MD11G1058500.v1.1

May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0018013
Physical Location & Seq
Reverse (-)
4983827 .. 4984141
315 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1058500.v1.1.491

Sequence Viewer

Length: 315 bp
ATGTCATCGCCTTCCCTGATCCCAGTTTCGACCCAACAGTCTTCCCTCCAGCAATCCCAACGGTCTGGCACCAATCTACTCTTATTCCTCCGACCCTTCCTCACGCGCATCTCCGCGCTCTATCGCCACGCTCTCTCCAACAGCCGCCCTTGGACCGAGCTCATCGACCGCACTGCCTTCACCAGGCCGACCTCGCTCACCAATGCCGCCTACTTTAGCGTCAACTACCTCATCGTACTCGCGGTCGTACTCGCCTACTCCCTCATCTCCAACCCCTTCTCTCTTCTCACCCTCGTCTCCCTTACCGGAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PRA1

Protein Analysis

105

Amino Acids

11.48

Weight (kDa)

10.87

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRA1 PF03208 44 - 102 1.1e-11 PRA1 family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018013)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39780
malus_domestica MD03G1056700.v1.1 MD11G1058500.v1.1
prunus_persica Prupe.6G048100_v2.0.a1
pyrus_communis pycom03g04510
rosa_chinensis RchiOBHm_Chr5g0071661
rosa_multiflora Rmu_sc0005745.1_g000036
rosa_roxburghii Rroxscaffold_1G00009510
rosa_rugosa Rorug05G0414100
rosa_samantha Rh5BG489600
rosa_wichuraiana Rw5G043670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 68
AccII CGCG 3 cut(s) 106, 116, 242
AciI CCGC 5 cut(s) 114, 145, 169, 207, 242
AclWI GGATC 1 cut(s) 13
AfaI GTAC 2 cut(s) 237, 249
AfiI CCNNNNNNNGG 1 cut(s) 183
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 185
AspLEI GCGC 2 cut(s) 108, 118
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 3 cut(s) 172, 190, 280
AvaII GGWCC 1 cut(s) 153
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 1 cut(s) 162
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 301
BisI GCNGC 2 cut(s) 145, 207
BlsI GCNGC 2 cut(s) 146, 208
Bme1390I CCNGG 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 184
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 23
Bsh1236I CGCG 3 cut(s) 106, 116, 242
Bsh1285I CGRYCG 2 cut(s) 169, 246
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 68
BsiEI CGRYCG 2 cut(s) 169, 246
BsiHKAI GWGCWC 1 cut(s) 162
BsiSI CCGG 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 301
BsmBI CGTCTC 1 cut(s) 301
BsnI GGCC 1 cut(s) 187
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 18
BspACI CCGC 5 cut(s) 114, 145, 169, 207, 242
BspANI GGCC 1 cut(s) 187
BspFNI CGCG 3 cut(s) 106, 116, 242
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 68
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 39, 63
Bst6I CTCTTC 1 cut(s) 288
BstENI CCTNNNNNAGG 1 cut(s) 181
BstFNI CGCG 3 cut(s) 106, 116, 242
BstHHI GCGC 2 cut(s) 108, 118
BstKTI GATC 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 1 cut(s) 18
BstMCI CGRYCG 2 cut(s) 169, 246
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 182
BstUI CGCG 3 cut(s) 106, 116, 242
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 65
BsuRI GGCC 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
CfoI GCGC 2 cut(s) 108, 118
Cfr13I GGNCC 1 cut(s) 153
CseI GACGC 1 cut(s) 208
Csp6I GTAC 2 cut(s) 236, 248
CviJI RGCY 3 cut(s) 144, 160, 187
CviKI_1 RGCY 3 cut(s) 144, 160, 187
CviQI GTAC 2 cut(s) 236, 248
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 301
Fnu4HI GCNGC 2 cut(s) 145, 207
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 145, 207
GlaI GCGC 2 cut(s) 107, 117
GluI GCNGC 2 cut(s) 145, 207
GsuI CTGGAG 1 cut(s) 32
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 208
HhaI GCGC 2 cut(s) 108, 118
Hin6I GCGC 2 cut(s) 106, 116
HinP1I GCGC 2 cut(s) 106, 116
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HpaII CCGG 1 cut(s) 306
HphI GGTGA 3 cut(s) 172, 190, 280
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 4 cut(s) 21, 106, 187, 286
HpyCH4III ACNGT 2 cut(s) 39, 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HspAI GCGC 2 cut(s) 106, 116
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 6 cut(s) 29, 36, 51, 62, 169, 196
LweI GCATC 1 cut(s) 117
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MboII GAAGA 2 cut(s) 33, 275
MhlI GDGCHC 1 cut(s) 162
MmeI TCCRAC 3 cut(s) 115, 162, 294
MnlI CCTC 7 cut(s) 56, 98, 110, 202, 239, 272, 302
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 184
MvaI CCWGG 1 cut(s) 184
MvnI CGCG 3 cut(s) 106, 116, 242
MwoI GCNNNNNNNGC 1 cut(s) 193
NdeII GATC 1 cut(s) 18
NlaIV GGNNCC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 146, 208
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 1 cut(s) 153
RsaI GTAC 2 cut(s) 237, 249
RsaNI GTAC 2 cut(s) 236, 248
SacI GAGCTC 1 cut(s) 162
SatI GCNGC 2 cut(s) 145, 207
Sau3AI GATC 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 162
SetI ASST 3 cut(s) 162, 194, 231
SfaNI GCATC 1 cut(s) 117
SinI GGWCC 1 cut(s) 153
SsiI CCGC 5 cut(s) 114, 145, 169, 207, 242
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 182
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 39, 63
TaqI TCGA 2 cut(s) 29, 165
TaqII GACCGA 1 cut(s) 170
TauI GCSGC 2 cut(s) 147, 209
TscAI CASTG 1 cut(s) 178
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 153
XagI CCTNNNNNAGG 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.