MD03G1056700.v1.1

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0018013
Physical Location & Seq
Reverse (-)
4529838 .. 4530488
651 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1056700.v1.1.491

Sequence Viewer

Length: 651 bp
ATGTCCTCGCCTTCCCCGATCCCAGTTTCGTCCCAACAGTCCTCTCACCAGCAAACCCAACCGTCCGGCACCAACCCACTCCGATTCCTCCGCCCCTTCCTCACGCGCATCTCCGCCGTATCCCACCACGCGCTCTCCAACAGCCGCCCCTGGACCGAGCTCATCGACCGCACTGCCTTTACCAGACCCACCTCGCTCACCGATGCCGCCTCCCGGATCCGCAAGAACGCCGCCTACTTCCGCGTCAACTACCTCATCGTACTCGCAGTCGTACTCGCCTACTCCCTCATCTCCCACCCCTTCTCCCTCCTCACCCTCCTCACCCTCGCCGGAGCGTGGATCTTCCTCTACGCGCGCCGATCGTCGGAGCAGCCGCTGGTGATCCTTGGCCGCACGTTCTCCAACACCCAGGCGCTGTTCGGACTGGGCGTGGCGACGCTCATCGCGATCTTGGTGACGAGCGTGCTGTCGCTGCTGCTAACGGCGGGGATGGTGGGAGTTGGGATCGTGTGTGTTCACGGCGCATTCAGAGATCCTGAGGATCTGTTCCTGGACGAAACGCAGCCGTTGGGTTCTGGCATCGCTTCGATTTTCGGAGGTGGGGCCCCTTCGTTTGCGTCGGCGGGTGCCAGCATGATGTCACGTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

217

Amino Acids

23.1

Weight (kDa)

10.44

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 44 - 186 5.6e-46 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018013)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39780
malus_domestica MD03G1056700.v1.1 MD11G1058500.v1.1
prunus_persica Prupe.6G048100_v2.0.a1
pyrus_communis pycom03g04510
rosa_chinensis RchiOBHm_Chr5g0071661
rosa_multiflora Rmu_sc0005745.1_g000036
rosa_roxburghii Rroxscaffold_1G00009510
rosa_rugosa Rorug05G0414100
rosa_samantha Rh5BG489600
rosa_wichuraiana Rw5G043670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 68, 626
AccII CGCG 6 cut(s) 106, 131, 243, 353, 355, 446
AclWI GGATC 8 cut(s) 13, 211, 224, 347, 376, 512, 527, 549
AcoI YGGCCR 1 cut(s) 388
AcvI CACGTG 1 cut(s) 644
AfaI GTAC 2 cut(s) 261, 273
AfiI CCNNNNNNNGG 3 cut(s) 213, 336, 364
AflIII ACRYGT 1 cut(s) 643
AjnI CCWGG 3 cut(s) 149, 408, 549
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 162
AlwI GGATC 8 cut(s) 13, 211, 224, 347, 376, 512, 527, 549
AlwNI CAGNNNCTG 2 cut(s) 376, 415
AoxI GGCC 2 cut(s) 388, 603
ApaI GGGCCC 1 cut(s) 607
ApeKI GCWGC 4 cut(s) 370, 472, 475, 562
AspLEI GCGC 6 cut(s) 108, 133, 355, 357, 415, 524
AspS9I GGNCC 3 cut(s) 153, 603, 604
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 6 cut(s) 38, 190, 304, 313, 391, 466
AvaII GGWCC 1 cut(s) 153
AxyI CCTNAGG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 607
BamHI GGATCC 1 cut(s) 216
BanI GGYRCC 2 cut(s) 68, 626
BanII GRGCYC 2 cut(s) 162, 607
BbrPI CACGTG 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 4 cut(s) 382, 459, 462, 574
BccI CCATC 1 cut(s) 484
BceAI ACGGC 4 cut(s) 101, 498, 535, 550
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 3 cut(s) 151, 410, 551
BciVI GTATCC 1 cut(s) 130
BcnI CCSGG 1 cut(s) 214
BfaI CTAG 1 cut(s) 649
BfoI RGCGCY 1 cut(s) 416
BfuI GTATCC 1 cut(s) 130
BisI GCNGC 9 cut(s) 145, 207, 231, 371, 374, 391, 473, 476, 563
BlsI GCNGC 9 cut(s) 146, 208, 232, 372, 375, 392, 474, 477, 564
Bme1390I CCNGG 4 cut(s) 151, 214, 410, 551
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 3 cut(s) 153, 603, 604
BmiI GGNNCC 6 cut(s) 70, 218, 604, 605, 606, 628
BmrFI CCNGG 4 cut(s) 151, 214, 410, 551
BmrI ACTGGG 2 cut(s) 17, 434
BmsI GCATC 3 cut(s) 117, 193, 588
BmuI ACTGGG 2 cut(s) 17, 434
BpuMI CCSGG 1 cut(s) 214
BsaAI YACGTR 1 cut(s) 644
BsaJI CCNNGG 3 cut(s) 149, 385, 408
BsaXI ACNNNNNCTCC 4 cut(s) 119, 149, 287, 317
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 336, 364
Bse1I ACTGG 2 cut(s) 23, 429
Bse21I CCTNAGG 1 cut(s) 537
BseBI CCWGG 3 cut(s) 151, 410, 551
BseDI CCNNGG 3 cut(s) 149, 385, 408
BseGI GGATG 1 cut(s) 495
BseLI CCNNNNNNNGG 3 cut(s) 213, 336, 364
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 2 cut(s) 23, 429
BsePI GCGCGC 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 299, 308
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 4 cut(s) 382, 459, 462, 574
Bsh1236I CGCG 6 cut(s) 106, 131, 243, 353, 355, 446
Bsh1285I CGRYCG 2 cut(s) 169, 362
BshFI GGCC 2 cut(s) 390, 605
BshNI GGYRCC 2 cut(s) 68, 626
BsiEI CGRYCG 2 cut(s) 169, 362
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 3 cut(s) 66, 214, 330
BslFI GGGAC 1 cut(s) 16
BslI CCNNNNNNNGG 3 cut(s) 213, 336, 364
BsmFI GGGAC 1 cut(s) 16
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 2 cut(s) 390, 605
Bsp120I GGGCCC 1 cut(s) 603
Bsp1286I GDGCHC 2 cut(s) 162, 607
Bsp143I GATC 9 cut(s) 18, 216, 339, 359, 381, 447, 504, 532, 541
Bsp68I TCGCGA 1 cut(s) 446
BspANI GGCC 2 cut(s) 390, 605
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 6 cut(s) 106, 131, 243, 353, 355, 446
BspLI GGNNCC 6 cut(s) 70, 218, 604, 605, 606, 628
BspPI GGATC 8 cut(s) 13, 211, 224, 347, 376, 512, 527, 549
BspT107I GGYRCC 2 cut(s) 68, 626
BsrI ACTGG 2 cut(s) 23, 429
BssECI CCNNGG 3 cut(s) 149, 385, 408
BssHII GCGCGC 1 cut(s) 353
BssMI GATC 9 cut(s) 18, 216, 339, 359, 381, 447, 504, 532, 541
BssT1I CCWWGG 1 cut(s) 385
Bst2UI CCWGG 3 cut(s) 151, 410, 551
Bst4CI ACNGT 2 cut(s) 39, 63
BstBAI YACGTR 1 cut(s) 644
BstC8I GCNNGC 3 cut(s) 355, 464, 631
BstDEI CTNAG 1 cut(s) 537
BstF5I GGATG 1 cut(s) 495
BstFNI CGCG 6 cut(s) 106, 131, 243, 353, 355, 446
BstH2I RGCGCY 1 cut(s) 416
BstHHI GCGC 6 cut(s) 108, 133, 355, 357, 415, 524
BstKTI GATC 9 cut(s) 21, 219, 342, 362, 384, 450, 507, 535, 544
BstMBI GATC 9 cut(s) 18, 216, 339, 359, 381, 447, 504, 532, 541
BstMCI CGRYCG 2 cut(s) 169, 362
BstMWI GCNNNNNNNGC 1 cut(s) 472
BstNI CCWGG 3 cut(s) 151, 410, 551
BstSCI CCNGG 4 cut(s) 149, 212, 408, 549
BstSLI GKGCMC 1 cut(s) 607
BstUI CGCG 6 cut(s) 106, 131, 243, 353, 355, 446
BstV1I GCAGC 4 cut(s) 382, 459, 462, 574
BstX2I RGATCY 4 cut(s) 216, 339, 532, 541
BstYI RGATCY 4 cut(s) 216, 339, 532, 541
Bsu36I CCTNAGG 1 cut(s) 537
BsuI GTATCC 1 cut(s) 130
BsuRI GGCC 2 cut(s) 390, 605
BtgZI GCGATG 2 cut(s) 427, 565
BtsCI GGATG 1 cut(s) 495
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
BtuMI TCGCGA 1 cut(s) 446
Cac8I GCNNGC 3 cut(s) 355, 464, 631
CaiI CAGNNNCTG 2 cut(s) 376, 415
CfoI GCGC 6 cut(s) 108, 133, 355, 357, 415, 524
Cfr13I GGNCC 3 cut(s) 153, 603, 604
CseI GACGC 3 cut(s) 232, 445, 606
Csp6I GTAC 2 cut(s) 260, 272
CviAII CATG 1 cut(s) 634
CviJI RGCY 6 cut(s) 144, 160, 373, 390, 565, 605
CviKI_1 RGCY 6 cut(s) 144, 160, 373, 390, 565, 605
CviQI GTAC 2 cut(s) 260, 272
DdeI CTNAG 1 cut(s) 537
DpnI GATC 9 cut(s) 20, 218, 341, 361, 383, 449, 506, 534, 543
DpnII GATC 9 cut(s) 18, 216, 339, 359, 381, 447, 504, 532, 541
EaeI YGGCCR 1 cut(s) 388
EciI GGCGGA 2 cut(s) 80, 103
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 2 cut(s) 162, 607
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 160
Eco72I CACGTG 1 cut(s) 644
Eco81I CCTNAGG 1 cut(s) 537
EcoICRI GAGCTC 1 cut(s) 160
EcoO109I RGGNCCY 2 cut(s) 603, 604
EcoRII CCWGG 3 cut(s) 149, 408, 549
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 2 cut(s) 162, 607
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 1 cut(s) 637
FaiI YATR 1 cut(s) 635
FaqI GGGAC 1 cut(s) 16
FatI CATG 1 cut(s) 633
FauI CCCGC 2 cut(s) 478, 616
Fnu4HI GCNGC 9 cut(s) 145, 207, 231, 371, 374, 391, 473, 476, 563
FokI GGATG 1 cut(s) 502
FriOI GRGCYC 2 cut(s) 162, 607
Fsp4HI GCNGC 9 cut(s) 145, 207, 231, 371, 374, 391, 473, 476, 563
FspBI CTAG 1 cut(s) 649
GlaI GCGC 6 cut(s) 107, 132, 354, 356, 414, 523
GluI GCNGC 9 cut(s) 145, 207, 231, 371, 374, 391, 473, 476, 563
HaeII RGCGCY 1 cut(s) 416
HaeIII GGCC 2 cut(s) 390, 605
HapII CCGG 3 cut(s) 66, 214, 330
HgaI GACGC 3 cut(s) 232, 445, 606
HhaI GCGC 6 cut(s) 108, 133, 355, 357, 415, 524
Hin1II CATG 1 cut(s) 637
Hin6I GCGC 6 cut(s) 106, 131, 353, 355, 413, 522
HinP1I GCGC 6 cut(s) 106, 131, 353, 355, 413, 522
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 1 cut(s) 84
HpaII CCGG 3 cut(s) 66, 214, 330
HphI GGTGA 6 cut(s) 38, 190, 304, 313, 391, 466
Hpy166II GTNNAC 2 cut(s) 247, 517
Hpy188I TCNGA 5 cut(s) 83, 367, 422, 530, 596
Hpy188III TCNNGA 2 cut(s) 445, 536
Hpy8I GTNNAC 2 cut(s) 247, 517
Hpy99I CGWCG 3 cut(s) 367, 439, 622
HpyAV CCTTC 4 cut(s) 21, 106, 310, 618
HpyCH4III ACNGT 2 cut(s) 39, 63
HpyCH4IV ACGT 2 cut(s) 395, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 472
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 2 cut(s) 395, 643
Hsp92II CATG 1 cut(s) 637
HspAI GCGC 6 cut(s) 106, 131, 353, 355, 413, 522
Kzo9I GATC 9 cut(s) 18, 216, 339, 359, 381, 447, 504, 532, 541
LmnI GCTCC 2 cut(s) 332, 367
Lsp1109I GCAGC 4 cut(s) 382, 459, 462, 574
LweI GCATC 3 cut(s) 117, 193, 588
MaeI CTAG 1 cut(s) 649
MaeII ACGT 2 cut(s) 395, 643
MaeIII GTNAC 2 cut(s) 454, 639
MalI GATC 9 cut(s) 20, 218, 341, 361, 383, 449, 506, 534, 543
MboI GATC 9 cut(s) 18, 216, 339, 359, 381, 447, 504, 532, 541
MboII GAAGA 1 cut(s) 334
MflI RGATCY 4 cut(s) 216, 339, 532, 541
MhlI GDGCHC 2 cut(s) 162, 607
MmeI TCCRAC 3 cut(s) 162, 345, 426
MspA1I CMGCKG 1 cut(s) 376
MspI CCGG 3 cut(s) 66, 214, 330
MspR9I CCNGG 4 cut(s) 151, 214, 410, 551
Mva1269I GAATGC 1 cut(s) 524
MvaI CCWGG 3 cut(s) 151, 410, 551
MvnI CGCG 6 cut(s) 106, 131, 243, 353, 355, 446
MwoI GCNNNNNNNGC 1 cut(s) 472
NciI CCSGG 1 cut(s) 214
NdeII GATC 9 cut(s) 18, 216, 339, 359, 381, 447, 504, 532, 541
NlaIII CATG 1 cut(s) 637
NlaIV GGNNCC 6 cut(s) 70, 218, 604, 605, 606, 628
NmuCI GTSAC 2 cut(s) 454, 639
NruI TCGCGA 1 cut(s) 446
PauI GCGCGC 1 cut(s) 353
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 426, 443
PctI GAATGC 1 cut(s) 524
PfeI GAWTC 1 cut(s) 84
PfoI TCCNGGA 2 cut(s) 212, 549
PkrI GCNGC 9 cut(s) 146, 208, 232, 372, 375, 392, 474, 477, 564
Ple19I CGATCG 1 cut(s) 362
PmaCI CACGTG 1 cut(s) 644
PmlI CACGTG 1 cut(s) 644
Ppu21I YACGTR 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 3 cut(s) 149, 408, 549
PspCI CACGTG 1 cut(s) 644
PspGI CCWGG 3 cut(s) 149, 408, 549
PspN4I GGNNCC 6 cut(s) 70, 218, 604, 605, 606, 628
PspOMI GGGCCC 1 cut(s) 603
PspPI GGNCC 3 cut(s) 153, 603, 604
PsrI GAACNNNNNNTAC 2 cut(s) 218, 250
PstNI CAGNNNCTG 2 cut(s) 376, 415
PsuI RGATCY 4 cut(s) 216, 339, 532, 541
PteI GCGCGC 1 cut(s) 353
PvuI CGATCG 1 cut(s) 362
RruI TCGCGA 1 cut(s) 446
RsaI GTAC 2 cut(s) 261, 273
RsaNI GTAC 2 cut(s) 260, 272
SacI GAGCTC 1 cut(s) 162
SatI GCNGC 9 cut(s) 145, 207, 231, 371, 374, 391, 473, 476, 563
Sau3AI GATC 9 cut(s) 18, 216, 339, 359, 381, 447, 504, 532, 541
Sau96I GGNCC 3 cut(s) 153, 603, 604
ScrFI CCNGG 4 cut(s) 151, 214, 410, 551
SduI GDGCHC 2 cut(s) 162, 607
SetI ASST 6 cut(s) 162, 194, 255, 398, 601, 646
SfaNI GCATC 3 cut(s) 117, 193, 588
SinI GGWCC 1 cut(s) 153
SspMI CTAG 1 cut(s) 649
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 4 cut(s) 149, 212, 408, 549
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 2 cut(s) 39, 63
TaiI ACGT 2 cut(s) 398, 646
TaqI TCGA 2 cut(s) 165, 587
TaqII GACCGA 1 cut(s) 170
TauI GCSGC 5 cut(s) 147, 209, 233, 376, 393
TfiI GAWTC 1 cut(s) 84
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 454, 639
TseI GCWGC 4 cut(s) 370, 472, 475, 562
Tsp45I GTSAC 2 cut(s) 454, 639
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 153
XspI CTAG 1 cut(s) 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.