Rmu_sc0015603.1_g000001

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015603.1
OG0017635
Physical Location & Seq
Reverse (-)
2 .. 318
317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015603.1_g000001.1.cds

Sequence Viewer

Length: 317 bp
atgatgccggaaaatccccaatcccaccacagaaaaattgtgaagaccctctacaaaaccctagcacacagagacaccagaaccaccgtaatgctagtggctccagatctcgagtggtggttccacggaccgccgcagtgccagcacatgatgaagatgctaaccgggcagtcgaggcacttggagttcaagttccagccccgaagcctcaaggcggtcggggaccgtgtggtggccgagggatgggaaggtaagaaggcatattgggtacaggtgtggactgttaacaaggatgggatgatcacgcagttgcgcga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

105

Amino Acids

12.41

Weight (kDa)

9.93

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39910
prunus_persica Prupe.6G046300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071881
rosa_laevigata RLG00000036259
rosa_multiflora Rmu_sc0002149.1_g000007 Rmu_sc0015603.1_g000001
rosa_roxburghii Rroxscaffold_1G00009280
rosa_rugosa Rorug05G0415300
rosa_samantha Rh5BG491300 Rh5CG515200 Rh5DG502800
rosa_wichuraiana Rw5G043810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 315
AciI CCGC 3 cut(s) 131, 134, 215
AcoI YGGCCR 1 cut(s) 234
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 3 cut(s) 214, 232, 243
AgsI TTSAA 1 cut(s) 190
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
Alw26I GTCTC 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 1 cut(s) 234
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 128, 223
AsuC2I CCSGG 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 2 cut(s) 128, 223
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BbsI GAAGAC 1 cut(s) 50
BccI CCATC 2 cut(s) 237, 287
BclI TGATCA 1 cut(s) 300
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 2 cut(s) 62, 95
BglII AGATCT 1 cut(s) 106
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 2 cut(s) 128, 223
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 2 cut(s) 128, 223
BmiI GGNNCC 3 cut(s) 102, 122, 224
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 124, 237
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 232, 243
BseDI CCNNGG 2 cut(s) 124, 237
BseGI GGATG 3 cut(s) 248, 298, 303
BseLI CCNNNNNNNGG 3 cut(s) 214, 232, 243
Bsh1236I CGCG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 2 cut(s) 8, 165
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 3 cut(s) 214, 232, 243
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 110
Bsp143I GATC 2 cut(s) 106, 300
BspACI CCGC 3 cut(s) 131, 134, 215
BspANI GGCC 1 cut(s) 236
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 102, 122, 224
BssECI CCNNGG 2 cut(s) 124, 237
BssMI GATC 2 cut(s) 106, 300
Bst4CI ACNGT 3 cut(s) 88, 227, 283
BstC8I GCNNGC 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 3 cut(s) 248, 298, 303
BstFNI CGCG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 2 cut(s) 109, 303
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 2 cut(s) 106, 300
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 3 cut(s) 142, 166, 175
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 3 cut(s) 248, 298, 303
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 315
Cfr13I GGNCC 2 cut(s) 128, 223
CpoI CGGWCCG 1 cut(s) 128
Csp6I GTAC 1 cut(s) 269
CspI CGGWCCG 1 cut(s) 128
CviAII CATG 1 cut(s) 148
CviJI RGCY 4 cut(s) 101, 199, 207, 236
CviKI_1 RGCY 4 cut(s) 101, 199, 207, 236
CviQI GTAC 1 cut(s) 269
DpnI GATC 2 cut(s) 108, 302
DpnII GATC 2 cut(s) 106, 300
EaeI YGGCCR 1 cut(s) 234
Eco47I GGWCC 2 cut(s) 128, 223
Eco88I CYCGRG 1 cut(s) 110
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 149, 262
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 147
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 3 cut(s) 255, 305, 310
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 62, 95
GlaI GCGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 236
HapII CCGG 2 cut(s) 8, 165
HhaI GCGC 1 cut(s) 315
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 2 cut(s) 8, 165
Hpy166II GTNNAC 2 cut(s) 279, 286
Hpy188III TCNNGA 2 cut(s) 104, 110
Hpy8I GTNNAC 2 cut(s) 279, 286
HpyAV CCTTC 2 cut(s) 242, 250
HpyCH4III ACNGT 3 cut(s) 88, 227, 283
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 166, 175
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 313
Ksp22I TGATCA 1 cut(s) 300
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 106, 300
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 7 cut(s) 21, 91, 117, 155, 178, 209, 257
LweI GCATC 1 cut(s) 147
MaeI CTAG 2 cut(s) 62, 95
MalI GATC 2 cut(s) 108, 302
MboI GATC 2 cut(s) 106, 300
MboII GAAGA 2 cut(s) 55, 166
MflI RGATCY 1 cut(s) 106
MluCI AATT 1 cut(s) 36
MnlI CCTC 4 cut(s) 59, 168, 218, 232
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 89
MspI CCGG 2 cut(s) 8, 165
MspR9I CCNGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 142, 166, 175
NciI CCSGG 1 cut(s) 166
NdeII GATC 2 cut(s) 106, 300
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 3 cut(s) 102, 122, 224
NmeAIII GCCGAG 1 cut(s) 262
PaeR7I CTCGAG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 135
PspN4I GGNNCC 3 cut(s) 102, 122, 224
PspPI GGNCC 2 cut(s) 128, 223
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 89
Rsr2I CGGWCCG 1 cut(s) 128
RsrII CGGWCCG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 106, 300
Sau96I GGNCC 2 cut(s) 128, 223
ScrFI CCNGG 1 cut(s) 166
SetI ASST 2 cut(s) 253, 276
SfaNI GCATC 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 2 cut(s) 128, 223
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 110, 209
SmoI CTYRAG 2 cut(s) 110, 209
Sse9I AATT 1 cut(s) 36
SsiI CCGC 3 cut(s) 131, 134, 215
SspMI CTAG 2 cut(s) 62, 95
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 88, 227, 283
TaqI TCGA 2 cut(s) 111, 173
TasI AATT 1 cut(s) 36
TauI GCSGC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 167
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 128, 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
XhoI CTCGAG 1 cut(s) 110
XspI CTAG 2 cut(s) 62, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.