May be involved in both secretory and endocytic intracellular trafficking in the endosomal prevacuolar compartments
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g39780 |
| malus_domestica | MD03G1056700.v1.1 MD11G1058500.v1.1 |
| prunus_persica | Prupe.6G048100_v2.0.a1 |
| pyrus_communis | pycom03g04510 |
| rosa_chinensis | RchiOBHm_Chr5g0071661 |
| rosa_multiflora | Rmu_sc0005745.1_g000036 |
| rosa_roxburghii | Rroxscaffold_1G00009510 |
| rosa_rugosa | Rorug05G0414100 |
| rosa_samantha | Rh5BG489600 |
| rosa_wichuraiana | Rw5G043670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 227 |
| AccII | CGCG | 6 cut(s) | 103, 137, 220, 249, 272, 440 |
| AclWI | GGATC | 5 cut(s) | 13, 70, 353, 533, 555 |
| AcoI | YGGCCR | 1 cut(s) | 394 |
| AcvI | CACGTG | 1 cut(s) | 650 |
| AfaI | GTAC | 3 cut(s) | 178, 267, 279 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 219, 426, 620 |
| AflIII | ACRYGT | 1 cut(s) | 649 |
| AgsI | TTSAA | 1 cut(s) | 594 |
| AjnI | CCWGG | 2 cut(s) | 155, 414 |
| AluBI | AGCT | 1 cut(s) | 166 |
| AluI | AGCT | 1 cut(s) | 166 |
| Alw21I | GWGCWC | 1 cut(s) | 168 |
| AlwI | GGATC | 5 cut(s) | 13, 70, 353, 533, 555 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 421 |
| Ama87I | CYCGRG | 1 cut(s) | 542 |
| AoxI | GGCC | 6 cut(s) | 112, 121, 210, 394, 417, 433 |
| ApeKI | GCWGC | 1 cut(s) | 568 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 602, 634 |
| AspLEI | GCGC | 5 cut(s) | 105, 139, 228, 341, 521 |
| AspS9I | GGNCC | 4 cut(s) | 159, 418, 433, 610 |
| AsuC2I | CCSGG | 2 cut(s) | 195, 583 |
| AsuHPI | GGTGA | 3 cut(s) | 58, 310, 505 |
| AvaI | CYCGRG | 1 cut(s) | 542 |
| AvaII | GGWCC | 2 cut(s) | 159, 610 |
| BanII | GRGCYC | 2 cut(s) | 168, 200 |
| BbrPI | CACGTG | 1 cut(s) | 650 |
| Bbv12I | GWGCWC | 1 cut(s) | 168 |
| BbvI | GCAGC | 1 cut(s) | 580 |
| BccI | CCATC | 4 cut(s) | 77, 88, 101, 490 |
| BceAI | ACGGC | 2 cut(s) | 504, 556 |
| BciT130I | CCWGG | 2 cut(s) | 157, 416 |
| BcnI | CCSGG | 2 cut(s) | 195, 583 |
| BfaI | CTAG | 2 cut(s) | 323, 655 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 111, 120 |
| BisI | GCNGC | 5 cut(s) | 151, 213, 237, 397, 569 |
| BlsI | GCNGC | 5 cut(s) | 152, 214, 238, 398, 570 |
| Bme1390I | CCNGG | 4 cut(s) | 157, 195, 416, 583 |
| Bme18I | GGWCC | 2 cut(s) | 159, 610 |
| BmeT110I | CYCGRG | 1 cut(s) | 542 |
| BmgT120I | GGNCC | 4 cut(s) | 159, 418, 433, 610 |
| BmiI | GGNNCC | 2 cut(s) | 611, 612 |
| BmrFI | CCNGG | 4 cut(s) | 157, 195, 416, 583 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 200, 232 |
| BpmI | CTGGAG | 1 cut(s) | 172 |
| BpuMI | CCSGG | 2 cut(s) | 195, 583 |
| BsaAI | YACGTR | 2 cut(s) | 358, 650 |
| BsaBI | GATNNNNATC | 2 cut(s) | 23, 452 |
| BsaJI | CCNNGG | 4 cut(s) | 155, 207, 414, 543 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 125, 155 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 219, 426, 620 |
| Bse1I | ACTGG | 1 cut(s) | 636 |
| Bse8I | GATNNNNATC | 2 cut(s) | 23, 452 |
| BseBI | CCWGG | 2 cut(s) | 157, 416 |
| BseDI | CCNNGG | 4 cut(s) | 155, 207, 414, 543 |
| BseGI | GGATG | 4 cut(s) | 29, 69, 80, 93 |
| BseJI | GATNNNNATC | 2 cut(s) | 23, 452 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 219, 426, 620 |
| BseMII | CTCAG | 1 cut(s) | 348 |
| BseNI | ACTGG | 1 cut(s) | 636 |
| BseRI | GAGGAG | 1 cut(s) | 305 |
| BseX3I | CGGCCG | 1 cut(s) | 394 |
| BseXI | GCAGC | 1 cut(s) | 580 |
| Bsh1236I | CGCG | 6 cut(s) | 103, 137, 220, 249, 272, 440 |
| Bsh1285I | CGRYCG | 4 cut(s) | 175, 276, 368, 397 |
| BshFI | GGCC | 6 cut(s) | 114, 123, 212, 396, 419, 435 |
| BsiEI | CGRYCG | 4 cut(s) | 175, 276, 368, 397 |
| BsiHKAI | GWGCWC | 1 cut(s) | 168 |
| BsiHKCI | CYCGRG | 1 cut(s) | 542 |
| BsiSI | CCGG | 4 cut(s) | 111, 120, 194, 582 |
| BslFI | GGGAC | 1 cut(s) | 623 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 219, 426, 620 |
| BsmFI | GGGAC | 1 cut(s) | 623 |
| BsnI | GGCC | 6 cut(s) | 114, 123, 212, 396, 419, 435 |
| BsoBI | CYCGRG | 1 cut(s) | 542 |
| Bsp1286I | GDGCHC | 2 cut(s) | 168, 200 |
| Bsp68I | TCGCGA | 1 cut(s) | 440 |
| BspANI | GGCC | 6 cut(s) | 114, 123, 212, 396, 419, 435 |
| BspCNI | CTCAG | 1 cut(s) | 347 |
| BspFNI | CGCG | 6 cut(s) | 103, 137, 220, 249, 272, 440 |
| BspLI | GGNNCC | 2 cut(s) | 611, 612 |
| BspPI | GGATC | 5 cut(s) | 13, 70, 353, 533, 555 |
| BsrI | ACTGG | 1 cut(s) | 636 |
| BssECI | CCNNGG | 4 cut(s) | 155, 207, 414, 543 |
| Bst2UI | CCWGG | 2 cut(s) | 157, 416 |
| Bst4CI | ACNGT | 3 cut(s) | 176, 369, 527 |
| BstBAI | YACGTR | 2 cut(s) | 358, 650 |
| BstC8I | GCNNGC | 1 cut(s) | 200 |
| BstDEI | CTNAG | 1 cut(s) | 334 |
| BstF5I | GGATG | 4 cut(s) | 29, 69, 80, 93 |
| BstFNI | CGCG | 6 cut(s) | 103, 137, 220, 249, 272, 440 |
| BstHHI | GCGC | 5 cut(s) | 105, 139, 228, 341, 521 |
| BstMCI | CGRYCG | 4 cut(s) | 175, 276, 368, 397 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 111, 120, 129, 527 |
| BstNI | CCWGG | 2 cut(s) | 157, 416 |
| BstSCI | CCNGG | 4 cut(s) | 155, 193, 414, 581 |
| BstUI | CGCG | 6 cut(s) | 103, 137, 220, 249, 272, 440 |
| BstV1I | GCAGC | 1 cut(s) | 580 |
| BstX2I | RGATCY | 3 cut(s) | 345, 538, 547 |
| BstYI | RGATCY | 3 cut(s) | 345, 538, 547 |
| BstZI | CGGCCG | 1 cut(s) | 394 |
| BsuRI | GGCC | 6 cut(s) | 114, 123, 212, 396, 419, 435 |
| BtsCI | GGATG | 4 cut(s) | 29, 69, 80, 93 |
| BtsIMutI | CAGTG | 1 cut(s) | 643 |
| BtuMI | TCGCGA | 1 cut(s) | 440 |
| Cac8I | GCNNGC | 1 cut(s) | 200 |
| CaiI | CAGNNNCTG | 1 cut(s) | 421 |
| CfoI | GCGC | 5 cut(s) | 105, 139, 228, 341, 521 |
| Cfr13I | GGNCC | 4 cut(s) | 159, 418, 433, 610 |
| CseI | GACGC | 2 cut(s) | 238, 451 |
| Csp6I | GTAC | 3 cut(s) | 177, 266, 278 |
| CviAII | CATG | 1 cut(s) | 342 |
| CviQI | GTAC | 3 cut(s) | 177, 266, 278 |
| DdeI | CTNAG | 1 cut(s) | 334 |
| EaeI | YGGCCR | 1 cut(s) | 394 |
| EagI | CGGCCG | 1 cut(s) | 394 |
| Ecl136II | GAGCTC | 1 cut(s) | 166 |
| EclXI | CGGCCG | 1 cut(s) | 394 |
| Eco24I | GRGCYC | 2 cut(s) | 168, 200 |
| Eco47I | GGWCC | 2 cut(s) | 159, 610 |
| Eco52I | CGGCCG | 1 cut(s) | 394 |
| Eco53kI | GAGCTC | 1 cut(s) | 166 |
| Eco72I | CACGTG | 1 cut(s) | 650 |
| Eco88I | CYCGRG | 1 cut(s) | 542 |
| EcoICRI | GAGCTC | 1 cut(s) | 166 |
| EcoO109I | RGGNCCY | 2 cut(s) | 418, 610 |
| EcoRII | CCWGG | 2 cut(s) | 155, 414 |
| EcoT38I | GRGCYC | 2 cut(s) | 168, 200 |
| FaeI | CATG | 1 cut(s) | 345 |
| FaiI | YATR | 1 cut(s) | 343 |
| FaqI | GGGAC | 1 cut(s) | 623 |
| FatI | CATG | 1 cut(s) | 341 |
| FauI | CCCGC | 2 cut(s) | 137, 213 |
| Fnu4HI | GCNGC | 5 cut(s) | 151, 213, 237, 397, 569 |
| FokI | GGATG | 4 cut(s) | 16, 56, 67, 80 |
| FriOI | GRGCYC | 2 cut(s) | 168, 200 |
| Fsp4HI | GCNGC | 5 cut(s) | 151, 213, 237, 397, 569 |
| FspBI | CTAG | 2 cut(s) | 323, 655 |
| FspI | TGCGCA | 1 cut(s) | 227 |
| GlaI | GCGC | 5 cut(s) | 104, 138, 227, 340, 520 |
| GluI | GCNGC | 5 cut(s) | 151, 213, 237, 397, 569 |
| GsuI | CTGGAG | 1 cut(s) | 172 |
| HaeIII | GGCC | 6 cut(s) | 114, 123, 212, 396, 419, 435 |
| HapII | CCGG | 4 cut(s) | 111, 120, 194, 582 |
| HgaI | GACGC | 2 cut(s) | 238, 451 |
| HhaI | GCGC | 5 cut(s) | 105, 139, 228, 341, 521 |
| Hin1II | CATG | 1 cut(s) | 345 |
| Hin6I | GCGC | 5 cut(s) | 103, 137, 226, 339, 519 |
| HinP1I | GCGC | 5 cut(s) | 103, 137, 226, 339, 519 |
| HincII | GTYRAC | 1 cut(s) | 253 |
| HindII | GTYRAC | 1 cut(s) | 253 |
| HpaII | CCGG | 4 cut(s) | 111, 120, 194, 582 |
| HphI | GGTGA | 3 cut(s) | 58, 310, 505 |
| Hpy166II | GTNNAC | 2 cut(s) | 253, 588 |
| Hpy188I | TCNGA | 5 cut(s) | 89, 208, 373, 409, 486 |
| Hpy188III | TCNNGA | 4 cut(s) | 73, 189, 439, 542 |
| Hpy8I | GTNNAC | 2 cut(s) | 253, 588 |
| Hpy99I | CGWCG | 2 cut(s) | 445, 563 |
| HpyAV | CCTTC | 4 cut(s) | 73, 193, 316, 624 |
| HpyCH4III | ACNGT | 3 cut(s) | 176, 369, 527 |
| HpyCH4IV | ACGT | 3 cut(s) | 357, 401, 649 |
| HpyCH4V | TGCA | 1 cut(s) | 530 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 111, 120, 129, 527 |
| HpyF3I | CTNAG | 1 cut(s) | 334 |
| HpySE526I | ACGT | 3 cut(s) | 357, 401, 649 |
| Hsp92II | CATG | 1 cut(s) | 345 |
| HspAI | GCGC | 5 cut(s) | 103, 137, 226, 339, 519 |
| KflI | GGGWCCC | 1 cut(s) | 610 |
| Lsp1109I | GCAGC | 1 cut(s) | 580 |
| MaeI | CTAG | 2 cut(s) | 323, 655 |
| MaeII | ACGT | 3 cut(s) | 357, 401, 649 |
| MaeIII | GTNAC | 3 cut(s) | 325, 460, 645 |
| MboII | GAAGA | 2 cut(s) | 340, 382 |
| MflI | RGATCY | 3 cut(s) | 345, 538, 547 |
| MhlI | GDGCHC | 2 cut(s) | 168, 200 |
| MmeI | TCCRAC | 2 cut(s) | 112, 168 |
| MspI | CCGG | 4 cut(s) | 111, 120, 194, 582 |
| MspR9I | CCNGG | 4 cut(s) | 157, 195, 416, 583 |
| MvaI | CCWGG | 2 cut(s) | 157, 416 |
| MvnI | CGCG | 6 cut(s) | 103, 137, 220, 249, 272, 440 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 111, 120, 129, 527 |
| NciI | CCSGG | 2 cut(s) | 195, 583 |
| NlaIII | CATG | 1 cut(s) | 345 |
| NlaIV | GGNNCC | 2 cut(s) | 611, 612 |
| NmuCI | GTSAC | 1 cut(s) | 645 |
| NruI | TCGCGA | 1 cut(s) | 440 |
| NsbI | TGCGCA | 1 cut(s) | 227 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 14 |
| PkrI | GCNGC | 5 cut(s) | 152, 214, 238, 398, 570 |
| PmaCI | CACGTG | 1 cut(s) | 650 |
| PmlI | CACGTG | 1 cut(s) | 650 |
| Ppu21I | YACGTR | 2 cut(s) | 358, 650 |
| PpuMI | RGGWCCY | 1 cut(s) | 610 |
| Psp124BI | GAGCTC | 1 cut(s) | 168 |
| Psp5II | RGGWCCY | 1 cut(s) | 610 |
| Psp6I | CCWGG | 2 cut(s) | 155, 414 |
| PspCI | CACGTG | 1 cut(s) | 650 |
| PspGI | CCWGG | 2 cut(s) | 155, 414 |
| PspN4I | GGNNCC | 2 cut(s) | 611, 612 |
| PspPI | GGNCC | 4 cut(s) | 159, 418, 433, 610 |
| PspPPI | RGGWCCY | 1 cut(s) | 610 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 224, 256 |
| PstNI | CAGNNNCTG | 1 cut(s) | 421 |
| PsuI | RGATCY | 3 cut(s) | 345, 538, 547 |
| RruI | TCGCGA | 1 cut(s) | 440 |
| RsaI | GTAC | 3 cut(s) | 178, 267, 279 |
| RsaNI | GTAC | 3 cut(s) | 177, 266, 278 |
| SacI | GAGCTC | 1 cut(s) | 168 |
| SatI | GCNGC | 5 cut(s) | 151, 213, 237, 397, 569 |
| Sau96I | GGNCC | 4 cut(s) | 159, 418, 433, 610 |
| ScrFI | CCNGG | 4 cut(s) | 157, 195, 416, 583 |
| SduI | GDGCHC | 2 cut(s) | 168, 200 |
| SetI | ASST | 5 cut(s) | 168, 261, 360, 404, 652 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 120 |
| SinI | GGWCC | 2 cut(s) | 159, 610 |
| SspI | AATATT | 1 cut(s) | 597 |
| SspMI | CTAG | 2 cut(s) | 323, 655 |
| SstI | GAGCTC | 1 cut(s) | 168 |
| StyD4I | CCNGG | 4 cut(s) | 155, 193, 414, 581 |
| TaaI | ACNGT | 3 cut(s) | 176, 369, 527 |
| TaiI | ACGT | 3 cut(s) | 360, 404, 652 |
| TaqI | TCGA | 3 cut(s) | 171, 364, 558 |
| TaqII | GACCGA | 1 cut(s) | 176 |
| TauI | GCSGC | 4 cut(s) | 153, 215, 239, 399 |
| TscAI | CASTG | 1 cut(s) | 643 |
| TseFI | GTSAC | 1 cut(s) | 645 |
| TseI | GCWGC | 1 cut(s) | 568 |
| Tsp45I | GTSAC | 1 cut(s) | 645 |
| TspRI | CASTG | 1 cut(s) | 643 |
| VpaK11BI | GGWCC | 2 cut(s) | 159, 610 |
| XspI | CTAG | 2 cut(s) | 323, 655 |