FvH4_3g39910

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017635
Physical Location & Seq
Forward (+)
33804165 .. 33804851
687 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39910.t1

Sequence Viewer

Length: 510 bp
ATGGGGATCCGCCATTTTGACGAAACCCTACCGGAAAACTCCGGTAGTACTCTCCGTGAGTTAATGATGGCGGAACATCCCCCATCCCACCACAGAAAAATTGTCAAGACGCTCTACAAAGCCCTAGCACACAGAGACACCAGAACCACAGCAAAGCTAGTGGCTCCGGATCTCGAGTGGTGGTTCCACGGACCGCCGCAGTGCCAGCACATGATGAGAATGCTAACCGGGGAGTCGAGGCAGTTGAAGTTCAAGTTCCGGCCGCGCAGCCTCAAGGCGGTCGGGGACCGTGTGGTGGCGGAGGGATGGGAAGGTAAGAAGGAGTACTGGGTGCAGGTGTGGACTGTTAACAAGGATGGGATGGTGACTCAGTTGCGCGAGTATTTCAATACGTTGGTGACGGTGATGGTTAGGGTTTCGGAGGCCGACGACGAGATGGTGAAGCTGTGGCAGAGTGACTCAAAGGAGCGGTTCCGGCGTTCGTTGCCGGATATTGTGCTAGCTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

170

Amino Acids

19.86

Weight (kDa)

9.44

Isoelectric Point (pI)

25.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 72 - 169 8.7e-27 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39910
prunus_persica Prupe.6G046300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071881
rosa_laevigata RLG00000036259
rosa_multiflora Rmu_sc0002149.1_g000007 Rmu_sc0015603.1_g000001
rosa_roxburghii Rroxscaffold_1G00009280
rosa_rugosa Rorug05G0415300
rosa_samantha Rh5BG491300 Rh5CG515200 Rh5DG502800
rosa_wichuraiana Rw5G043810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 325
Acc36I ACCTGC 1 cut(s) 325
AccBSI CCGCTC 1 cut(s) 469
AccII CGCG 2 cut(s) 265, 378
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 8 cut(s) 10, 71, 194, 197, 263, 278, 299, 469
AclWI GGATC 2 cut(s) 14, 177
AcoI YGGCCR 1 cut(s) 260
AfaI GTAC 2 cut(s) 49, 326
AfiI CCNNNNNNNGG 2 cut(s) 277, 295
AgsI TTSAA 3 cut(s) 247, 253, 388
AluBI AGCT 3 cut(s) 157, 445, 503
AluI AGCT 3 cut(s) 157, 445, 503
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 2 cut(s) 14, 177
Ama87I CYCGRG 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 2 cut(s) 260, 423
ApeKI GCWGC 1 cut(s) 267
AspLEI GCGC 2 cut(s) 267, 378
AspS9I GGNCC 2 cut(s) 191, 286
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 4 cut(s) 376, 409, 415, 451
AsuNHI GCTAGC 1 cut(s) 499
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 2 cut(s) 191, 286
BamHI GGATCC 1 cut(s) 6
BbvI GCAGC 1 cut(s) 279
BccI CCATC 7 cut(s) 61, 91, 300, 350, 355, 400, 430
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 3 cut(s) 125, 158, 500
BfuAI ACCTGC 1 cut(s) 325
BisI GCNGC 3 cut(s) 197, 263, 268
BlsI GCNGC 3 cut(s) 198, 264, 269
BmcAI AGTACT 2 cut(s) 49, 326
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 2 cut(s) 191, 286
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 2 cut(s) 191, 286
BmiI GGNNCC 5 cut(s) 8, 165, 185, 287, 473
BmrFI CCNGG 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 337
BmtI GCTAGC 1 cut(s) 503
BmuI ACTGGG 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 229
BsaJI CCNNGG 2 cut(s) 187, 228
BsaWI WCCGGW 3 cut(s) 31, 41, 166
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 295
Bse1I ACTGG 1 cut(s) 332
BseAI TCCGGA 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 187, 228
BseGI GGATG 5 cut(s) 76, 83, 311, 361, 366
BseLI CCNNNNNNNGG 2 cut(s) 277, 295
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 332
BseX3I CGGCCG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 279
BsgI GTGCAG 1 cut(s) 353
Bsh1236I CGCG 2 cut(s) 265, 378
Bsh1285I CGRYCG 2 cut(s) 263, 282
BshFI GGCC 2 cut(s) 262, 425
BsiEI CGRYCG 2 cut(s) 263, 282
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 7 cut(s) 32, 42, 167, 228, 259, 475, 488
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 277, 295
BsmAI GTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 2 cut(s) 262, 425
BsoBI CYCGRG 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 2 cut(s) 6, 169
BspACI CCGC 8 cut(s) 10, 71, 194, 197, 263, 278, 299, 469
BspANI GGCC 2 cut(s) 262, 425
BspCNI CTCAG 1 cut(s) 382
BspEI TCCGGA 1 cut(s) 166
BspFNI CGCG 2 cut(s) 265, 378
BspLI GGNNCC 5 cut(s) 8, 165, 185, 287, 473
BspMI ACCTGC 1 cut(s) 325
BspOI GCTAGC 1 cut(s) 503
BspPI GGATC 2 cut(s) 14, 177
BsrBI CCGCTC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 187, 228
BssMI GATC 2 cut(s) 6, 169
Bst4CI ACNGT 3 cut(s) 290, 346, 403
BstC8I GCNNGC 2 cut(s) 206, 501
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 1 cut(s) 187
BstF5I GGATG 5 cut(s) 76, 83, 311, 361, 366
BstFNI CGCG 2 cut(s) 265, 378
BstHHI GCGC 2 cut(s) 267, 378
BstKTI GATC 2 cut(s) 9, 172
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 2 cut(s) 6, 169
BstMCI CGRYCG 2 cut(s) 263, 282
BstMWI GCNNNNNNNGC 3 cut(s) 205, 475, 484
BstSCI CCNGG 1 cut(s) 227
BstUI CGCG 2 cut(s) 265, 378
BstV1I GCAGC 1 cut(s) 279
BstX2I RGATCY 2 cut(s) 6, 169
BstYI RGATCY 2 cut(s) 6, 169
BstZI CGGCCG 1 cut(s) 260
BsuRI GGCC 2 cut(s) 262, 425
BtgI CCRYGG 1 cut(s) 187
BtsCI GGATG 5 cut(s) 76, 83, 311, 361, 366
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 206
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 2 cut(s) 206, 501
CfoI GCGC 2 cut(s) 267, 378
Cfr13I GGNCC 2 cut(s) 191, 286
CpoI CGGWCCG 1 cut(s) 191
CseI GACGC 1 cut(s) 118
Csp6I GTAC 2 cut(s) 48, 325
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CspI CGGWCCG 1 cut(s) 191
CviAII CATG 1 cut(s) 211
CviJI RGCY 8 cut(s) 122, 157, 164, 262, 270, 425, 445, 503
CviKI_1 RGCY 8 cut(s) 122, 157, 164, 262, 270, 425, 445, 503
CviQI GTAC 2 cut(s) 48, 325
DdeI CTNAG 1 cut(s) 369
DpnI GATC 2 cut(s) 8, 171
DpnII GATC 2 cut(s) 6, 169
EaeI YGGCCR 1 cut(s) 260
EagI CGGCCG 1 cut(s) 260
EciI GGCGGA 2 cut(s) 86, 314
EclXI CGGCCG 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 191, 286
Eco52I CGGCCG 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 173
FaeI CATG 1 cut(s) 214
FaiI YATR 1 cut(s) 212
FaqI GGGAC 1 cut(s) 299
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 3 cut(s) 197, 263, 268
FokI GGATG 5 cut(s) 63, 70, 318, 368, 373
Fsp4HI GCNGC 3 cut(s) 197, 263, 268
FspBI CTAG 3 cut(s) 125, 158, 500
GlaI GCGC 2 cut(s) 266, 377
GluI GCNGC 3 cut(s) 197, 263, 268
HaeIII GGCC 2 cut(s) 262, 425
HapII CCGG 7 cut(s) 32, 42, 167, 228, 259, 475, 488
HgaI GACGC 1 cut(s) 118
HhaI GCGC 2 cut(s) 267, 378
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 2 cut(s) 265, 376
HinP1I GCGC 2 cut(s) 265, 376
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 3 cut(s) 233, 367, 458
HpaI GTTAAC 1 cut(s) 349
HpaII CCGG 7 cut(s) 32, 42, 167, 228, 259, 475, 488
HphI GGTGA 4 cut(s) 376, 409, 415, 451
Hpy166II GTNNAC 2 cut(s) 342, 349
Hpy188I TCNGA 2 cut(s) 421, 509
Hpy188III TCNNGA 3 cut(s) 106, 167, 173
Hpy8I GTNNAC 2 cut(s) 342, 349
Hpy99I CGWCG 2 cut(s) 431, 434
HpyAV CCTTC 2 cut(s) 305, 313
HpyCH4III ACNGT 3 cut(s) 290, 346, 403
HpyCH4IV ACGT 1 cut(s) 392
HpyCH4V TGCA 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 3 cut(s) 205, 475, 484
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 392
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 2 cut(s) 265, 376
Kpn2I TCCGGA 1 cut(s) 166
KspAI GTTAAC 1 cut(s) 349
Kzo9I GATC 2 cut(s) 6, 169
LmnI GCTCC 2 cut(s) 169, 466
Lsp1109I GCAGC 1 cut(s) 279
MaeI CTAG 3 cut(s) 125, 158, 500
MaeII ACGT 1 cut(s) 392
MaeIII GTNAC 3 cut(s) 364, 397, 455
MalI GATC 2 cut(s) 8, 171
MbiI CCGCTC 1 cut(s) 469
MboI GATC 2 cut(s) 6, 169
MflI RGATCY 2 cut(s) 6, 169
MluCI AATT 1 cut(s) 99
MlyI GAGTC 3 cut(s) 242, 361, 452
MnlI CCTC 4 cut(s) 231, 281, 295, 415
MroI TCCGGA 1 cut(s) 166
MseI TTAA 2 cut(s) 62, 348
MspI CCGG 7 cut(s) 32, 42, 167, 228, 259, 475, 488
MspR9I CCNGG 1 cut(s) 229
Mva1269I GAATGC 1 cut(s) 225
MvnI CGCG 2 cut(s) 265, 378
MwoI GCNNNNNNNGC 3 cut(s) 205, 475, 484
NciI CCSGG 1 cut(s) 229
NdeII GATC 2 cut(s) 6, 169
NheI GCTAGC 1 cut(s) 499
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 5 cut(s) 8, 165, 185, 287, 473
NmuCI GTSAC 3 cut(s) 364, 397, 455
PaeR7I CTCGAG 1 cut(s) 173
PaqCI CACCTGC 1 cut(s) 325
PctI GAATGC 1 cut(s) 225
PkrI GCNGC 3 cut(s) 198, 264, 269
PleI GAGTC 3 cut(s) 241, 361, 452
PpsI GAGTC 3 cut(s) 241, 361, 452
PspN4I GGNNCC 5 cut(s) 8, 165, 185, 287, 473
PspPI GGNCC 2 cut(s) 191, 286
PsuI RGATCY 2 cut(s) 6, 169
RsaI GTAC 2 cut(s) 49, 326
RsaNI GTAC 2 cut(s) 48, 325
Rsr2I CGGWCCG 1 cut(s) 191
RsrII CGGWCCG 1 cut(s) 191
SaqAI TTAA 2 cut(s) 62, 348
SatI GCNGC 3 cut(s) 197, 263, 268
Sau3AI GATC 2 cut(s) 6, 169
Sau96I GGNCC 2 cut(s) 191, 286
ScaI AGTACT 2 cut(s) 49, 326
SchI GAGTC 3 cut(s) 242, 361, 452
ScrFI CCNGG 1 cut(s) 229
SetI ASST 6 cut(s) 159, 316, 339, 395, 447, 505
Sfr274I CTCGAG 1 cut(s) 173
SinI GGWCC 2 cut(s) 191, 286
SlaI CTCGAG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 173, 272
SmoI CTYRAG 2 cut(s) 173, 272
Sse9I AATT 1 cut(s) 99
SsiI CCGC 8 cut(s) 10, 71, 194, 197, 263, 278, 299, 469
SspMI CTAG 3 cut(s) 125, 158, 500
StyD4I CCNGG 1 cut(s) 227
TaaI ACNGT 3 cut(s) 290, 346, 403
TaiI ACGT 1 cut(s) 395
TaqI TCGA 2 cut(s) 174, 236
TasI AATT 1 cut(s) 99
TatI WGTACW 2 cut(s) 47, 324
TauI GCSGC 2 cut(s) 199, 265
Tru1I TTAA 2 cut(s) 62, 348
Tru9I TTAA 2 cut(s) 62, 348
TscAI CASTG 1 cut(s) 206
TseFI GTSAC 3 cut(s) 364, 397, 455
TseI GCWGC 1 cut(s) 267
Tsp45I GTSAC 3 cut(s) 364, 397, 455
TspGWI ACGGA 2 cut(s) 44, 204
TspRI CASTG 1 cut(s) 206
VpaK11BI GGWCC 2 cut(s) 191, 286
XhoI CTCGAG 1 cut(s) 173
XspI CTAG 3 cut(s) 125, 158, 500
ZrmI AGTACT 2 cut(s) 49, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.