Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016296

Physical Location & Seq

Genomic Coordinates Forward (+)

79848780 .. 79850660

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG502000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAACCCAGAAACTGAAATAGCAAATCCACATCATCATCACTTGGTTCTAATCCATGGCGTAGGGCATGGAGCTTGGTGCTGGTACAAAATTCGGTGTCTCCTGGAAGCATCAGGCTACAAAGTTACATGCATAGATCTCAAAGGTGCTGGTATTGATCTGTCTGATCCCAACACAGTCCTCACTTTCGAAGACTATAACACGCCTCTCATCCACTTCCTGTCCTCCTTGCCTCAGAATGAAAAGGTAATACTTGTTGGACACAGTGCAGGAGGTTTGAGCTTGACAGATGCAATACACAGGTTTGGTAATAAAATAAATATGGCCATATATGTGGCTGCAAACATGTTAAAGCATGGATTTTCTACAGATCAAGATATCAAGGATGGAGTACCTGACTTATCAGCATTTGGAAACGTAAATGAGTTTACATTTGGGTTGGGACCAGAGCAGCCTCCAACTAGCGTCATAATTAAGGAGAACTTTAGGCACCAAATCATGTATCATATGAGCCCTGTCCAGGTAATGAAGCACTTCAGTACATGTATATATCTCATATACATATATATTCTTCGAGCCTTAAATAATAAGAGTGTCTTTCCTCTAGCATTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009683 GO:0009850 GO:0009987 GO:0010817 GO:0016787 GO:0016788 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033473 GO:0034641 GO:0034754 GO:0042430 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0046483 GO:0048367 GO:0048731 GO:0048856 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

205

Amino Acids

22.92

Weight (kDa)

6.48

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	11 - 116	3e-10	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	14 - 127	1.6e-11	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	15 - 127	3.6e-14	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40710 FvH4_3g40710
malus_domestica	MD03G1050200.v1.1 MD03G1050400.v1.1
prunus_persica	Prupe.6G040000_v2.0.a1 Prupe.6G040000_v2.0.a1 Prupe.6G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073501
rosa_multiflora	Rmu_ssc0000226.1_g000015
rosa_rugosa	Rorug05G0423900 Rorug05G0424000
rosa_samantha	Rh5AG481300 Rh5BG502000 Rh5CG525200
rosa_wichuraiana	Rw5G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	489
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	1 cut(s)	90
AcuI	CTGAAG	1 cut(s)	520
AfaI	GTAC	3 cut(s)	86, 393, 541
AfiI	CCNNNNNNNGG	1 cut(s)	520
AflIII	ACRYGT	2 cut(s)	345, 542
AjnI	CCWGG	2 cut(s)	102, 519
AluBI	AGCT	2 cut(s)	74, 282
AluI	AGCT	2 cut(s)	74, 282
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	2 cut(s)	338, 451
ApoI	RAATTY	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	533
AspS9I	GGNCC	1 cut(s)	443
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	443
BalI	TGGCCA	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	325, 463
BccI	CCATC	1 cut(s)	380
BciT130I	CCWGG	2 cut(s)	104, 521
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	2 cut(s)	462, 605
BfmI	CTRYAG	1 cut(s)	366
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	339, 452
BlsI	GCNGC	2 cut(s)	340, 453
Bme1390I	CCNGG	2 cut(s)	104, 521
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	2 cut(s)	444, 491
BmrFI	CCNGG	2 cut(s)	104, 521
BmsI	GCATC	2 cut(s)	119, 280
BpiI	GAAGAC	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
BseBI	CCWGG	2 cut(s)	104, 521
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	210, 391
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMII	CTCAG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	325, 463
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp143I	GATC	4 cut(s)	136, 157, 166, 370
Bsp19I	CCATGG	1 cut(s)	55
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	444, 491
BspPI	GGATC	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	4 cut(s)	136, 157, 166, 370
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	104, 521
Bst4CI	ACNGT	2 cut(s)	178, 266
BstBI	TTCGAA	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	55
BstF5I	GGATG	2 cut(s)	210, 391
BstKTI	GATC	4 cut(s)	139, 160, 169, 373
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	4 cut(s)	136, 157, 166, 370
BstNI	CCWGG	2 cut(s)	104, 521
BstNSI	RCATGY	3 cut(s)	132, 349, 546
BstSCI	CCNGG	2 cut(s)	102, 519
BstSFI	CTRYAG	1 cut(s)	366
BstV1I	GCAGC	2 cut(s)	325, 463
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	55
BtsCI	GGATG	2 cut(s)	210, 391
BtsIMutI	CAGTG	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	14
Cfr13I	GGNCC	1 cut(s)	443
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	3 cut(s)	85, 392, 540
CviAII	CATG	7 cut(s)	56, 68, 129, 346, 356, 499, 543
CviJI	RGCY	8 cut(s)	74, 117, 282, 326, 338, 454, 513, 578
CviKI_1	RGCY	8 cut(s)	74, 117, 282, 326, 338, 454, 513, 578
CviQI	GTAC	3 cut(s)	85, 392, 540
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	4 cut(s)	138, 159, 168, 372
DpnII	GATC	4 cut(s)	136, 157, 166, 370
EaeI	YGGCCR	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	515
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	520
EcoRII	CCWGG	2 cut(s)	102, 519
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	7 cut(s)	59, 71, 132, 349, 359, 502, 546
FalI	AAGNNNNNCTT	4 cut(s)	467, 499, 581, 613
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	7 cut(s)	55, 67, 128, 345, 355, 498, 542
FauNDI	CATATG	1 cut(s)	507
Fnu4HI	GCNGC	2 cut(s)	339, 452
FokI	GGATG	2 cut(s)	197, 398
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	2 cut(s)	339, 452
FspBI	CTAG	2 cut(s)	462, 605
GluI	GCNGC	2 cut(s)	339, 452
HaeIII	GGCC	1 cut(s)	326
HgaI	GACGC	1 cut(s)	454
Hin1II	CATG	7 cut(s)	59, 71, 132, 349, 359, 502, 546
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	2 cut(s)	166, 237
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	1 cut(s)	429
HpyCH4III	ACNGT	2 cut(s)	178, 266
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	4 cut(s)	132, 269, 293, 341
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	417
Hsp92II	CATG	7 cut(s)	59, 71, 132, 349, 359, 502, 546
Kzo9I	GATC	4 cut(s)	136, 157, 166, 370
LmnI	GCTCC	1 cut(s)	71
Lsp1109I	GCAGC	2 cut(s)	325, 463
LweI	GCATC	2 cut(s)	119, 280
MaeI	CTAG	2 cut(s)	462, 605
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	4 cut(s)	138, 159, 168, 372
MboI	GATC	4 cut(s)	136, 157, 166, 370
MboII	GAAGA	2 cut(s)	203, 563
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	515
MlsI	TGGCCA	1 cut(s)	326
MluCI	AATT	2 cut(s)	90, 471
MluNI	TGGCCA	1 cut(s)	326
MmeI	TCCRAC	2 cut(s)	238, 482
MnlI	CCTC	7 cut(s)	191, 216, 235, 243, 266, 465, 612
Mox20I	TGGCCA	1 cut(s)	326
Mph1103I	ATGCAT	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	326
MseI	TTAA	3 cut(s)	350, 474, 581
MslI	CAYNNNNRTG	1 cut(s)	332
Msp20I	TGGCCA	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	104, 521
MvaI	CCWGG	2 cut(s)	104, 521
NcoI	CCATGG	1 cut(s)	55
NdeI	CATATG	1 cut(s)	507
NdeII	GATC	4 cut(s)	136, 157, 166, 370
NlaIII	CATG	7 cut(s)	59, 71, 132, 349, 359, 502, 546
NlaIV	GGNNCC	2 cut(s)	444, 491
NsiI	ATGCAT	1 cut(s)	134
NspI	RCATGY	3 cut(s)	132, 349, 546
NspV	TTCGAA	1 cut(s)	189
PciI	ACATGT	2 cut(s)	345, 542
PdmI	GAANNNNTTC	1 cut(s)	533
PfoI	TCCNGGA	1 cut(s)	102
PkrI	GCNGC	2 cut(s)	340, 453
PscI	ACATGT	2 cut(s)	345, 542
Psp6I	CCWGG	2 cut(s)	102, 519
PspGI	CCWGG	2 cut(s)	102, 519
PspN4I	GGNNCC	2 cut(s)	444, 491
PspPI	GGNCC	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	3 cut(s)	86, 393, 541
RsaNI	GTAC	3 cut(s)	85, 392, 540
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	350, 474, 581
SatI	GCNGC	2 cut(s)	339, 452
Sau3AI	GATC	4 cut(s)	136, 157, 166, 370
Sau96I	GGNCC	1 cut(s)	443
ScrFI	CCNGG	2 cut(s)	104, 521
SduI	GDGCHC	1 cut(s)	515
SetI	ASST	9 cut(s)	76, 148, 249, 277, 284, 305, 397, 420, 525
SfaNI	GCATC	2 cut(s)	119, 280
SfcI	CTRYAG	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	332
Sse9I	AATT	2 cut(s)	90, 471
SspMI	CTAG	2 cut(s)	462, 605
StyD4I	CCNGG	2 cut(s)	102, 519
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	178, 266
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	2 cut(s)	189, 574
TasI	AATT	2 cut(s)	90, 471
TatI	WGTACW	1 cut(s)	539
Tru1I	TTAA	3 cut(s)	350, 474, 581
Tru9I	TTAA	3 cut(s)	350, 474, 581
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	2 cut(s)	338, 451
TspDTI	ATGAA	3 cut(s)	17, 255, 542
TspRI	CASTG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	90
XceI	RCATGY	3 cut(s)	132, 349, 546
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	2 cut(s)	462, 605
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.