Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016296

Physical Location & Seq

Genomic Coordinates Forward (+)

34281668 .. 34284336

Gene Structure 2669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAACCCAGAAACTGAAGTGGCAAATCCTCATCATCACCACTTGGTTCTAATCCATGGCGTAGGGCATGGAGCTTGGTGCTGGTACAAACTGAGATGTCTCCTGGAAGCATCAGGCCACAAAGTGACATGCATGGATCTCAAAGGTGCTGGTATTGATCAGTCTGATCCCAATACAATCCTCACTTTCGAAGACTATAACAAGCCTCTCATCAACTTCCTGTCCACCTTGCCCCATGATGAAAAGGTAATACTTGTTGGACACAGCGCAGGTGGTATGAGCTTGACAGATGCAATACACAGGTTTGGTAACAAAATACATATGGCCATATATGTGGCTGCAACCATGTTAAAGTATGGGTTTTCGACAGATCAAGATTTCATAGATGGAGAACCTGACTTGTCAGCATTTGGAAACGTAAATGAATTTATATTTGGGTTCGGACCTGACCAGCCTCCAACTAGTGTCATAATGAAGGAAGACTTTAGGCACCAAATCTTGTATCATATGAGCCCTATCCAGGACTCGAGTTTAGCTTCGATGCTGCTGCGTCCTGGACCGGTTATGGCGTTGCAAGGCGCTCGATTCAAAGGAAATGGTGATGAAGTAGATTGTGTGCCTAGAGTGTATATCAAGACCATGAAAGATCGTGTTCTAAAGCCAGAGCAACAAGATGCTATGATTAAGAGGTGGCCACCATTCCAAGTCTTTGTTCTTGATAGCGACCATAGCCCGTTTTTCTCCACCCCCTTTTCTCTCTTTGATTTGTTACTTAAAGCATCGGCTTCCATAAAATATTATTATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009683 GO:0009850 GO:0009987 GO:0010817 GO:0016787 GO:0016788 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033473 GO:0034641 GO:0034754 GO:0042430 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0046483 GO:0048367 GO:0048731 GO:0048856 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

270

Amino Acids

30.23

Weight (kDa)

6.03

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	11 - 117	6.7e-10	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	14 - 132	1.3e-13	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	15 - 250	1.6e-19	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40710 FvH4_3g40710
malus_domestica	MD03G1050200.v1.1 MD03G1050400.v1.1
prunus_persica	Prupe.6G040000_v2.0.a1 Prupe.6G040000_v2.0.a1 Prupe.6G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073501
rosa_multiflora	Rmu_ssc0000226.1_g000015
rosa_rugosa	Rorug05G0423900 Rorug05G0424000
rosa_samantha	Rh5AG481300 Rh5BG502000 Rh5CG525200
rosa_wichuraiana	Rw5G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	489
AclWI	GGATC	2 cut(s)	144, 161
AcoI	YGGCCR	2 cut(s)	324, 692
AcsI	RAATTY	1 cut(s)	425
AcuI	CTGAAG	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	124
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	520
AgeI	ACCGGT	1 cut(s)	559
AgsI	TTSAA	1 cut(s)	589
AhlI	ACTAGT	1 cut(s)	461
AjnI	CCWGG	3 cut(s)	102, 519, 553
AjuI	GAANNNNNNNTTGG	4 cut(s)	417, 449, 696, 728
AluBI	AGCT	3 cut(s)	74, 282, 536
AluI	AGCT	3 cut(s)	74, 282, 536
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	2 cut(s)	144, 161
AlwNI	CAGNNNCTG	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	526
AoxI	GGCC	3 cut(s)	115, 324, 692
ApeKI	GCWGC	3 cut(s)	338, 544, 547
ApoI	RAATTY	1 cut(s)	425
AsiGI	ACCGGT	1 cut(s)	559
AspLEI	GCGC	2 cut(s)	269, 581
AspS9I	GGNCC	2 cut(s)	443, 557
AsuHPI	GGTGA	2 cut(s)	29, 611
AsuII	TTCGAA	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	526
AvaII	GGWCC	2 cut(s)	443, 557
BalI	TGGCCA	2 cut(s)	326, 694
BanI	GGYRCC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	515
BbsI	GAAGAC	2 cut(s)	198, 486
BbvI	GCAGC	3 cut(s)	325, 531, 534
BccI	CCATC	1 cut(s)	380
BcgI	CGANNNNNNTGC	4 cut(s)	529, 563, 563, 597
BciT130I	CCWGG	3 cut(s)	104, 521, 555
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	104
BcuI	ACTAGT	1 cut(s)	461
BfaI	CTAG	2 cut(s)	462, 621
BfoI	RGCGCY	1 cut(s)	582
BfuAI	ACCTGC	1 cut(s)	260
BisI	GCNGC	3 cut(s)	339, 545, 548
BlsI	GCNGC	3 cut(s)	340, 546, 549
Bme1390I	CCNGG	3 cut(s)	104, 521, 555
Bme18I	GGWCC	2 cut(s)	443, 557
BmeT110I	CYCGRG	1 cut(s)	526
BmgT120I	GGNCC	2 cut(s)	443, 557
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	3 cut(s)	104, 521, 555
BmsI	GCATC	5 cut(s)	119, 280, 531, 664, 788
BpiI	GAAGAC	2 cut(s)	198, 486
Bpu14I	TTCGAA	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse118I	RCCGGY	1 cut(s)	559
BseBI	CCWGG	3 cut(s)	104, 521, 555
BseDI	CCNNGG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	325, 531, 534
BshFI	GGCC	3 cut(s)	117, 326, 694
BshNI	GGYRCC	1 cut(s)	489
BshTI	ACCGGT	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	526
BsiSI	CCGG	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	117, 326, 694
BsoBI	CYCGRG	1 cut(s)	526
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	5 cut(s)	136, 157, 166, 370, 646
Bsp19I	CCATGG	1 cut(s)	55
BspANI	GGCC	3 cut(s)	117, 326, 694
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	491
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	2 cut(s)	144, 161
BspT104I	TTCGAA	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	489
BsrFI	RCCGGY	1 cut(s)	559
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	5 cut(s)	136, 157, 166, 370, 646
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	3 cut(s)	104, 521, 555
BstBI	TTCGAA	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	92
BstDSI	CCRYGG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	582
BstHHI	GCGC	2 cut(s)	269, 581
BstKTI	GATC	5 cut(s)	139, 160, 169, 373, 649
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	5 cut(s)	136, 157, 166, 370, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	729
BstNI	CCWGG	3 cut(s)	104, 521, 555
BstNSI	RCATGY	1 cut(s)	132
BstSCI	CCNGG	3 cut(s)	102, 519, 553
BstV1I	GCAGC	3 cut(s)	325, 531, 534
BstV2I	GAAGAC	2 cut(s)	198, 486
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	117, 326, 694
BtgI	CCRYGG	1 cut(s)	55
BveI	ACCTGC	1 cut(s)	260
CaiI	CAGNNNCTG	1 cut(s)	14
CfoI	GCGC	2 cut(s)	269, 581
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	443, 557
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	1 cut(s)	85
CspAI	ACCGGT	1 cut(s)	559
CviAII	CATG	7 cut(s)	56, 68, 129, 133, 236, 346, 640
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	5 cut(s)	138, 159, 168, 372, 648
DpnII	GATC	5 cut(s)	136, 157, 166, 370, 646
DraIII	CACNNNGTG	1 cut(s)	124
EaeI	YGGCCR	2 cut(s)	324, 692
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	515
Eco47I	GGWCC	2 cut(s)	443, 557
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	526
EcoRII	CCWGG	3 cut(s)	102, 519, 553
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	7 cut(s)	59, 71, 132, 136, 239, 349, 643
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FatI	CATG	7 cut(s)	55, 67, 128, 132, 235, 345, 639
FauNDI	CATATG	2 cut(s)	321, 507
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	339, 545, 548
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	3 cut(s)	339, 545, 548
FspBI	CTAG	2 cut(s)	462, 621
GlaI	GCGC	2 cut(s)	268, 580
GluI	GCNGC	3 cut(s)	339, 545, 548
HaeII	RGCGCY	1 cut(s)	582
HaeIII	GGCC	3 cut(s)	117, 326, 694
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	1 cut(s)	539
HhaI	GCGC	2 cut(s)	269, 581
Hin1II	CATG	7 cut(s)	59, 71, 132, 136, 239, 349, 643
Hin6I	GCGC	2 cut(s)	267, 579
HinP1I	GCGC	2 cut(s)	267, 579
HinfI	GANTC	2 cut(s)	524, 585
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	2 cut(s)	29, 611
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	2 cut(s)	166, 443
Hpy188III	TCNNGA	3 cut(s)	374, 634, 716
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	469
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	4 cut(s)	132, 293, 341, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	729
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	7 cut(s)	59, 71, 132, 136, 239, 349, 643
HspAI	GCGC	2 cut(s)	267, 579
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	136, 157, 166, 370, 646
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	3 cut(s)	325, 531, 534
LweI	GCATC	5 cut(s)	119, 280, 531, 664, 788
MaeI	CTAG	2 cut(s)	462, 621
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	3 cut(s)	124, 308, 768
MalI	GATC	5 cut(s)	138, 159, 168, 372, 648
MboI	GATC	5 cut(s)	136, 157, 166, 370, 646
MboII	GAAGA	2 cut(s)	203, 491
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	515
MlsI	TGGCCA	2 cut(s)	326, 694
MluCI	AATT	1 cut(s)	425
MluNI	TGGCCA	2 cut(s)	326, 694
MlyI	GAGTC	1 cut(s)	518
MmeI	TCCRAC	2 cut(s)	238, 482
MnlI	CCTC	5 cut(s)	39, 191, 216, 465, 681
Mox20I	TGGCCA	2 cut(s)	326, 694
Mph1103I	ATGCAT	1 cut(s)	134
MscI	TGGCCA	2 cut(s)	326, 694
MseI	TTAA	3 cut(s)	350, 684, 774
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	2 cut(s)	326, 694
MspI	CCGG	1 cut(s)	560
MspR9I	CCNGG	3 cut(s)	104, 521, 555
MvaI	CCWGG	3 cut(s)	104, 521, 555
MwoI	GCNNNNNNNGC	1 cut(s)	729
NcoI	CCATGG	1 cut(s)	55
NdeI	CATATG	2 cut(s)	321, 507
NdeII	GATC	5 cut(s)	136, 157, 166, 370, 646
NlaIII	CATG	7 cut(s)	59, 71, 132, 136, 239, 349, 643
NlaIV	GGNNCC	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	134
NspI	RCATGY	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	189
PaeR7I	CTCGAG	1 cut(s)	526
PaqCI	CACCTGC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	585
PfoI	TCCNGGA	3 cut(s)	102, 519, 553
PinAI	ACCGGT	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	340, 546, 549
PleI	GAGTC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	518
Psp6I	CCWGG	3 cut(s)	102, 519, 553
PspGI	CCWGG	3 cut(s)	102, 519, 553
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	2 cut(s)	443, 557
PspXI	VCTCGAGB	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	350, 684, 774
SatI	GCNGC	3 cut(s)	339, 545, 548
Sau3AI	GATC	5 cut(s)	136, 157, 166, 370, 646
Sau96I	GGNCC	2 cut(s)	443, 557
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	3 cut(s)	104, 521, 555
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	5 cut(s)	119, 280, 531, 664, 788
Sfr274I	CTCGAG	1 cut(s)	526
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	2 cut(s)	443, 557
SlaI	CTCGAG	1 cut(s)	526
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
SpeI	ACTAGT	1 cut(s)	461
Sse9I	AATT	1 cut(s)	425
SspI	AATATT	1 cut(s)	797
SspMI	CTAG	2 cut(s)	462, 621
StyD4I	CCNGG	3 cut(s)	102, 519, 553
StyI	CCWWGG	1 cut(s)	55
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	5 cut(s)	189, 365, 527, 539, 583
TasI	AATT	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	3 cut(s)	350, 684, 774
Tru9I	TTAA	3 cut(s)	350, 684, 774
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	338, 544, 547
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	8 cut(s)	17, 255, 370, 438, 488, 618, 656, 795
VpaK11BI	GGWCC	2 cut(s)	443, 557
XapI	RAATTY	1 cut(s)	425
XceI	RCATGY	1 cut(s)	132
XhoI	CTCGAG	1 cut(s)	526
XspI	CTAG	2 cut(s)	462, 621
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.