(s) 17, 69, 164, 563, 566, 575, 737, 845
NarI GGCGCC 1 cut(s) 1071
NciI CCSGG 2 cut(s) 49, 201
NcoI CCATGG 1 cut(s) 579
NdeII GATC 4 cut(s) 101, 131, 298, 426
NlaIII CATG 3 cut(s) 118, 453, 583
NlaIV GGNNCC 9 cut(s) 53, 64, 86, 92, 577, 816, 915, 1026, 1072
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 373, 949
NspI RCATGY 1 cut(s) 453
PciI ACATGT 1 cut(s) 449
PfeI GAWTC 3 cut(s) 341, 434, 602
PkrI GCNGC 8 cut(s) 10, 256, 259, 388, 559, 568, 634, 850
PleI GAGTC 1 cut(s) 979
PluTI GGCGCC 1 cut(s) 1074
PmaCI CACGTG 1 cut(s) 410
PmlI CACGTG 1 cut(s) 410
PpsI GAGTC 1 cut(s) 979
Ppu21I YACGTR 1 cut(s) 410
PpuMI RGGWCCY 1 cut(s) 1025
PscI ACATGT 1 cut(s) 449
PsiI TTATAA 1 cut(s) 353
Psp1406I AACGTT 1 cut(s) 891
Psp5II RGGWCCY 1 cut(s) 1025
Psp6I CCWGG 2 cut(s) 945, 1027
PspCI CACGTG 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 817
PspGI CCWGG 2 cut(s) 945, 1027
PspN4I GGNNCC 9 cut(s) 53, 64, 86, 92, 577, 816, 915, 1026, 1072
PspPI GGNCC 6 cut(s) 85, 323, 760, 814, 913, 1025
PspPPI RGGWCCY 1 cut(s) 1025
PstI CTGCAG 1 cut(s) 262
PvuII CAGCTG 2 cut(s) 257, 821
RsaI GTAC 3 cut(s) 249, 269, 688
RsaNI GTAC 3 cut(s) 248, 268, 687
SaqAI TTAA 2 cut(s) 528, 927
SatI GCNGC 8 cut(s) 9, 255, 258, 387, 558, 567, 633, 849
Sau3AI GATC 4 cut(s) 101, 131, 298, 426
Sau96I GGNCC 6 cut(s) 85, 323, 760, 814, 913, 1025
SchI GAGTC 1 cut(s) 979
ScrFI CCNGG 4 cut(s) 49, 201, 947, 1029
SduI GDGCHC 4 cut(s) 54, 214, 409, 519
SfaNI GCATC 3 cut(s) 553, 619, 886
SfcI CTRYAG 1 cut(s) 258
SfoI GGCGCC 1 cut(s) 1072
SinI GGWCC 5 cut(s) 85, 323, 814, 913, 1025
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 5 cut(s) 669, 676, 842, 1019, 1077
SsiI CCGC 3 cut(s) 6, 9, 70
SspDI GGCGCC 1 cut(s) 1070
SspI AATATT 1 cut(s) 936
SspMI CTAG 5 cut(s) 105, 383, 734, 779, 804
StyD4I CCNGG 4 cut(s) 47, 199, 945, 1027
StyI CCWWGG 4 cut(s) 205, 579, 741, 996
TaaI ACNGT 4 cut(s) 349, 621, 772, 979
TaiI ACGT 2 cut(s) 412, 894
TaqI TCGA 1 cut(s) 150
TaqII GACCGA 1 cut(s) 340
TasI AATT 5 cut(s) 669, 676, 842, 1019, 1077
TatI WGTACW 2 cut(s) 267, 686
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 3 cut(s) 341, 434, 602
Tru1I TTAA 2 cut(s) 528, 927
Tru9I TTAA 2 cut(s) 528, 927
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 2 cut(s) 373, 949
TseI GCWGC 7 cut(s) 254, 257, 386, 557, 566, 632, 848
Tsp45I GTSAC 2 cut(s) 373, 949
TspDTI ATGAA 3 cut(s) 486, 654, 1032
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 1 cut(s) 592
VneI GTGCAC 2 cut(s) 210, 405
VpaK11BI GGWCC 5 cut(s) 85, 323, 814, 913, 1025
XagI CCTNNNNNAGG 1 cut(s) 995
XceI RCATGY 1 cut(s) 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XspI CTAG 5 cut(s) 105, 383, 734, 779, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.