FvH4_3g39780

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018013
Physical Location & Seq
Reverse (-)
33722460 .. 33723478
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39780.t1

Sequence Viewer

Length: 627 bp
ATGTCCTCGTCCTCCTCGATCCCAATGTCCTCGCAGCAATCCACCCAGGAGCCCTCATTTCCTCTCCCGTCGTTCCGATCCATCCTCACGCGCCTCTCCGGCCTCTCCCGCCACGCGCTCGCCAACCGCCGTCCCTGGGCCGAGCTCGTCGACCGCACCGCCTTCTCCCGGCCGGTCTCCTTCTCCGACGCGGCCTCGCGCGTGAGGAAGAACGCCGCCTACTTCCGCGTCAACTACCTGATCGTACTCGCCGCCGTGCTCGCCTACTCGCTCCTCTCCCACCCCTTCACTCTCCTCACCCTAGTCGGCCTCGCCGCCGCGTGGATCTTCCTCTACTCGCACCGCCAGTCGGATCAGCCGCTCGTGATCTTGGGCCGGGCCTACTCCGACACGCAGGTGCTGTTTGGGCTGGGCCTGGTGACGCTGGTCGCGATCTTGGTGACGAGCGTGTTGTCGCTGCTCATAACGGCGGTGATGGTTGGGGTTGGGATCGTCTCTGCTCACGGCGCGTTTAGGGATCCGGAGGATCTGTTCTTGGACGAATCGCAGCCGTTGGGCTCTGGATTCGCTTCCATGTTCAGTGGGGCTGCTTCTTCTGCTGGCGCCAGCATGATGTCACGTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

209

Amino Acids

22.3

Weight (kDa)

9.96

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 39 - 181 5.1e-47 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018013)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39780
malus_domestica MD03G1056700.v1.1 MD11G1058500.v1.1
prunus_persica Prupe.6G048100_v2.0.a1
pyrus_communis pycom03g04510
rosa_chinensis RchiOBHm_Chr5g0071661
rosa_multiflora Rmu_sc0005745.1_g000036
rosa_roxburghii Rroxscaffold_1G00009510
rosa_rugosa Rorug05G0414100
rosa_samantha Rh5BG489600
rosa_wichuraiana Rw5G043670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 602
AccBSI CCGCTC 1 cut(s) 361
AccI GTMKAC 1 cut(s) 150
AccII CGCG 9 cut(s) 91, 116, 191, 199, 201, 228, 320, 431, 509
AccIII TCCGGA 1 cut(s) 520
AclWI GGATC 8 cut(s) 13, 72, 332, 360, 497, 512, 525, 534
AcoI YGGCCR 1 cut(s) 170
AcvI CACGTG 1 cut(s) 620
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 4 cut(s) 136, 168, 321, 349
AflIII ACRYGT 1 cut(s) 619
AjnI CCWGG 3 cut(s) 45, 134, 414
AleI CACNNNNGTG 1 cut(s) 395
AloI GAACNNNNNNTCC 2 cut(s) 515, 547
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
Alw21I GWGCWC 2 cut(s) 147, 261
Alw26I GTCTC 2 cut(s) 181, 499
AlwI GGATC 8 cut(s) 13, 72, 332, 360, 497, 512, 525, 534
AlwNI CAGNNNCTG 1 cut(s) 400
Aor13HI TCCGGA 1 cut(s) 520
AoxI GGCC 8 cut(s) 100, 138, 170, 192, 307, 373, 378, 412
ApeKI GCWGC 4 cut(s) 34, 457, 547, 587
AspLEI GCGC 5 cut(s) 93, 118, 201, 509, 605
AspS9I GGNCC 4 cut(s) 138, 373, 378, 412
AsuC2I CCSGG 2 cut(s) 169, 377
AsuHPI GGTGA 4 cut(s) 289, 430, 451, 484
BamHI GGATCC 1 cut(s) 517
BanI GGYRCC 1 cut(s) 602
BanII GRGCYC 3 cut(s) 54, 147, 560
BauI CACGAG 1 cut(s) 362
BbrPI CACGTG 1 cut(s) 620
Bbv12I GWGCWC 2 cut(s) 147, 261
BbvI GCAGC 4 cut(s) 46, 444, 559, 574
BccI CCATC 2 cut(s) 89, 469
BceAI ACGGC 5 cut(s) 114, 239, 483, 520, 535
BciT130I CCWGG 3 cut(s) 47, 136, 416
BcnI CCSGG 2 cut(s) 169, 377
BcoDI GTCTC 2 cut(s) 181, 499
BfaI CTAG 2 cut(s) 302, 625
BfoI RGCGCY 1 cut(s) 606
BfuAI ACCTGC 1 cut(s) 385
BglI GCCNNNNNGGC 1 cut(s) 99
Bme1390I CCNGG 5 cut(s) 47, 136, 169, 377, 416
BmgT120I GGNCC 4 cut(s) 138, 373, 378, 412
BmiI GGNNCC 3 cut(s) 51, 519, 604
BmrFI CCNGG 5 cut(s) 47, 136, 169, 377, 416
BoxI GACNNNNGTC 1 cut(s) 425
BpuMI CCSGG 2 cut(s) 169, 377
BsaAI YACGTR 1 cut(s) 620
BsaHI GRCGYC 1 cut(s) 603
BsaI GGTCTC 1 cut(s) 181
BsaJI CCNNGG 3 cut(s) 45, 134, 135
BsaWI WCCGGW 1 cut(s) 520
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 168, 321, 349
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 1 cut(s) 346
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 3 cut(s) 47, 136, 416
BseDI CCNNGG 3 cut(s) 45, 134, 135
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 136, 168, 321, 349
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 3 cut(s) 4, 263, 284
BseX3I CGGCCG 1 cut(s) 170
BseXI GCAGC 4 cut(s) 46, 444, 559, 574
BseYI CCCAGC 1 cut(s) 409
Bsh1236I CGCG 9 cut(s) 91, 116, 191, 199, 201, 228, 320, 431, 509
Bsh1285I CGRYCG 2 cut(s) 154, 173
BshFI GGCC 8 cut(s) 102, 140, 172, 194, 309, 375, 380, 414
BshNI GGYRCC 1 cut(s) 602
BsiEI CGRYCG 2 cut(s) 154, 173
BsiHKAI GWGCWC 2 cut(s) 147, 261
BsiSI CCGG 5 cut(s) 99, 169, 173, 376, 521
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 4 cut(s) 136, 168, 321, 349
BsmAI GTCTC 2 cut(s) 181, 499
BsmBI CGTCTC 1 cut(s) 499
BsmFI GGGAC 1 cut(s) 117
BsnI GGCC 8 cut(s) 102, 140, 172, 194, 309, 375, 380, 414
Bso31I GGTCTC 1 cut(s) 181
Bsp1286I GDGCHC 4 cut(s) 54, 147, 261, 560
Bsp13I TCCGGA 1 cut(s) 520
Bsp68I TCGCGA 1 cut(s) 431
BspANI GGCC 8 cut(s) 102, 140, 172, 194, 309, 375, 380, 414
BspEI TCCGGA 1 cut(s) 520
BspFNI CGCG 9 cut(s) 91, 116, 191, 199, 201, 228, 320, 431, 509
BspLI GGNNCC 3 cut(s) 51, 519, 604
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 8 cut(s) 13, 72, 332, 360, 497, 512, 525, 534
BspT107I GGYRCC 1 cut(s) 602
BspTNI GGTCTC 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 1 cut(s) 346
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 3 cut(s) 45, 134, 135
BssNI GRCGYC 1 cut(s) 603
BssSI CACGAG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 362
Bst2UI CCWGG 3 cut(s) 47, 136, 416
BstACI GRCGYC 1 cut(s) 603
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 4 cut(s) 120, 261, 601, 607
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 9 cut(s) 91, 116, 191, 199, 201, 228, 320, 431, 509
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 5 cut(s) 93, 118, 201, 509, 605
BstMAI GTCTC 2 cut(s) 181, 499
BstMCI CGRYCG 2 cut(s) 154, 173
BstMWI GCNNNNNNNGC 6 cut(s) 99, 108, 260, 406, 506, 596
BstNI CCWGG 3 cut(s) 47, 136, 416
BstPAI GACNNNNGTC 1 cut(s) 425
BstSCI CCNGG 5 cut(s) 45, 134, 167, 375, 414
BstUI CGCG 9 cut(s) 91, 116, 191, 199, 201, 228, 320, 431, 509
BstV1I GCAGC 4 cut(s) 46, 444, 559, 574
BstX2I RGATCY 3 cut(s) 324, 517, 526
BstYI RGATCY 3 cut(s) 324, 517, 526
BstZI CGGCCG 1 cut(s) 170
BsuRI GGCC 8 cut(s) 102, 140, 172, 194, 309, 375, 380, 414
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 586
BtuMI TCGCGA 1 cut(s) 431
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 4 cut(s) 120, 261, 601, 607
CaiI CAGNNNCTG 1 cut(s) 400
CfoI GCGC 5 cut(s) 93, 118, 201, 509, 605
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 4 cut(s) 138, 373, 378, 412
CseI GACGC 3 cut(s) 197, 217, 430
Csp6I GTAC 1 cut(s) 245
CviAII CATG 2 cut(s) 574, 610
CviQI GTAC 1 cut(s) 245
DinI GGCGCC 1 cut(s) 604
EaeI YGGCCR 1 cut(s) 170
EagI CGGCCG 1 cut(s) 170
Ecl136II GAGCTC 1 cut(s) 145
EclXI CGGCCG 1 cut(s) 170
Eco24I GRGCYC 3 cut(s) 54, 147, 560
Eco31I GGTCTC 1 cut(s) 181
Eco52I CGGCCG 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 145
Eco72I CACGTG 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 145
EcoRII CCWGG 3 cut(s) 45, 134, 414
EcoT38I GRGCYC 3 cut(s) 54, 147, 560
EgeI GGCGCC 1 cut(s) 604
EheI GGCGCC 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 499
FaeI CATG 2 cut(s) 577, 613
FaiI YATR 3 cut(s) 464, 575, 611
FaqI GGGAC 1 cut(s) 117
FatI CATG 2 cut(s) 573, 609
FauI CCCGC 1 cut(s) 116
FblI GTMKAC 1 cut(s) 150
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 3 cut(s) 54, 147, 560
FspBI CTAG 2 cut(s) 302, 625
GlaI GCGC 5 cut(s) 92, 117, 200, 508, 604
GsaI CCCAGC 1 cut(s) 413
HaeII RGCGCY 1 cut(s) 606
HaeIII GGCC 8 cut(s) 102, 140, 172, 194, 309, 375, 380, 414
HapII CCGG 5 cut(s) 99, 169, 173, 376, 521
HgaI GACGC 3 cut(s) 197, 217, 430
HhaI GCGC 5 cut(s) 93, 118, 201, 509, 605
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 2 cut(s) 577, 613
Hin6I GCGC 5 cut(s) 91, 116, 199, 507, 603
HinP1I GCGC 5 cut(s) 91, 116, 199, 507, 603
HincII GTYRAC 2 cut(s) 151, 232
HindII GTYRAC 2 cut(s) 151, 232
HinfI GANTC 2 cut(s) 542, 564
HpaII CCGG 5 cut(s) 99, 169, 173, 376, 521
HphI GGTGA 4 cut(s) 289, 430, 451, 484
Hpy166II GTNNAC 2 cut(s) 151, 232
Hpy188I TCNGA 4 cut(s) 77, 187, 352, 388
Hpy188III TCNNGA 4 cut(s) 364, 430, 521, 561
Hpy8I GTNNAC 2 cut(s) 151, 232
Hpy99I CGWCG 3 cut(s) 73, 152, 191
HpyAV CCTTC 3 cut(s) 172, 190, 295
HpyCH4IV ACGT 1 cut(s) 619
HpyF10VI GCNNNNNNNGC 6 cut(s) 99, 108, 260, 406, 506, 596
HpySE526I ACGT 1 cut(s) 619
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 2 cut(s) 577, 613
HspAI GCGC 5 cut(s) 91, 116, 199, 507, 603
KasI GGCGCC 1 cut(s) 602
Kpn2I TCCGGA 1 cut(s) 520
LmnI GCTCC 2 cut(s) 49, 276
Lsp1109I GCAGC 4 cut(s) 46, 444, 559, 574
MaeI CTAG 2 cut(s) 302, 625
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 3 cut(s) 418, 439, 615
MbiI CCGCTC 1 cut(s) 361
MboII GAAGA 3 cut(s) 220, 319, 585
MflI RGATCY 3 cut(s) 324, 517, 526
MhlI GDGCHC 4 cut(s) 54, 147, 261, 560
Mly113I GGCGCC 1 cut(s) 603
MmeI TCCRAC 3 cut(s) 210, 330, 411
MroI TCCGGA 1 cut(s) 520
MslI CAYNNNNRTG 1 cut(s) 395
MspI CCGG 5 cut(s) 99, 169, 173, 376, 521
MspR9I CCNGG 5 cut(s) 47, 136, 169, 377, 416
MvaI CCWGG 3 cut(s) 47, 136, 416
MvnI CGCG 9 cut(s) 91, 116, 191, 199, 201, 228, 320, 431, 509
MwoI GCNNNNNNNGC 6 cut(s) 99, 108, 260, 406, 506, 596
NarI GGCGCC 1 cut(s) 603
NciI CCSGG 2 cut(s) 169, 377
NlaIII CATG 2 cut(s) 577, 613
NlaIV GGNNCC 3 cut(s) 51, 519, 604
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 3 cut(s) 418, 439, 615
NruI TCGCGA 1 cut(s) 431
OliI CACNNNNGTG 1 cut(s) 395
PaqCI CACCTGC 1 cut(s) 385
PasI CCCWGGG 1 cut(s) 135
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 428
PfeI GAWTC 2 cut(s) 542, 564
PluTI GGCGCC 1 cut(s) 606
PmaCI CACGTG 1 cut(s) 620
PmlI CACGTG 1 cut(s) 620
Ppu21I YACGTR 1 cut(s) 620
PshAI GACNNNNGTC 1 cut(s) 425
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 3 cut(s) 45, 134, 414
PspCI CACGTG 1 cut(s) 620
PspFI CCCAGC 1 cut(s) 409
PspGI CCWGG 3 cut(s) 45, 134, 414
PspN4I GGNNCC 3 cut(s) 51, 519, 604
PspPI GGNCC 4 cut(s) 138, 373, 378, 412
PsrI GAACNNNNNNTAC 2 cut(s) 203, 235
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 3 cut(s) 324, 517, 526
RruI TCGCGA 1 cut(s) 431
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 395
SacI GAGCTC 1 cut(s) 147
SalI GTCGAC 1 cut(s) 149
Sau96I GGNCC 4 cut(s) 138, 373, 378, 412
ScrFI CCNGG 5 cut(s) 47, 136, 169, 377, 416
SduI GDGCHC 4 cut(s) 54, 147, 261, 560
SetI ASST 4 cut(s) 147, 240, 399, 622
SfoI GGCGCC 1 cut(s) 604
SmiMI CAYNNNNRTG 1 cut(s) 395
SspDI GGCGCC 1 cut(s) 602
SspMI CTAG 2 cut(s) 302, 625
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 5 cut(s) 45, 134, 167, 375, 414
TaiI ACGT 1 cut(s) 622
TaqI TCGA 2 cut(s) 17, 150
TauI GCSGC 6 cut(s) 194, 218, 254, 317, 320, 361
TfiI GAWTC 2 cut(s) 542, 564
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 3 cut(s) 418, 439, 615
TseI GCWGC 4 cut(s) 34, 457, 547, 587
Tsp45I GTSAC 3 cut(s) 418, 439, 615
TspRI CASTG 1 cut(s) 586
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 2 cut(s) 302, 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.