Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016296

Physical Location & Seq

Genomic Coordinates Forward (+)

58929129 .. 58929894

Gene Structure 766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0423900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTTCTTCTAAGCAGGTTCAGGTCACAGCTTGTATTCTATGGCTTCTGTTCCTCACACTTCCATGTTCTTCTTCCACTGAATCACTCTATCAGCATTCTTTGGTTGTTGGTGAAAATGCTACTTTAGGATTGTCTCATGATATGCCAGTCGGAAAATCTCCCGGTTCTAAGCCTGGCGCTTCGGTGTTGTGTGAACTGAAGGTGAAGATATCAACAACATCAAGATTTCAGACTTTTGAGGTTTGTTTCCATAGAAATACGTCCCGTGGGATAGGAATGTGCCCTGACAGCCAGTGGGAGAAAGTTTCCAAGGGGTCCTGGTCTGGGTCCATGTCACCTTTTGAGCACAAACTCTTGGATATACGAACAGCTGGTTCATCCTTACAGAATTTTGAAGTGTTCATTAACGAAGAATTTTTCTTATCTCGCTTAATATTTTTTGTATCTGGCATAGTCCTGACTCCTGATGACCTTGGCGCCTTATCTGAGCAACTCATTAGTGTTTTATTACAGCAGCGGAATGGCAATAGGGGTGGTAATGAAGCTTCTCCCAACTGGTCTGAAGAATTCACTTGCAATTTTCGTCTTGTCATCTGTGGTTGGTTTGGGATCTTTTCTCCTCCGCTACATCCCAGGACTACTAAGTTCAGTACTCACAGAGCTTGGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009683 GO:0009850 GO:0009987 GO:0010817 GO:0016787 GO:0016788 GO:0019752 GO:0032501 GO:0032502 GO:0032787 GO:0033473 GO:0034641 GO:0034754 GO:0042430 GO:0042445 GO:0043436 GO:0044237 GO:0044281 GO:0046483 GO:0048367 GO:0048731 GO:0048856 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0080030 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

224

Amino Acids

24.86

Weight (kDa)

7.63

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016296)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g40710 FvH4_3g40710
malus_domestica	MD03G1050200.v1.1 MD03G1050400.v1.1
prunus_persica	Prupe.6G040000_v2.0.a1 Prupe.6G040000_v2.0.a1 Prupe.6G040000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073501
rosa_multiflora	Rmu_ssc0000226.1_g000015
rosa_rugosa	Rorug05G0423900 Rorug05G0424000
rosa_samantha	Rh5AG481300 Rh5BG502000 Rh5CG525200
rosa_wichuraiana	Rw5G044710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	7
AccB1I	GGYRCC	1 cut(s)	479
AciI	CCGC	2 cut(s)	520, 626
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	3 cut(s)	391, 416, 569
AcuI	CTGAAG	2 cut(s)	221, 585
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	1 cut(s)	398
AjnI	CCWGG	3 cut(s)	175, 320, 635
AluBI	AGCT	4 cut(s)	32, 374, 548, 665
AluI	AGCT	4 cut(s)	32, 374, 548, 665
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	620
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	3 cut(s)	391, 416, 569
AspLEI	GCGC	2 cut(s)	182, 482
AspS9I	GGNCC	2 cut(s)	318, 330
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	125, 217, 330
AvaII	GGWCC	2 cut(s)	318, 330
BaeGI	GKGCMC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	479
BarI	GAAGNNNNNNTAC	2 cut(s)	532, 564
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	529
BciT130I	CCWGG	3 cut(s)	177, 322, 637
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	141
BfoI	RGCGCY	2 cut(s)	183, 483
BfuAI	ACCTGC	1 cut(s)	7
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
BmcAI	AGTACT	1 cut(s)	655
Bme1390I	CCNGG	4 cut(s)	165, 177, 322, 637
Bme18I	GGWCC	2 cut(s)	318, 330
BmgT120I	GGNCC	2 cut(s)	318, 330
BmiI	GGNNCC	3 cut(s)	319, 331, 481
BmrFI	CCNGG	4 cut(s)	165, 177, 322, 637
BpuMI	CCSGG	1 cut(s)	165
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	4 cut(s)	268, 312, 475, 635
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse1I	ACTGG	3 cut(s)	149, 295, 563
BseBI	CCWGG	3 cut(s)	177, 322, 637
BseDI	CCNNGG	4 cut(s)	268, 312, 475, 635
BseGI	GGATG	2 cut(s)	380, 631
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	3 cut(s)	149, 295, 563
BseRI	GAGGAG	1 cut(s)	612
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	1 cut(s)	529
BshNI	GGYRCC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	287, 351
Bsp143I	GATC	1 cut(s)	612
BspACI	CCGC	2 cut(s)	520, 626
BspCNI	CTCAG	1 cut(s)	481
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	319, 331, 481
BspMI	ACCTGC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	620
BspT107I	GGYRCC	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	149, 295, 563
BssECI	CCNNGG	4 cut(s)	268, 312, 475, 635
BssMI	GATC	1 cut(s)	612
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	312, 475
Bst2UI	CCWGG	3 cut(s)	177, 322, 637
BstACI	GRCGYC	1 cut(s)	480
BstDEI	CTNAG	4 cut(s)	12, 171, 489, 645
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	380, 631
BstH2I	RGCGCY	2 cut(s)	183, 483
BstHHI	GCGC	2 cut(s)	182, 482
BstKTI	GATC	1 cut(s)	615
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	1 cut(s)	612
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	3 cut(s)	177, 322, 637
BstSCI	CCNGG	4 cut(s)	163, 175, 320, 635
BstSLI	GKGCMC	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	612
BstYI	RGATCY	1 cut(s)	612
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	380, 631
BtsIMutI	CAGTG	2 cut(s)	78, 302
BveI	ACCTGC	1 cut(s)	7
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	2 cut(s)	182, 482
Cfr13I	GGNCC	2 cut(s)	318, 330
Csp6I	GTAC	1 cut(s)	654
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviAII	CATG	3 cut(s)	66, 140, 334
CviJI	RGCY	8 cut(s)	5, 32, 46, 175, 294, 374, 548, 665
CviKI_1	RGCY	8 cut(s)	5, 32, 46, 175, 294, 374, 548, 665
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	4 cut(s)	12, 171, 489, 645
DinI	GGCGCC	1 cut(s)	481
DpnI	GATC	1 cut(s)	614
DpnII	GATC	1 cut(s)	612
Eco130I	CCWWGG	2 cut(s)	312, 475
Eco32I	GATATC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	318, 330
Eco57I	CTGAAG	2 cut(s)	221, 585
EcoO109I	RGGNCCY	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	569
EcoRII	CCWGG	3 cut(s)	175, 320, 635
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	312, 475
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	312, 475
FaeI	CATG	3 cut(s)	69, 143, 337
FaiI	YATR	8 cut(s)	43, 67, 141, 146, 255, 335, 365, 455
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	3 cut(s)	65, 139, 333
Fnu4HI	GCNGC	1 cut(s)	518
FokI	GGATG	2 cut(s)	367, 618
Fsp4HI	GCNGC	1 cut(s)	518
GlaI	GCGC	2 cut(s)	181, 481
GluI	GCNGC	1 cut(s)	518
HaeII	RGCGCY	2 cut(s)	183, 483
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	2 cut(s)	182, 482
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	69, 143, 337
Hin6I	GCGC	2 cut(s)	180, 480
HinP1I	GCGC	2 cut(s)	180, 480
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	2 cut(s)	83, 463
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	3 cut(s)	125, 217, 330
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	4 cut(s)	155, 234, 490, 565
Hpy188III	TCNNGA	4 cut(s)	140, 225, 460, 467
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	263
HpyCH4V	TGCA	1 cut(s)	579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	4 cut(s)	12, 171, 489, 645
HpySE526I	ACGT	1 cut(s)	263
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	69, 143, 337
HspAI	GCGC	2 cut(s)	180, 480
KasI	GGCGCC	1 cut(s)	479
Kzo9I	GATC	1 cut(s)	612
Lsp1109I	GCAGC	1 cut(s)	529
MaeII	ACGT	1 cut(s)	263
MaeIII	GTNAC	2 cut(s)	25, 336
MalI	GATC	1 cut(s)	614
MboI	GATC	1 cut(s)	612
MboII	GAAGA	5 cut(s)	63, 66, 220, 425, 578
MflI	RGATCY	1 cut(s)	612
MhlI	GDGCHC	2 cut(s)	287, 351
MluCI	AATT	5 cut(s)	391, 416, 569, 580, 670
Mly113I	GGCGCC	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	3 cut(s)	65, 235, 633
MseI	TTAA	2 cut(s)	408, 434
MslI	CAYNNNNRTG	1 cut(s)	64
MspA1I	CMGCKG	2 cut(s)	374, 520
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	4 cut(s)	165, 177, 322, 637
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	3 cut(s)	177, 322, 637
MwoI	GCNNNNNNNGC	1 cut(s)	291
NarI	GGCGCC	1 cut(s)	480
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	612
NlaIII	CATG	3 cut(s)	69, 143, 337
NlaIV	GGNNCC	3 cut(s)	319, 331, 481
NmuCI	GTSAC	2 cut(s)	25, 336
PagI	TCATGA	1 cut(s)	139
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	519
PleI	GAGTC	1 cut(s)	457
PluTI	GGCGCC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	318
Psp6I	CCWGG	3 cut(s)	175, 320, 635
PspGI	CCWGG	3 cut(s)	175, 320, 635
PspN4I	GGNNCC	3 cut(s)	319, 331, 481
PspPI	GGNCC	2 cut(s)	318, 330
PspPPI	RGGWCCY	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	612
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	408, 434
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	1 cut(s)	612
Sau96I	GGNCC	2 cut(s)	318, 330
ScaI	AGTACT	1 cut(s)	655
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	4 cut(s)	165, 177, 322, 637
SduI	GDGCHC	2 cut(s)	287, 351
SfoI	GGCGCC	1 cut(s)	481
SinI	GGWCC	2 cut(s)	318, 330
SmiMI	CAYNNNNRTG	1 cut(s)	64
Sse9I	AATT	5 cut(s)	391, 416, 569, 580, 670
SsiI	CCGC	2 cut(s)	520, 626
SspDI	GGCGCC	1 cut(s)	479
SspI	AATATT	1 cut(s)	438
StyD4I	CCNGG	4 cut(s)	163, 175, 320, 635
StyI	CCWWGG	2 cut(s)	312, 475
TaiI	ACGT	1 cut(s)	266
TasI	AATT	5 cut(s)	391, 416, 569, 580, 670
TatI	WGTACW	1 cut(s)	653
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	408, 434
Tru9I	TTAA	2 cut(s)	408, 434
TscAI	CASTG	2 cut(s)	85, 302
TseFI	GTSAC	2 cut(s)	25, 336
TseI	GCWGC	1 cut(s)	517
Tsp45I	GTSAC	2 cut(s)	25, 336
TspDTI	ATGAA	3 cut(s)	369, 394, 558
TspRI	CASTG	2 cut(s)	85, 302
VpaK11BI	GGWCC	2 cut(s)	318, 330
XapI	RAATTY	3 cut(s)	391, 416, 569
ZrmI	AGTACT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.