Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016296

Physical Location & Seq

Genomic Coordinates Reverse (-)

2995738 .. 2998106

Gene Structure 2369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G040000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTCAGGAGGAAGAGTGGAAGAAGAGAAAGAGCATACAAAGAGTGAAATGTTACCAACATACCCTCATCATCATCATCGGCAGCAGCATCATTTGGTTCTGATCCATGGCATAGGGCATGGAGCTTGGTGCTGGTACAAGATCAGGTGTCTCTTGGAAGCATCAGGCTACAAAGTGACATGCCTTGACCTAAAAGGTGCCGGTATTGACCAATCTGACCCTAACACCATCCTCACTTTCCAAGACTATAACAAGCCGCTCATTAACTTCTTGTCCAATTTGCCATTGGATGAAAAGGTAGTACTTGTGGGACACAGTGTAGGAGGCATGAGCTTGACGGATGCTATACACAGATTTGCTAACAAAATACATATGGCAATATATGTTGCAGCAACCATGTTAGAGCATGGATTTTCTACCCATCAAGATTTCAAAGATGGAAAGCCTGACTTATCTGCATTTGGAAACGTCGTCAAATTCATATATGGGTTGGGACCTGACCAGCCTCCAACTAGTGCCATAATGAAGGAGAATTTTCAGCACCAAATCTTGTATCAGATGAGCACTCTAGAGGACTCAACTTTAGCTTCAATGCTGCTGAGGCCAGGACCTGTGCTGGCATTGCAGGGTGCTCGATTTGAACGAACTGCGGATGCCGCTGATTGTGTGCCAAGAGTGTACATCAAGACCATGCAGGACCATGTTATAAAGCCAGAGCAACAAGATGCCATGATCAAGAGATGGCCACCATCCCAAGTCTTTGTTCTGGATAGTGATCATAGCCCATTTTTCTCCACACCCTTTGTGCTCTTTGGATTGTTGGTTAAAGCATTGGCTTCCATCAAATGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009683 GO:0009850 GO:0009987 GO:0010817 GO:0016787 GO:0016788 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033473 GO:0034641 GO:0034754 GO:0042430 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0046483 GO:0048367 GO:0048731 GO:0048856 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

285

Amino Acids

31.82

Weight (kDa)

6.62

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40710 FvH4_3g40710
malus_domestica	MD03G1050200.v1.1 MD03G1050400.v1.1
prunus_persica	Prupe.6G040000_v2.0.a1 Prupe.6G040000_v2.0.a1 Prupe.6G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073501
rosa_multiflora	Rmu_ssc0000226.1_g000015
rosa_rugosa	Rorug05G0423900 Rorug05G0424000
rosa_samantha	Rh5AG481300 Rh5BG502000 Rh5CG525200
rosa_wichuraiana	Rw5G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
AccB1I	GGYRCC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	259
AciI	CCGC	3 cut(s)	257, 650, 657
AclWI	GGATC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	743
AcsI	RAATTY	2 cut(s)	476, 532
AfaI	GTAC	3 cut(s)	137, 303, 680
AgsI	TTSAA	3 cut(s)	433, 591, 641
AhlI	ACTAGT	1 cut(s)	512
AjnI	CCWGG	1 cut(s)	604
AjuI	GAANNNNNNNTTGG	2 cut(s)	747, 779
AluBI	AGCT	3 cut(s)	125, 333, 587
AluI	AGCT	3 cut(s)	125, 333, 587
Alw21I	GWGCWC	3 cut(s)	566, 634, 810
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	1 cut(s)	97
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	2 cut(s)	602, 743
ApeKI	GCWGC	4 cut(s)	82, 85, 389, 595
ApoI	RAATTY	2 cut(s)	476, 532
AspS9I	GGNCC	3 cut(s)	494, 608, 697
AvaII	GGWCC	3 cut(s)	494, 608, 697
BalI	TGGCCA	1 cut(s)	745
BanI	GGYRCC	1 cut(s)	197
Bbv12I	GWGCWC	3 cut(s)	566, 634, 810
BbvCI	CCTCAGC	1 cut(s)	599
BbvI	GCAGC	4 cut(s)	94, 97, 401, 582
BccI	CCATC	6 cut(s)	236, 429, 431, 735, 757, 848
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	1 cut(s)	606
BclI	TGATCA	2 cut(s)	732, 775
BcoDI	GTCTC	1 cut(s)	155
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	2 cut(s)	513, 569
BisI	GCNGC	6 cut(s)	83, 86, 257, 390, 596, 657
BlsI	GCNGC	6 cut(s)	84, 87, 258, 391, 597, 658
BmcAI	AGTACT	1 cut(s)	303
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	3 cut(s)	494, 608, 697
BmgT120I	GGNCC	3 cut(s)	494, 608, 697
BmiI	GGNNCC	2 cut(s)	199, 495
BmrFI	CCNGG	1 cut(s)	606
BmsI	GCATC	5 cut(s)	97, 170, 331, 643, 715
Bpu10I	CCTNAGC	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	774
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bse118I	RCCGGY	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	620
Bse8I	GATNNNNATC	1 cut(s)	774
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	5 cut(s)	228, 295, 346, 658, 749
BseJI	GATNNNNATC	1 cut(s)	774
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	1 cut(s)	590
BseXI	GCAGC	4 cut(s)	94, 97, 401, 582
BshFI	GGCC	2 cut(s)	604, 745
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	3 cut(s)	566, 634, 810
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	2 cut(s)	324, 507
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	324, 507
BsnI	GGCC	2 cut(s)	604, 745
Bsp1286I	GDGCHC	3 cut(s)	566, 634, 810
Bsp1407I	TGTACA	1 cut(s)	678
Bsp143I	GATC	4 cut(s)	102, 141, 732, 775
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	3 cut(s)	257, 650, 657
BspANI	GGCC	2 cut(s)	604, 745
BspCNI	CTCAG	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	199, 495
BspPI	GGATC	1 cut(s)	97
BspT107I	GGYRCC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	620
BsrFI	RCCGGY	1 cut(s)	200
BsrGI	TGTACA	1 cut(s)	678
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	4 cut(s)	102, 141, 732, 775
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	2 cut(s)	7, 18
BstAUI	TGTACA	1 cut(s)	678
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	1 cut(s)	599
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	5 cut(s)	228, 295, 346, 658, 749
BstKTI	GATC	4 cut(s)	105, 144, 735, 778
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	4 cut(s)	102, 141, 732, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	601, 622, 656
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	604
BstV1I	GCAGC	4 cut(s)	94, 97, 401, 582
BsuRI	GGCC	2 cut(s)	604, 745
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	5 cut(s)	228, 295, 346, 658, 749
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	618
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	494, 608, 697
Csp6I	GTAC	3 cut(s)	136, 302, 679
CspCI	CAANNNNNGTGG	2 cut(s)	784, 819
CviAII	CATG	9 cut(s)	107, 119, 180, 328, 397, 407, 691, 701, 730
CviQI	GTAC	3 cut(s)	136, 302, 679
DdeI	CTNAG	1 cut(s)	599
DpnI	GATC	4 cut(s)	104, 143, 734, 777
DpnII	GATC	4 cut(s)	102, 141, 732, 775
EaeI	YGGCCR	1 cut(s)	743
Eam1104I	CTCTTC	2 cut(s)	7, 18
EarI	CTCTTC	2 cut(s)	7, 18
Eco130I	CCWWGG	1 cut(s)	106
Eco47I	GGWCC	3 cut(s)	494, 608, 697
EcoO109I	RGGNCCY	2 cut(s)	494, 608
EcoRII	CCWGG	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	9 cut(s)	110, 122, 183, 331, 400, 410, 694, 704, 733
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	2 cut(s)	324, 507
FatI	CATG	9 cut(s)	106, 118, 179, 327, 396, 406, 690, 700, 729
FauNDI	CATATG	1 cut(s)	372
FbaI	TGATCA	2 cut(s)	732, 775
Fnu4HI	GCNGC	6 cut(s)	83, 86, 257, 390, 596, 657
FokI	GGATG	5 cut(s)	215, 302, 353, 665, 736
Fsp4HI	GCNGC	6 cut(s)	83, 86, 257, 390, 596, 657
FspBI	CTAG	2 cut(s)	513, 569
GluI	GCNGC	6 cut(s)	83, 86, 257, 390, 596, 657
HaeIII	GGCC	2 cut(s)	604, 745
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	9 cut(s)	110, 122, 183, 331, 400, 410, 694, 704, 733
HinfI	GANTC	1 cut(s)	575
HpaII	CCGG	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	3 cut(s)	102, 217, 558
Hpy188III	TCNNGA	6 cut(s)	6, 425, 569, 685, 736, 767
Hpy8I	GTNNAC	1 cut(s)	679
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	1 cut(s)	520
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	4 cut(s)	389, 458, 625, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	601, 622, 656
HpyF3I	CTNAG	1 cut(s)	599
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	9 cut(s)	110, 122, 183, 331, 400, 410, 694, 704, 733
Ksp22I	TGATCA	2 cut(s)	732, 775
Kzo9I	GATC	4 cut(s)	102, 141, 732, 775
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	4 cut(s)	94, 97, 401, 582
LweI	GCATC	5 cut(s)	97, 170, 331, 643, 715
MaeI	CTAG	2 cut(s)	513, 569
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	2 cut(s)	51, 175
MalI	GATC	4 cut(s)	104, 143, 734, 777
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	4 cut(s)	102, 141, 732, 775
MboII	GAAGA	3 cut(s)	24, 32, 35
MhlI	GDGCHC	3 cut(s)	566, 634, 810
MlsI	TGGCCA	1 cut(s)	745
MluCI	AATT	3 cut(s)	277, 476, 532
MluNI	TGGCCA	1 cut(s)	745
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	533
MnlI	CCTC	6 cut(s)	75, 242, 317, 516, 565, 594
Mox20I	TGGCCA	1 cut(s)	745
MscI	TGGCCA	1 cut(s)	745
MseI	TTAA	3 cut(s)	264, 825, 853
Msp20I	TGGCCA	1 cut(s)	745
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	606
MvaI	CCWGG	1 cut(s)	606
MwoI	GCNNNNNNNGC	3 cut(s)	601, 622, 656
NcoI	CCATGG	1 cut(s)	106
NdeI	CATATG	1 cut(s)	372
NdeII	GATC	4 cut(s)	102, 141, 732, 775
NlaIII	CATG	9 cut(s)	110, 122, 183, 331, 400, 410, 694, 704, 733
NlaIV	GGNNCC	2 cut(s)	199, 495
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	640
PkrI	GCNGC	6 cut(s)	84, 87, 258, 391, 597, 658
PleI	GAGTC	1 cut(s)	569
PpsI	GAGTC	1 cut(s)	569
PpuMI	RGGWCCY	2 cut(s)	494, 608
PsiI	TTATAA	1 cut(s)	707
Psp5II	RGGWCCY	2 cut(s)	494, 608
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	2 cut(s)	199, 495
PspPI	GGNCC	3 cut(s)	494, 608, 697
PspPPI	RGGWCCY	2 cut(s)	494, 608
PstNI	CAGNNNCTG	1 cut(s)	611
RsaI	GTAC	3 cut(s)	137, 303, 680
RsaNI	GTAC	3 cut(s)	136, 302, 679
SaqAI	TTAA	3 cut(s)	264, 825, 853
SatI	GCNGC	6 cut(s)	83, 86, 257, 390, 596, 657
Sau3AI	GATC	4 cut(s)	102, 141, 732, 775
Sau96I	GGNCC	3 cut(s)	494, 608, 697
ScaI	AGTACT	1 cut(s)	303
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	3 cut(s)	566, 634, 810
SfaNI	GCATC	5 cut(s)	97, 170, 331, 643, 715
SinI	GGWCC	3 cut(s)	494, 608, 697
SpeI	ACTAGT	1 cut(s)	512
Sse9I	AATT	3 cut(s)	277, 476, 532
SsiI	CCGC	3 cut(s)	257, 650, 657
SspMI	CTAG	2 cut(s)	513, 569
StyD4I	CCNGG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	1 cut(s)	634
TasI	AATT	3 cut(s)	277, 476, 532
TatI	WGTACW	2 cut(s)	301, 678
TauI	GCSGC	2 cut(s)	259, 659
Tru1I	TTAA	3 cut(s)	264, 825, 853
Tru9I	TTAA	3 cut(s)	264, 825, 853
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	4 cut(s)	82, 85, 389, 595
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	306, 469, 539
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	3 cut(s)	494, 608, 697
XapI	RAATTY	2 cut(s)	476, 532
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	1 cut(s)	183
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XspI	CTAG	2 cut(s)	513, 569
ZrmI	AGTACT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.