Rroxscaffold_1G00009280

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017635
Physical Location & Seq
Reverse (-)
11698167 .. 11698523
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009280.1

Sequence Viewer

Length: 357 bp
ATGCTAGTGGCTCCAGATCTCGAGTGGTGGTTCCACGGACCGCCGCAGTGCCAGCACATGATGAAGATGCTAACCGGGCAGTCGAGGCACTTGGAGTTCAAGTTCCAGCCCCGAAGCCTCAAGGCGGTCGGGGACCGTGTGGTGGCGGAGGGATGGGAAGGTAAGAAGGCATATTGGGTACAGGTGTGGACTGTTAACAAGGATGGGATGATCACGCAGTTGCGCGAGTATTTCAACACTTGGGTGACGCTGATGGTTAGGGTTTCGGAGGCCGAGGACAAGATGGTGAAGCTGTGGCAGAGTGATTCAAAGGAGCGGTTCCGGCGCTCGTTGCCGGATATTGTGTTAGCTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

118

Amino Acids

14.01

Weight (kDa)

9.17

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 21 - 118 1.5e-27 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39910
prunus_persica Prupe.6G046300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071881
rosa_laevigata RLG00000036259
rosa_multiflora Rmu_sc0002149.1_g000007 Rmu_sc0015603.1_g000001
rosa_roxburghii Rroxscaffold_1G00009280
rosa_rugosa Rorug05G0415300
rosa_samantha Rh5BG491300 Rh5CG515200 Rh5DG502800
rosa_wichuraiana Rw5G043810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 316
AccII CGCG 1 cut(s) 225
AciI CCGC 5 cut(s) 41, 44, 125, 146, 316
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 2 cut(s) 124, 142
AgsI TTSAA 3 cut(s) 100, 235, 309
AleI CACNNNNGTG 1 cut(s) 242
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 2 cut(s) 292, 350
AluI AGCT 2 cut(s) 292, 350
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 1 cut(s) 270
AspLEI GCGC 2 cut(s) 225, 327
AspS9I GGNCC 2 cut(s) 38, 133
AsuC2I CCSGG 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 256, 298
AvaI CYCGRG 1 cut(s) 20
AvaII GGWCC 2 cut(s) 38, 133
BaeI ACNNNNGTAYC 2 cut(s) 170, 203
BccI CCATC 4 cut(s) 147, 197, 247, 277
BclI TGATCA 1 cut(s) 210
BcnI CCSGG 1 cut(s) 76
BfaI CTAG 1 cut(s) 5
BfoI RGCGCY 1 cut(s) 328
BglII AGATCT 1 cut(s) 16
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 2 cut(s) 38, 133
BmeT110I CYCGRG 1 cut(s) 20
BmgT120I GGNCC 2 cut(s) 38, 133
BmiI GGNNCC 4 cut(s) 12, 32, 134, 320
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 34, 273
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 142
BseDI CCNNGG 2 cut(s) 34, 273
BseGI GGATG 3 cut(s) 158, 208, 213
BseLI CCNNNNNNNGG 2 cut(s) 124, 142
Bsh1236I CGCG 1 cut(s) 225
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 272
BsiEI CGRYCG 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 3 cut(s) 75, 322, 335
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 124, 142
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 2 cut(s) 16, 210
BspACI CCGC 5 cut(s) 41, 44, 125, 146, 316
BspANI GGCC 1 cut(s) 272
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 4 cut(s) 12, 32, 134, 320
BsrBI CCGCTC 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 34, 273
BssMI GATC 2 cut(s) 16, 210
Bst4CI ACNGT 2 cut(s) 137, 193
BstC8I GCNNGC 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 3 cut(s) 158, 208, 213
BstFNI CGCG 1 cut(s) 225
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 2 cut(s) 225, 327
BstKTI GATC 2 cut(s) 19, 213
BstMBI GATC 2 cut(s) 16, 210
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 5 cut(s) 52, 76, 85, 322, 331
BstSCI CCNGG 1 cut(s) 74
BstUI CGCG 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 3 cut(s) 158, 208, 213
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 53
CfoI GCGC 2 cut(s) 225, 327
Cfr13I GGNCC 2 cut(s) 38, 133
CpoI CGGWCCG 1 cut(s) 38
CseI GACGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 179
CspI CGGWCCG 1 cut(s) 38
CviAII CATG 1 cut(s) 58
CviJI RGCY 6 cut(s) 11, 109, 117, 272, 292, 350
CviKI_1 RGCY 6 cut(s) 11, 109, 117, 272, 292, 350
CviQI GTAC 1 cut(s) 179
DpnI GATC 2 cut(s) 18, 212
DpnII GATC 2 cut(s) 16, 210
EciI GGCGGA 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 38, 133
Eco88I CYCGRG 1 cut(s) 20
FaeI CATG 1 cut(s) 61
FaiI YATR 2 cut(s) 59, 172
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 57
FbaI TGATCA 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 3 cut(s) 165, 215, 220
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 1 cut(s) 5
GlaI GCGC 2 cut(s) 224, 326
GluI GCNGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 1 cut(s) 272
HapII CCGG 3 cut(s) 75, 322, 335
HgaI GACGC 1 cut(s) 256
HhaI GCGC 2 cut(s) 225, 327
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 2 cut(s) 223, 325
HinP1I GCGC 2 cut(s) 223, 325
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 1 cut(s) 305
HpaI GTTAAC 1 cut(s) 196
HpaII CCGG 3 cut(s) 75, 322, 335
HphI GGTGA 2 cut(s) 256, 298
Hpy166II GTNNAC 2 cut(s) 189, 196
Hpy188I TCNGA 2 cut(s) 268, 356
Hpy188III TCNNGA 2 cut(s) 14, 20
Hpy8I GTNNAC 2 cut(s) 189, 196
HpyAV CCTTC 2 cut(s) 152, 160
HpyCH4III ACNGT 2 cut(s) 137, 193
HpyF10VI GCNNNNNNNGC 5 cut(s) 52, 76, 85, 322, 331
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 2 cut(s) 223, 325
Ksp22I TGATCA 1 cut(s) 210
KspAI GTTAAC 1 cut(s) 196
Kzo9I GATC 2 cut(s) 16, 210
LmnI GCTCC 2 cut(s) 16, 313
LpnPI CCDG 7 cut(s) 27, 65, 88, 119, 167, 335, 348
LweI GCATC 1 cut(s) 57
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 244
MalI GATC 2 cut(s) 18, 212
MbiI CCGCTC 1 cut(s) 316
MboI GATC 2 cut(s) 16, 210
MboII GAAGA 1 cut(s) 76
MflI RGATCY 1 cut(s) 16
MnlI CCTC 5 cut(s) 78, 128, 142, 262, 268
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 242
MspI CCGG 3 cut(s) 75, 322, 335
MspR9I CCNGG 1 cut(s) 76
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 5 cut(s) 52, 76, 85, 322, 331
NciI CCSGG 1 cut(s) 76
NdeII GATC 2 cut(s) 16, 210
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 4 cut(s) 12, 32, 134, 320
NmeAIII GCCGAG 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 20
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 45
PspN4I GGNNCC 4 cut(s) 12, 32, 134, 320
PspPI GGNCC 2 cut(s) 38, 133
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 242
Rsr2I CGGWCCG 1 cut(s) 38
RsrII CGGWCCG 1 cut(s) 38
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 2 cut(s) 16, 210
Sau96I GGNCC 2 cut(s) 38, 133
ScrFI CCNGG 1 cut(s) 76
SetI ASST 4 cut(s) 163, 186, 294, 352
SfaNI GCATC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 20
SinI GGWCC 2 cut(s) 38, 133
SlaI CTCGAG 1 cut(s) 20
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 2 cut(s) 20, 119
SmoI CTYRAG 2 cut(s) 20, 119
SsiI CCGC 5 cut(s) 41, 44, 125, 146, 316
SspMI CTAG 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 74
TaaI ACNGT 2 cut(s) 137, 193
TaqI TCGA 2 cut(s) 21, 83
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 53
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 53
VpaK11BI GGWCC 2 cut(s) 38, 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XhoI CTCGAG 1 cut(s) 20
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.