Prupe.6G046300_v2.0.a1

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017635
Physical Location & Seq
Reverse (-)
3342923 .. 3343420
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G046300.1

Sequence Viewer

Length: 498 bp
ATGGGGATTGATCAGGATGAAATCTCCACGGAAACCACGACTCTCGGGGAATTATTAGTGGCGGAAAACATCGGATCCCGGCACAGAAAAGTTGTCAAGGCGCTCTACAAGGCCTTGGCACTTAAAGACACTAGTACCACCTCAAAGCTCGTGGCTCCGGATCTTGAGTGGTGGTTCCATGGACCGCGGCATTGCCAGCACATGATGAGGACGCTGACCGGAGAATCGAGACACGTGGAGTTCAAGTTCAGGCCTCGGAGCATCACGCCCGTTGGTGACCGAGTGGTGGCGGAGGGATGGGAAGGATCGAAGGCGTACTGGGCGCATGTGTGGAGCGTCAAGGAAGGGATGATCACTCAGTTGCGTGAGTATTTCAACACGTGGGTGACGGTGATTGTTGGGAATTCAGAAGTTGAGGATGAGATGATGAAGCTGTGGCAGAGTGATCCTAGGGAGCGGTCTCAACGCTCATTGCCAGATATTGTACTAGCGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

166

Amino Acids

19.0

Weight (kDa)

6.31

Isoelectric Point (pI)

26.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39910
prunus_persica Prupe.6G046300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071881
rosa_laevigata RLG00000036259
rosa_multiflora Rmu_sc0002149.1_g000007 Rmu_sc0015603.1_g000001
rosa_roxburghii Rroxscaffold_1G00009280
rosa_rugosa Rorug05G0415300
rosa_samantha Rh5BG491300 Rh5CG515200 Rh5DG502800
rosa_wichuraiana Rw5G043810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 457
AccII CGCG 1 cut(s) 187
AccIII TCCGGA 1 cut(s) 157
AciI CCGC 5 cut(s) 62, 185, 187, 290, 457
AclWI GGATC 5 cut(s) 69, 82, 168, 313, 440
AcsI RAATTY 1 cut(s) 403
AcvI CACGTG 2 cut(s) 235, 381
AfaI GTAC 3 cut(s) 136, 317, 486
AfiI CCNNNNNNNGG 1 cut(s) 286
AflIII ACRYGT 2 cut(s) 232, 378
AgsI TTSAA 2 cut(s) 244, 376
AhlI ACTAGT 1 cut(s) 131
AleI CACNNNNGTG 1 cut(s) 383
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 2 cut(s) 148, 433
AluI AGCT 2 cut(s) 148, 433
Alw26I GTCTC 2 cut(s) 223, 465
AlwI GGATC 5 cut(s) 69, 82, 168, 313, 440
Ama87I CYCGRG 1 cut(s) 44
Aor13HI TCCGGA 1 cut(s) 157
AoxI GGCC 2 cut(s) 111, 251
ApoI RAATTY 1 cut(s) 403
AspA2I CCTAGG 1 cut(s) 449
AspLEI GCGC 2 cut(s) 103, 325
AspS9I GGNCC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 287, 397, 403
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 1 cut(s) 182
AvrII CCTAGG 1 cut(s) 449
BaeI ACNNNNGTAYC 2 cut(s) 118, 151
BamHI GGATCC 1 cut(s) 74
BauI CACGAG 1 cut(s) 149
BbrPI CACGTG 2 cut(s) 235, 381
BccI CCATC 1 cut(s) 291
BclI TGATCA 2 cut(s) 10, 351
BcnI CCSGG 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 223, 465
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 3 cut(s) 132, 450, 488
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 1 cut(s) 188
BlnI CCTAGG 1 cut(s) 449
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 79
Bme18I GGWCC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 182
BmiI GGNNCC 3 cut(s) 76, 156, 176
BmrFI CCNGG 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 79
BsaAI YACGTR 2 cut(s) 235, 381
BsaI GGTCTC 1 cut(s) 465
BsaJI CCNNGG 6 cut(s) 27, 114, 178, 185, 254, 449
BsaWI WCCGGW 2 cut(s) 157, 218
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 2 cut(s) 190, 470
BseAI TCCGGA 1 cut(s) 157
BseDI CCNNGG 6 cut(s) 27, 114, 178, 185, 254, 449
BseGI GGATG 4 cut(s) 22, 302, 354, 424
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMI GCAATG 2 cut(s) 190, 470
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 113, 253
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 3 cut(s) 79, 158, 219
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 2 cut(s) 223, 465
BsnI GGCC 2 cut(s) 113, 253
Bso31I GGTCTC 1 cut(s) 465
BsoBI CYCGRG 1 cut(s) 44
Bsp13I TCCGGA 1 cut(s) 157
Bsp143I GATC 6 cut(s) 10, 74, 160, 305, 351, 445
Bsp19I CCATGG 1 cut(s) 178
BspACI CCGC 5 cut(s) 62, 185, 187, 290, 457
BspANI GGCC 2 cut(s) 113, 253
BspCNI CTCAG 1 cut(s) 370
BspEI TCCGGA 1 cut(s) 157
BspFNI CGCG 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 76, 156, 176
BspPI GGATC 5 cut(s) 69, 82, 168, 313, 440
BspTNI GGTCTC 1 cut(s) 465
BsrBI CCGCTC 1 cut(s) 457
BsrDI GCAATG 2 cut(s) 190, 470
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 6 cut(s) 27, 114, 178, 185, 254, 449
BssMI GATC 6 cut(s) 10, 74, 160, 305, 351, 445
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 3 cut(s) 114, 178, 449
Bst2BI CACGAG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 391
BstBAI YACGTR 2 cut(s) 235, 381
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 1 cut(s) 357
BstDSI CCRYGG 3 cut(s) 27, 178, 185
BstEII GGTNACC 1 cut(s) 275
BstF5I GGATG 4 cut(s) 22, 302, 354, 424
BstFNI CGCG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 2 cut(s) 103, 325
BstKTI GATC 6 cut(s) 13, 77, 163, 308, 354, 448
BstMAI GTCTC 2 cut(s) 223, 465
BstMBI GATC 6 cut(s) 10, 74, 160, 305, 351, 445
BstMWI GCNNNNNNNGC 2 cut(s) 196, 320
BstNSI RCATGY 1 cut(s) 329
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 77
BstUI CGCG 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 74, 160
BstYI RGATCY 2 cut(s) 74, 160
BsuRI GGCC 2 cut(s) 113, 253
BtgI CCRYGG 3 cut(s) 27, 178, 185
BtsCI GGATG 4 cut(s) 22, 302, 354, 424
Cac8I GCNNGC 1 cut(s) 197
CfoI GCGC 2 cut(s) 103, 325
Cfr13I GGNCC 1 cut(s) 182
Cfr42I CCGCGG 1 cut(s) 188
CseI GACGC 2 cut(s) 220, 325
Csp6I GTAC 3 cut(s) 135, 316, 485
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 3 cut(s) 179, 202, 326
CviJI RGCY 5 cut(s) 113, 148, 155, 253, 433
CviKI_1 RGCY 5 cut(s) 113, 148, 155, 253, 433
CviQI GTAC 3 cut(s) 135, 316, 485
DdeI CTNAG 1 cut(s) 357
DpnI GATC 6 cut(s) 12, 76, 162, 307, 353, 447
DpnII GATC 6 cut(s) 10, 74, 160, 305, 351, 445
EciI GGCGGA 2 cut(s) 77, 305
Eco130I CCWWGG 3 cut(s) 114, 178, 449
Eco147I AGGCCT 2 cut(s) 113, 253
Eco31I GGTCTC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 182
Eco72I CACGTG 2 cut(s) 235, 381
Eco88I CYCGRG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 275
EcoO65I GGTNACC 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 403
EcoT14I CCWWGG 3 cut(s) 114, 178, 449
ErhI CCWWGG 3 cut(s) 114, 178, 449
FaeI CATG 3 cut(s) 182, 205, 329
FaiI YATR 4 cut(s) 180, 203, 327, 496
FatI CATG 3 cut(s) 178, 201, 325
FbaI TGATCA 2 cut(s) 10, 351
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 4 cut(s) 29, 309, 361, 431
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 3 cut(s) 132, 450, 488
GlaI GCGC 2 cut(s) 102, 324
GluI GCNGC 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 2 cut(s) 113, 253
HapII CCGG 3 cut(s) 79, 158, 219
HgaI GACGC 2 cut(s) 220, 325
HhaI GCGC 2 cut(s) 103, 325
Hin1II CATG 3 cut(s) 182, 205, 329
Hin6I GCGC 2 cut(s) 101, 323
HinP1I GCGC 2 cut(s) 101, 323
HinfI GANTC 2 cut(s) 40, 224
HpaII CCGG 3 cut(s) 79, 158, 219
HphI GGTGA 3 cut(s) 287, 397, 403
Hpy188I TCNGA 3 cut(s) 74, 258, 409
Hpy188III TCNNGA 4 cut(s) 14, 158, 164, 228
HpyAV CCTTC 3 cut(s) 296, 304, 338
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 2 cut(s) 234, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 320
HpyF3I CTNAG 1 cut(s) 357
HpySE526I ACGT 2 cut(s) 234, 380
Hsp92II CATG 3 cut(s) 182, 205, 329
HspAI GCGC 2 cut(s) 101, 323
Kpn2I TCCGGA 1 cut(s) 157
Ksp22I TGATCA 2 cut(s) 10, 351
KspI CCGCGG 1 cut(s) 188
Kzo9I GATC 6 cut(s) 10, 74, 160, 305, 351, 445
LmnI GCTCC 4 cut(s) 160, 258, 333, 454
LpnPI CCDG 7 cut(s) 92, 171, 209, 232, 235, 304, 489
LweI GCATC 1 cut(s) 270
MaeI CTAG 3 cut(s) 132, 450, 488
MaeII ACGT 2 cut(s) 234, 380
MaeIII GTNAC 2 cut(s) 275, 385
MalI GATC 6 cut(s) 12, 76, 162, 307, 353, 447
MbiI CCGCTC 1 cut(s) 457
MboI GATC 6 cut(s) 10, 74, 160, 305, 351, 445
MflI RGATCY 2 cut(s) 74, 160
MluCI AATT 2 cut(s) 50, 403
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 5 cut(s) 151, 201, 264, 286, 409
MroI TCCGGA 1 cut(s) 157
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 3 cut(s) 79, 158, 219
MspR9I CCNGG 1 cut(s) 79
MvnI CGCG 1 cut(s) 187
MwoI GCNNNNNNNGC 2 cut(s) 196, 320
NciI CCSGG 1 cut(s) 79
NcoI CCATGG 1 cut(s) 178
NdeII GATC 6 cut(s) 10, 74, 160, 305, 351, 445
NlaIII CATG 3 cut(s) 182, 205, 329
NlaIV GGNNCC 3 cut(s) 76, 156, 176
NmuCI GTSAC 2 cut(s) 275, 385
NspI RCATGY 1 cut(s) 329
OliI CACNNNNGTG 1 cut(s) 383
PceI AGGCCT 2 cut(s) 113, 253
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 189
PleI GAGTC 1 cut(s) 34
PmaCI CACGTG 2 cut(s) 235, 381
PmlI CACGTG 2 cut(s) 235, 381
PpsI GAGTC 1 cut(s) 34
Ppu21I YACGTR 2 cut(s) 235, 381
PspCI CACGTG 2 cut(s) 235, 381
PspEI GGTNACC 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 76, 156, 176
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 2 cut(s) 74, 160
RsaI GTAC 3 cut(s) 136, 317, 486
RsaNI GTAC 3 cut(s) 135, 316, 485
RseI CAYNNNNRTG 1 cut(s) 383
SacII CCGCGG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 6 cut(s) 10, 74, 160, 305, 351, 445
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 79
SetI ASST 5 cut(s) 143, 150, 237, 383, 435
SfaNI GCATC 1 cut(s) 270
Sfr303I CCGCGG 1 cut(s) 188
SgrBI CCGCGG 1 cut(s) 188
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 2 cut(s) 50, 403
SseBI AGGCCT 2 cut(s) 113, 253
SsiI CCGC 5 cut(s) 62, 185, 187, 290, 457
SspMI CTAG 3 cut(s) 132, 450, 488
StuI AGGCCT 2 cut(s) 113, 253
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 3 cut(s) 114, 178, 449
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 2 cut(s) 237, 383
TaqI TCGA 2 cut(s) 227, 308
TaqII GACCGA 1 cut(s) 294
TasI AATT 2 cut(s) 50, 403
TatI WGTACW 1 cut(s) 484
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseFI GTSAC 2 cut(s) 275, 385
Tsp45I GTSAC 2 cut(s) 275, 385
TspDTI ATGAA 2 cut(s) 33, 443
TspGWI ACGGA 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 182
XapI RAATTY 1 cut(s) 403
XceI RCATGY 1 cut(s) 329
XmaJI CCTAGG 1 cut(s) 449
XspI CTAG 3 cut(s) 132, 450, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.