Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005745.1

Orthogroup ID

OG0018013

Physical Location & Seq

Genomic Coordinates Reverse (-)

142556 .. 143194

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005745.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgtcctcgtcttcctcgatcccaatgtcctcctcctcctcttcgcaacagtccacacagccaccctcatttccgctgccgccgttccgatccatcctcacgcgcctctcccgcttctcccgcaacgcgctcgtcaaccaacgcccctggaccgagctcgtcgaccgcaccgccttcacccgaccgtcctccttctccgacgcggcctcgcgcgtgaggaaaaacgccgcctacttccgcgtcaactacctgatcgtgctcgccgtcgtcctcgcctactcgctcctctcccaccccttcactctcctcaccctcgtcgtcctcgccgccgcgtggatcttcctctactcgcaccgacagtcggatcagccgctcgtgatcttgggccggacttactcggacacgcaggtgctgtttgggctgggcctggcgacgctgatcgcgatcttgatgacgagcgtgctgtcgctgctcataacggcgctgatggtgggggtcgggatcgtctgtgctcacggcgcgtttagggatcctgaggatctgttcttggatgaatcgcagccgttgggttctggattcgcttcgatgttcagtggggccgcttcctctgctggcgccagcatggtgtcacgtgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PRA1

Protein Analysis

212

Amino Acids

22.89

Weight (kDa)

9.99

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018013)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g39780
malus_domestica	MD03G1056700.v1.1 MD11G1058500.v1.1
prunus_persica	Prupe.6G048100_v2.0.a1
pyrus_communis	pycom03g04510
rosa_chinensis	RchiOBHm_Chr5g0071661
rosa_multiflora	Rmu_sc0005745.1_g000036
rosa_roxburghii	Rroxscaffold_1G00009510
rosa_rugosa	Rorug05G0414100
rosa_samantha	Rh5BG489600
rosa_wichuraiana	Rw5G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	397
Acc36I	ACCTGC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	614
AccBSI	CCGCTC	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	9 cut(s)	103, 128, 203, 211, 213, 240, 332, 443, 521
AclWI	GGATC	8 cut(s)	13, 84, 344, 372, 509, 524, 537, 546
AcvI	CACGTG	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	615
AfiI	CCNNNNNNNGG	2 cut(s)	333, 361
AflIII	ACRYGT	1 cut(s)	631
AjnI	CCWGG	2 cut(s)	146, 426
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw21I	GWGCWC	3 cut(s)	159, 261, 514
AlwI	GGATC	8 cut(s)	13, 84, 344, 372, 509, 524, 537, 546
AlwNI	CAGNNNCTG	1 cut(s)	412
AoxI	GGCC	4 cut(s)	204, 385, 424, 597
ApeKI	GCWGC	3 cut(s)	76, 469, 559
AspLEI	GCGC	6 cut(s)	105, 130, 213, 484, 521, 617
AspS9I	GGNCC	4 cut(s)	150, 385, 424, 597
AsuHPI	GGTGA	2 cut(s)	169, 301
AvaII	GGWCC	1 cut(s)	150
AxyI	CCTNAGG	1 cut(s)	534
BamHI	GGATCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	614
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	374
BbrPI	CACGTG	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	3
Bbv12I	GWGCWC	3 cut(s)	159, 261, 514
BbvI	GCAGC	3 cut(s)	63, 456, 571
BccI	CCATC	2 cut(s)	101, 481
BceAI	ACGGC	5 cut(s)	67, 248, 495, 532, 547
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciT130I	CCWGG	2 cut(s)	148, 428
BfaI	CTAG	1 cut(s)	637
BfoI	RGCGCY	2 cut(s)	485, 618
BfuAI	ACCTGC	1 cut(s)	397
Bme1390I	CCNGG	2 cut(s)	148, 428
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	4 cut(s)	150, 385, 424, 597
BmiI	GGNNCC	3 cut(s)	531, 598, 616
BmrFI	CCNGG	2 cut(s)	148, 428
BpiI	GAAGAC	1 cut(s)	3
BsaAI	YACGTR	1 cut(s)	632
BsaBI	GATNNNNATC	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	615
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	2 cut(s)	333, 361
Bse21I	CCTNAGG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	148, 428
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	2 cut(s)	93, 556
BseJI	GATNNNNATC	1 cut(s)	443
BseLI	CCNNNNNNNGG	2 cut(s)	333, 361
BseMII	CTCAG	1 cut(s)	525
BseRI	GAGGAG	5 cut(s)	22, 25, 28, 275, 296
BseXI	GCAGC	3 cut(s)	63, 456, 571
BseYI	CCCAGC	1 cut(s)	421
Bsh1236I	CGCG	9 cut(s)	103, 128, 203, 211, 213, 240, 332, 443, 521
Bsh1285I	CGRYCG	2 cut(s)	166, 185
BshFI	GGCC	4 cut(s)	206, 387, 426, 599
BshNI	GGYRCC	1 cut(s)	614
BsiEI	CGRYCG	2 cut(s)	166, 185
BsiHKAI	GWGCWC	3 cut(s)	159, 261, 514
BsiSI	CCGG	1 cut(s)	388
BslI	CCNNNNNNNGG	2 cut(s)	333, 361
BsnI	GGCC	4 cut(s)	206, 387, 426, 599
Bsp1286I	GDGCHC	3 cut(s)	159, 261, 514
Bsp68I	TCGCGA	1 cut(s)	443
BspANI	GGCC	4 cut(s)	206, 387, 426, 599
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	9 cut(s)	103, 128, 203, 211, 213, 240, 332, 443, 521
BspLI	GGNNCC	3 cut(s)	531, 598, 616
BspMI	ACCTGC	1 cut(s)	397
BspPI	GGATC	8 cut(s)	13, 84, 344, 372, 509, 524, 537, 546
BspT107I	GGYRCC	1 cut(s)	614
BsrBI	CCGCTC	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	146
BssNI	GRCGYC	1 cut(s)	615
BssSI	CACGAG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	374
Bst2UI	CCWGG	2 cut(s)	148, 428
Bst4CI	ACNGT	3 cut(s)	51, 186, 360
Bst6I	CTCTTC	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	615
BstBAI	YACGTR	1 cut(s)	632
BstC8I	GCNNGC	4 cut(s)	261, 461, 613, 619
BstDEI	CTNAG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	93, 556
BstFNI	CGCG	9 cut(s)	103, 128, 203, 211, 213, 240, 332, 443, 521
BstH2I	RGCGCY	2 cut(s)	485, 618
BstHHI	GCGC	6 cut(s)	105, 130, 213, 484, 521, 617
BstMCI	CGRYCG	2 cut(s)	166, 185
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 120, 418, 469, 518, 608
BstNI	CCWGG	2 cut(s)	148, 428
BstSCI	CCNGG	2 cut(s)	146, 426
BstUI	CGCG	9 cut(s)	103, 128, 203, 211, 213, 240, 332, 443, 521
BstV1I	GCAGC	3 cut(s)	63, 456, 571
BstV2I	GAAGAC	1 cut(s)	3
BstX2I	RGATCY	3 cut(s)	336, 529, 538
BstYI	RGATCY	3 cut(s)	336, 529, 538
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	4 cut(s)	206, 387, 426, 599
BtsCI	GGATG	2 cut(s)	93, 556
BtsIMutI	CAGTG	1 cut(s)	598
BtuMI	TCGCGA	1 cut(s)	443
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	4 cut(s)	261, 461, 613, 619
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	6 cut(s)	105, 130, 213, 484, 521, 617
Cfr13I	GGNCC	4 cut(s)	150, 385, 424, 597
CseI	GACGC	3 cut(s)	209, 229, 442
CviAII	CATG	1 cut(s)	622
CviJI	RGCY	9 cut(s)	61, 157, 206, 370, 387, 421, 426, 562, 599
CviKI_1	RGCY	9 cut(s)	61, 157, 206, 370, 387, 421, 426, 562, 599
DdeI	CTNAG	1 cut(s)	534
DinI	GGCGCC	1 cut(s)	616
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Ecl136II	GAGCTC	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	157
Eco72I	CACGTG	1 cut(s)	632
Eco81I	CCTNAGG	1 cut(s)	534
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	2 cut(s)	146, 426
EcoT38I	GRGCYC	1 cut(s)	159
EgeI	GGCGCC	1 cut(s)	616
EheI	GGCGCC	1 cut(s)	616
FaeI	CATG	1 cut(s)	625
FaiI	YATR	2 cut(s)	476, 623
FatI	CATG	1 cut(s)	621
FauI	CCCGC	2 cut(s)	119, 128
FblI	GTMKAC	1 cut(s)	162
FokI	GGATG	2 cut(s)	80, 563
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	637
GlaI	GCGC	6 cut(s)	104, 129, 212, 483, 520, 616
GsaI	CCCAGC	1 cut(s)	425
HaeII	RGCGCY	2 cut(s)	485, 618
HaeIII	GGCC	4 cut(s)	206, 387, 426, 599
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	3 cut(s)	209, 229, 442
HhaI	GCGC	6 cut(s)	105, 130, 213, 484, 521, 617
Hin1I	GRCGYC	1 cut(s)	615
Hin1II	CATG	1 cut(s)	625
Hin6I	GCGC	6 cut(s)	103, 128, 211, 482, 519, 615
HinP1I	GCGC	6 cut(s)	103, 128, 211, 482, 519, 615
HincII	GTYRAC	3 cut(s)	136, 163, 244
HindII	GTYRAC	3 cut(s)	136, 163, 244
HinfI	GANTC	2 cut(s)	554, 576
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	2 cut(s)	169, 301
Hpy166II	GTNNAC	4 cut(s)	54, 136, 163, 244
Hpy188I	TCNGA	4 cut(s)	89, 199, 364, 400
Hpy188III	TCNNGA	6 cut(s)	376, 442, 448, 499, 533, 573
Hpy8I	GTNNAC	4 cut(s)	54, 136, 163, 244
Hpy99I	CGWCG	5 cut(s)	164, 203, 269, 320, 436
HpyAV	CCTTC	3 cut(s)	184, 202, 307
HpyCH4III	ACNGT	3 cut(s)	51, 186, 360
HpyCH4IV	ACGT	1 cut(s)	631
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 120, 418, 469, 518, 608
HpyF3I	CTNAG	1 cut(s)	534
HpySE526I	ACGT	1 cut(s)	631
Hsp92I	GRCGYC	1 cut(s)	615
Hsp92II	CATG	1 cut(s)	625
HspAI	GCGC	6 cut(s)	103, 128, 211, 482, 519, 615
KasI	GGCGCC	1 cut(s)	614
LmnI	GCTCC	1 cut(s)	288
Lsp1109I	GCAGC	3 cut(s)	63, 456, 571
MaeI	CTAG	1 cut(s)	637
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	1 cut(s)	627
MbiI	CCGCTC	1 cut(s)	373
MboII	GAAGA	3 cut(s)	3, 33, 331
MflI	RGATCY	3 cut(s)	336, 529, 538
MhlI	GDGCHC	3 cut(s)	159, 261, 514
Mly113I	GGCGCC	1 cut(s)	615
MmeI	TCCRAC	2 cut(s)	222, 342
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	2 cut(s)	148, 428
MvaI	CCWGG	2 cut(s)	148, 428
MvnI	CGCG	9 cut(s)	103, 128, 203, 211, 213, 240, 332, 443, 521
MwoI	GCNNNNNNNGC	6 cut(s)	111, 120, 418, 469, 518, 608
NarI	GGCGCC	1 cut(s)	615
NlaIII	CATG	1 cut(s)	625
NlaIV	GGNNCC	3 cut(s)	531, 598, 616
NmuCI	GTSAC	1 cut(s)	627
NruI	TCGCGA	1 cut(s)	443
OliI	CACNNNNGTG	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	3 cut(s)	14, 261, 440
PfeI	GAWTC	2 cut(s)	554, 576
PluTI	GGCGCC	1 cut(s)	618
PmaCI	CACGTG	1 cut(s)	632
PmlI	CACGTG	1 cut(s)	632
Ppu21I	YACGTR	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	146, 426
PspCI	CACGTG	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	2 cut(s)	146, 426
PspN4I	GGNNCC	3 cut(s)	531, 598, 616
PspPI	GGNCC	4 cut(s)	150, 385, 424, 597
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	3 cut(s)	336, 529, 538
RruI	TCGCGA	1 cut(s)	443
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	159
SalI	GTCGAC	1 cut(s)	161
Sau96I	GGNCC	4 cut(s)	150, 385, 424, 597
ScrFI	CCNGG	2 cut(s)	148, 428
SduI	GDGCHC	3 cut(s)	159, 261, 514
SetI	ASST	4 cut(s)	159, 252, 411, 634
SfoI	GGCGCC	1 cut(s)	616
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	407
SspDI	GGCGCC	1 cut(s)	614
SspMI	CTAG	1 cut(s)	637
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	146, 426
TaaI	ACNGT	3 cut(s)	51, 186, 360
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	3 cut(s)	17, 162, 584
TaqII	GACCGA	1 cut(s)	167
TauI	GCSGC	7 cut(s)	82, 206, 230, 329, 332, 373, 602
TfiI	GAWTC	2 cut(s)	554, 576
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	627
TseI	GCWGC	3 cut(s)	76, 469, 559
Tsp45I	GTSAC	1 cut(s)	627
TspDTI	ATGAA	1 cut(s)	567
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.