Rorug05G0415300

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017635
Physical Location & Seq
Reverse (-)
57522809 .. 57524892
2084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0415300.1

Sequence Viewer

Length: 669 bp
ATGGACGGTTGTGATGGAAGTGTGAAAGAAGATCAATTGCCGTGGGATTGTAATTACGTGGTGATGATCATGTGGAAGCGCAAACCGGCTGTTGTTGTCGAAGCTTGGGGTTCCTTGGGGAGGCGGCGCTGTGGTAATCCGGTCTCCGGGTCGCCACAGAAGGAAACTTATCCGAGTTGGAACCCGATAAATAGAGGTGGCGACATGGTGGTGAAGGACGTCGATGTTTGGGTTCCTCGAGATGAAGGAGGCGAGAATGATGATCTCCCTAATTATGTGAAGATATTCCATGGAGGGCGCATAATGTTAAAACCTGTCAAACGCACTTGCCACCAAAGGAAAACAAAAAGAGGAAGGTCAGGAATGAAGAAGGTCAAGGCCAGGAGAGGGAAGAAAGGTCATATGTCTGCAAATGAATTGAGGAAGAAAGCAAGGGAGAGAGCAGAGTATCAAAGGAAAAAGTTTGCTGCTGCCAAAGTGCAAAGCTGGCAGCAAATAGGTCTGCCCCTTCCACATCAAGGCCTGCACAATCTACAACCAAACCTACAACCTCCTGGCCAGCCCAAACTACATCCGCCCCAACCAGACCTACGAGTTGAAGGCCTCCACAACCTTCAACAACATCAAGCAAGGAGGCTGCAACTTCAACAAGGACATCTCAGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

222

Amino Acids

25.38

Weight (kDa)

10.31

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017635)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39910
prunus_persica Prupe.6G046300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0071881
rosa_laevigata RLG00000036259
rosa_multiflora Rmu_sc0002149.1_g000007 Rmu_sc0015603.1_g000001
rosa_roxburghii Rroxscaffold_1G00009280
rosa_rugosa Rorug05G0415300
rosa_samantha Rh5BG491300 Rh5CG515200 Rh5DG502800
rosa_wichuraiana Rw5G043810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 222
AciI CCGC 2 cut(s) 124, 575
AcoI YGGCCR 1 cut(s) 556
AcyI GRCGYC 1 cut(s) 219
AfiI CCNNNNNNNGG 4 cut(s) 120, 146, 387, 518
AgsI TTSAA 3 cut(s) 599, 617, 647
AjnI CCWGG 2 cut(s) 380, 553
AluBI AGCT 2 cut(s) 104, 486
AluI AGCT 2 cut(s) 104, 486
Alw26I GTCTC 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 4 cut(s) 378, 520, 556, 601
ApeKI GCWGC 4 cut(s) 467, 470, 490, 637
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 3 cut(s) 81, 129, 300
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 73, 223
AvaI CYCGRG 1 cut(s) 237
BalI TGGCCA 1 cut(s) 558
BbvI GCAGC 4 cut(s) 454, 457, 502, 624
BccI CCATC 1 cut(s) 8
BceAI ACGGC 1 cut(s) 25
BciT130I CCWGG 2 cut(s) 382, 555
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 148
BfoI RGCGCY 1 cut(s) 130
BisI GCNGC 5 cut(s) 125, 468, 471, 491, 638
BlsI GCNGC 5 cut(s) 126, 469, 472, 492, 639
Bme1390I CCNGG 3 cut(s) 148, 382, 555
BmeT110I CYCGRG 1 cut(s) 237
BmiI GGNNCC 3 cut(s) 112, 182, 234
BmrFI CCNGG 3 cut(s) 148, 382, 555
BpuMI CCSGG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 3 cut(s) 41, 114, 289
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 146, 387, 518
Bse118I RCCGGY 1 cut(s) 85
BseBI CCWGG 2 cut(s) 382, 555
BseDI CCNNGG 3 cut(s) 41, 114, 289
BseGI GGATG 1 cut(s) 571
BseLI CCNNNNNNNGG 4 cut(s) 120, 146, 387, 518
BseXI GCAGC 4 cut(s) 454, 457, 502, 624
BsgI GTGCAG 1 cut(s) 509
BshFI GGCC 4 cut(s) 380, 522, 558, 603
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 3 cut(s) 86, 140, 147
BslI CCNNNNNNNGG 4 cut(s) 120, 146, 387, 518
BsmAI GTCTC 1 cut(s) 148
BsnI GGCC 4 cut(s) 380, 522, 558, 603
Bso31I GGTCTC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 237
Bsp143I GATC 3 cut(s) 31, 66, 262
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 2 cut(s) 124, 575
BspANI GGCC 4 cut(s) 380, 522, 558, 603
BspLI GGNNCC 3 cut(s) 112, 182, 234
BspTNI GGTCTC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 85
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 3 cut(s) 41, 114, 289
BssMI GATC 3 cut(s) 31, 66, 262
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 2 cut(s) 114, 289
Bst2UI CCWGG 2 cut(s) 382, 555
Bst4CI ACNGT 1 cut(s) 8
BstACI GRCGYC 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 58
BstC8I GCNNGC 3 cut(s) 488, 524, 560
BstDEI CTNAG 1 cut(s) 659
BstDSI CCRYGG 2 cut(s) 41, 289
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 571
BstH2I RGCGCY 1 cut(s) 130
BstHHI GCGC 3 cut(s) 81, 129, 300
BstKTI GATC 3 cut(s) 34, 69, 265
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 3 cut(s) 31, 66, 262
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNI CCWGG 2 cut(s) 382, 555
BstSCI CCNGG 3 cut(s) 146, 380, 553
BstV1I GCAGC 4 cut(s) 454, 457, 502, 624
BsuRI GGCC 4 cut(s) 380, 522, 558, 603
BtgI CCRYGG 2 cut(s) 41, 289
BtsCI GGATG 1 cut(s) 571
Cac8I GCNNGC 3 cut(s) 488, 524, 560
CfoI GCGC 3 cut(s) 81, 129, 300
Cfr10I RCCGGY 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 23, 58
CviAII CATG 3 cut(s) 70, 205, 290
CviJI RGCY 9 cut(s) 89, 104, 380, 486, 522, 558, 562, 603, 637
CviKI_1 RGCY 9 cut(s) 89, 104, 380, 486, 522, 558, 562, 603, 637
DdeI CTNAG 1 cut(s) 659
DpnI GATC 3 cut(s) 33, 68, 264
DpnII GATC 3 cut(s) 31, 66, 262
EaeI YGGCCR 1 cut(s) 556
EciI GGCGGA 1 cut(s) 564
Eco130I CCWWGG 2 cut(s) 114, 289
Eco147I AGGCCT 2 cut(s) 522, 603
Eco31I GGTCTC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 237
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 380, 553
EcoT14I CCWWGG 2 cut(s) 114, 289
ErhI CCWWGG 2 cut(s) 114, 289
FaeI CATG 3 cut(s) 73, 208, 293
FaiI YATR 7 cut(s) 71, 206, 276, 291, 302, 402, 404
FatI CATG 3 cut(s) 69, 204, 289
FauNDI CATATG 1 cut(s) 402
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 5 cut(s) 125, 468, 471, 491, 638
FokI GGATG 1 cut(s) 558
Fsp4HI GCNGC 5 cut(s) 125, 468, 471, 491, 638
GlaI GCGC 3 cut(s) 80, 128, 299
GluI GCNGC 5 cut(s) 125, 468, 471, 491, 638
HaeII RGCGCY 1 cut(s) 130
HaeIII GGCC 4 cut(s) 380, 522, 558, 603
HapII CCGG 3 cut(s) 86, 140, 147
HhaI GCGC 3 cut(s) 81, 129, 300
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 3 cut(s) 73, 208, 293
Hin6I GCGC 3 cut(s) 79, 127, 298
HinP1I GCGC 3 cut(s) 79, 127, 298
HindIII AAGCTT 1 cut(s) 102
HpaII CCGG 3 cut(s) 86, 140, 147
HphI GGTGA 2 cut(s) 73, 223
Hpy188I TCNGA 2 cut(s) 174, 662
Hpy188III TCNNGA 2 cut(s) 239, 360
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 8 cut(s) 154, 208, 239, 348, 364, 518, 593, 623
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 2 cut(s) 57, 219
HpyCH4V TGCA 4 cut(s) 410, 481, 526, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 1 cut(s) 659
HpySE526I ACGT 2 cut(s) 57, 219
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 3 cut(s) 73, 208, 293
HspAI GCGC 3 cut(s) 79, 127, 298
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 3 cut(s) 31, 66, 262
Lsp1109I GCAGC 4 cut(s) 454, 457, 502, 624
MaeII ACGT 2 cut(s) 57, 219
MalI GATC 3 cut(s) 33, 68, 264
MboI GATC 3 cut(s) 31, 66, 262
MboII GAAGA 5 cut(s) 41, 292, 379, 403, 436
MfeI CAATTG 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 4 cut(s) 35, 52, 271, 416
MluNI TGGCCA 1 cut(s) 558
MmeI TCCRAC 1 cut(s) 158
Mox20I TGGCCA 1 cut(s) 558
MroXI GAANNNNTTC 1 cut(s) 284
MscI TGGCCA 1 cut(s) 558
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 558
MspI CCGG 3 cut(s) 86, 140, 147
MspR9I CCNGG 3 cut(s) 148, 382, 555
MunI CAATTG 1 cut(s) 35
MvaI CCWGG 2 cut(s) 382, 555
MwoI GCNNNNNNNGC 1 cut(s) 487
NciI CCSGG 1 cut(s) 148
NcoI CCATGG 1 cut(s) 289
NdeI CATATG 1 cut(s) 402
NdeII GATC 3 cut(s) 31, 66, 262
NlaIII CATG 3 cut(s) 73, 208, 293
NlaIV GGNNCC 3 cut(s) 112, 182, 234
PaeR7I CTCGAG 1 cut(s) 237
PceI AGGCCT 2 cut(s) 522, 603
PdmI GAANNNNTTC 1 cut(s) 284
PkrI GCNGC 5 cut(s) 126, 469, 472, 492, 639
Ppu21I YACGTR 1 cut(s) 58
Psp6I CCWGG 2 cut(s) 380, 553
PspGI CCWGG 2 cut(s) 380, 553
PspN4I GGNNCC 3 cut(s) 112, 182, 234
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 5 cut(s) 125, 468, 471, 491, 638
Sau3AI GATC 3 cut(s) 31, 66, 262
ScrFI CCNGG 3 cut(s) 148, 382, 555
Sfr274I CTCGAG 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 237
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 4 cut(s) 35, 52, 271, 416
SseBI AGGCCT 2 cut(s) 522, 603
SsiI CCGC 2 cut(s) 124, 575
StuI AGGCCT 2 cut(s) 522, 603
StyD4I CCNGG 3 cut(s) 146, 380, 553
StyI CCWWGG 2 cut(s) 114, 289
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 2 cut(s) 60, 222
TaqI TCGA 3 cut(s) 99, 222, 238
TasI AATT 4 cut(s) 35, 52, 271, 416
TauI GCSGC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TseI GCWGC 4 cut(s) 467, 470, 490, 637
TspDTI ATGAA 3 cut(s) 258, 380, 429
XagI CCTNNNNNAGG 1 cut(s) 118
XhoI CTCGAG 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 284
ZraI GACGTC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.