Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012546

Physical Location & Seq

Genomic Coordinates Reverse (-)

64030 .. 67960

Gene Structure 3931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00080.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGTGGGCATTCCTAATGATATGCTGGCATCTCTAGCCTCCAGCGTTAAGGCAGCTGAGAAGTGGGTTTCCAAAAATGTCTCAGCACACATCTCCTCCAATAATGTCAAGATCAGGTATGTTGCAGTTGGAAATGAACCTTTCTTGGAAACATATAATGGTAGCTTCCTCAGGACAATCTTCCCCGCTCTTAAGAATGTTCAGTCAGCCCTCATAAAAGCTGGAATTAGTAACCAAGTAAAGGTGACTGTACCCCAAAATGCTGACGTTTATGAGAGTTCCAATGGGTTGCCATCTGGTGGTGACTTCCGAACTGAGATCCATGATCTAATGCTTCAAATTATCAAGTTCTTGAGTGACAATGGTGCCCCTTTCACGGTGAACATCTACCCGTTTATCAGCCTTTACATCGATGCCAATTTTCCAGTTGATTATGCATTCTTTGATGGCAATGCATCACCTATTACAGATGGCAGTTTAACCTATTACAATATGTTTGACGCGAATTATGACACTCTAGCATGGGCCCTGCAAAAGAATGGTTTTGGAAACTTACCAATTATAGTTGGAGAGATTGGATGGCCAACTGATGGAGACCAGAACGCTAATCTAGTTTATGCTCAGAAGTTCAACCAAGGTTTCATGTCCCACATTTTGAGTGGGAGAGGAACTCCAATGAGACCAGGGCCGATTGATGCATATTTATTCAGTTTAATCGATGAGGATTCAAAGAGCATTGATCCAGGAAATTTTGAACGACATTGGGGAATCTTCACTTTTGATGGAATACCAAAATACCAGCTTAATCTTGGTACAACAAATTCAGGGTCTGTAGTAGCGGCGAAAGGGGTGCACTATTTGGAGCGTAAGTGGTGTGTGATGAGGCCATCAGCGAGCCTCGATGACCCACAAGTGGCACTCAGCATGAGCTATGCTTGCGGACTTGCGGATTGCACAAGCCTTGGTTATGGTACATCTTGTGGAAACTTGGATGCTAGAGGAAACATTTCGTACGCATTTAATAGTTACTATCAGATGAACAATCAACTGGACGTTGCTTGCAAGTTCCCAAACCTCTCAATGATCACCAAAACAAATCCATCAGTTGGATCATGCAGGTTTGAGATAATGATCGAACCATATTATGGAGGTGCAGGCTCAGAAAGGAGGCTTGGAATTCTCCAAAGGCCTCTGAGCCTGGCTGCGGTTCTTATTCTCGTTTGGCAAAGTATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

413

Amino Acids

45.13

Weight (kDa)

5.42

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 347	4e-66	Glycosyl hydrolases family 17
X8	PF07983	368 - 437	2.1e-14	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58090
fragaria_vesca	FvH4_4g00080 FvH4_4g00080 FvH4_4g00080 FvH4_4g00080
malus_domestica	MD04G1001100.v1.1
prunus_persica	Prupe.1G001100_v2.0.a1
pyrus_communis	pycom04g00170
rosa_laevigata	RLG00000010278
rosa_multiflora	Rmu_co8514003.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332690
rosa_rugosa	Rorug03G0297000 Rorug03G0297100 Rorug03G0297100
rosa_samantha	Rh4AG000600 Rh4BG000500 Rh4CG000400 Rh4DG000300
rosa_wichuraiana	Rw4G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1107
AccB1I	GGYRCC	1 cut(s)	365
AccB7I	CCANNNNNTGG	4 cut(s)	299, 590, 1106, 1145
AccBSI	CCGCTC	1 cut(s)	188
AccII	CGCG	1 cut(s)	503
AciI	CCGC	5 cut(s)	186, 839, 939, 947, 1205
AclWI	GGATC	3 cut(s)	313, 734, 1117
AcoI	YGGCCR	1 cut(s)	581
AcsI	RAATTY	3 cut(s)	748, 820, 1176
AfaI	GTAC	4 cut(s)	252, 814, 973, 1013
AfiI	CCNNNNNNNGG	8 cut(s)	241, 299, 376, 590, 913, 1106, 1145, 1204
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	338, 631, 729, 755
AjnI	CCWGG	3 cut(s)	682, 742, 1197
AjuI	GAANNNNNNNTTGG	2 cut(s)	1155, 1187
AluBI	AGCT	5 cut(s)	56, 165, 221, 802, 930
AluI	AGCT	5 cut(s)	56, 165, 221, 802, 930
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	3 cut(s)	85, 588, 673
Alw44I	GTGCAC	1 cut(s)	851
AlwI	GGATC	3 cut(s)	313, 734, 1117
AlwNI	CAGNNNCTG	1 cut(s)	830
AoxI	GGCC	5 cut(s)	525, 581, 686, 884, 1187
ApaI	GGGCCC	1 cut(s)	529
ApaLI	GTGCAC	1 cut(s)	851
ApeKI	GCWGC	2 cut(s)	53, 1202
ApoI	RAATTY	3 cut(s)	748, 820, 1176
ArsI	GACNNNNNNTTYG	2 cut(s)	812, 844
Asp700I	GAANNNNTTC	1 cut(s)	1006
AspS9I	GGNCC	3 cut(s)	525, 526, 686
AsuHPI	GGTGA	5 cut(s)	256, 314, 391, 450, 1078
AxyI	CCTNAGG	1 cut(s)	170
BaeGI	GKGCMC	3 cut(s)	370, 529, 855
BalI	TGGCCA	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	2 cut(s)	65, 1189
BccI	CCATC	8 cut(s)	301, 440, 464, 573, 584, 776, 895, 1108
BcgI	CGANNNNNNTGC	2 cut(s)	832, 866
BciT130I	CCWGG	3 cut(s)	684, 744, 1199
BclI	TGATCA	1 cut(s)	1083
BcoDI	GTCTC	3 cut(s)	85, 588, 673
BfaI	CTAG	4 cut(s)	35, 518, 611, 996
BfmI	CTRYAG	1 cut(s)	831
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	1107
BisI	GCNGC	3 cut(s)	54, 840, 1203
BlsI	GCNGC	3 cut(s)	55, 841, 1204
Bme1390I	CCNGG	3 cut(s)	684, 744, 1199
BmgT120I	GGNCC	3 cut(s)	525, 526, 686
BmiI	GGNNCC	2 cut(s)	367, 527
BmrFI	CCNGG	3 cut(s)	684, 744, 1199
BmsI	GCATC	5 cut(s)	38, 403, 464, 685, 982
BplI	GAGNNNNNCTC	2 cut(s)	655, 687
BpmI	CTGGAG	1 cut(s)	25
BpuEI	CTTGAG	1 cut(s)	373
Bsa29I	ATCGAT	2 cut(s)	411, 717
BsaBI	GATNNNNATC	1 cut(s)	1130
BsaI	GGTCTC	2 cut(s)	588, 673
BsaJI	CCNNGG	3 cut(s)	634, 683, 961
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 854, 884
Bsc4I	CCNNNNNNNGG	8 cut(s)	241, 299, 376, 590, 913, 1106, 1145, 1204
Bse1I	ACTGG	2 cut(s)	425, 1053
Bse21I	CCTNAGG	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	1130
BseBI	CCWGG	3 cut(s)	684, 744, 1199
BseCI	ATCGAT	2 cut(s)	411, 717
BseDI	CCNNGG	3 cut(s)	634, 683, 961
BseGI	GGATG	2 cut(s)	584, 997
BseJI	GATNNNNATC	1 cut(s)	1130
BseLI	CCNNNNNNNGG	8 cut(s)	241, 299, 376, 590, 913, 1106, 1145, 1204
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	8 cut(s)	48, 96, 184, 306, 635, 934, 1173, 1184
BseNI	ACTGG	2 cut(s)	425, 1053
BseRI	GAGGAG	1 cut(s)	85
BseSI	GKGCMC	3 cut(s)	370, 529, 855
BseXI	GCAGC	2 cut(s)	65, 1189
BsgI	GTGCAG	1 cut(s)	1173
Bsh1236I	CGCG	1 cut(s)	503
BshFI	GGCC	5 cut(s)	527, 583, 688, 886, 1189
BshNI	GGYRCC	1 cut(s)	365
BshVI	ATCGAT	2 cut(s)	411, 717
BsiHKAI	GWGCWC	1 cut(s)	855
BsiWI	CGTACG	1 cut(s)	1011
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	8 cut(s)	241, 299, 376, 590, 913, 1106, 1145, 1204
BsmAI	GTCTC	3 cut(s)	85, 588, 673
BsmFI	GGGAC	1 cut(s)	631
BsmI	GAATGC	2 cut(s)	9, 437
BsnI	GGCC	5 cut(s)	527, 583, 688, 886, 1189
Bso31I	GGTCTC	2 cut(s)	588, 673
Bsp120I	GGGCCC	1 cut(s)	525
Bsp1286I	GDGCHC	3 cut(s)	370, 529, 855
Bsp143I	GATC	7 cut(s)	111, 318, 325, 739, 1083, 1109, 1131
BspACI	CCGC	5 cut(s)	186, 839, 939, 947, 1205
BspANI	GGCC	5 cut(s)	527, 583, 688, 886, 1189
BspCNI	CTCAG	8 cut(s)	49, 95, 183, 307, 634, 933, 1172, 1185
BspDI	ATCGAT	2 cut(s)	411, 717
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	2 cut(s)	367, 527
BspMI	ACCTGC	1 cut(s)	1107
BspPI	GGATC	3 cut(s)	313, 734, 1117
BspT107I	GGYRCC	1 cut(s)	365
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	2 cut(s)	588, 673
BsrBI	CCGCTC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	425, 1053
BssECI	CCNNGG	3 cut(s)	634, 683, 961
BssMI	GATC	7 cut(s)	111, 318, 325, 739, 1083, 1109, 1131
BssT1I	CCWWGG	2 cut(s)	634, 961
Bst2UI	CCWGG	3 cut(s)	684, 744, 1199
Bst4CI	ACNGT	2 cut(s)	250, 379
BstAFI	CTTAAG	1 cut(s)	191
BstC8I	GCNNGC	5 cut(s)	27, 895, 937, 1060, 1156
BstDEI	CTNAG	8 cut(s)	57, 82, 170, 315, 621, 920, 1159, 1193
BstF5I	GGATG	2 cut(s)	584, 997
BstFNI	CGCG	1 cut(s)	503
BstKTI	GATC	7 cut(s)	114, 321, 328, 742, 1086, 1112, 1134
BstMAI	GTCTC	3 cut(s)	85, 588, 673
BstMBI	GATC	7 cut(s)	111, 318, 325, 739, 1083, 1109, 1131
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 936
BstNI	CCWGG	3 cut(s)	684, 744, 1199
BstSCI	CCNGG	3 cut(s)	682, 742, 1197
BstSFI	CTRYAG	1 cut(s)	831
BstSLI	GKGCMC	3 cut(s)	370, 529, 855
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	2 cut(s)	65, 1189
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
Bsu15I	ATCGAT	2 cut(s)	411, 717
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	5 cut(s)	527, 583, 688, 886, 1189
BsuTUI	ATCGAT	2 cut(s)	411, 717
BtsCI	GGATG	2 cut(s)	584, 997
BveI	ACCTGC	1 cut(s)	1107
Cac8I	GCNNGC	5 cut(s)	27, 895, 937, 1060, 1156
CaiI	CAGNNNCTG	1 cut(s)	830
Cfr13I	GGNCC	3 cut(s)	525, 526, 686
ClaI	ATCGAT	2 cut(s)	411, 717
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	4 cut(s)	251, 813, 972, 1012
CviAII	CATG	6 cut(s)	323, 522, 643, 925, 1113, 1234
CviQI	GTAC	4 cut(s)	251, 813, 972, 1012
DdeI	CTNAG	8 cut(s)	57, 82, 170, 315, 621, 920, 1159, 1193
DpnI	GATC	7 cut(s)	113, 320, 327, 741, 1085, 1111, 1133
DpnII	GATC	7 cut(s)	111, 318, 325, 739, 1083, 1109, 1131
EaeI	YGGCCR	1 cut(s)	581
Eco130I	CCWWGG	2 cut(s)	634, 961
Eco147I	AGGCCT	1 cut(s)	1189
Eco24I	GRGCYC	1 cut(s)	529
Eco31I	GGTCTC	2 cut(s)	588, 673
Eco81I	CCTNAGG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRI	GAATTC	1 cut(s)	1176
EcoRII	CCWGG	3 cut(s)	682, 742, 1197
EcoT14I	CCWWGG	2 cut(s)	634, 961
EcoT22I	ATGCAT	3 cut(s)	439, 457, 700
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	2 cut(s)	634, 961
FaeI	CATG	6 cut(s)	326, 525, 646, 928, 1116, 1237
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	6 cut(s)	322, 521, 642, 924, 1112, 1233
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	1083
Fnu4HI	GCNGC	3 cut(s)	54, 840, 1203
FokI	GGATG	2 cut(s)	591, 1004
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	3 cut(s)	54, 840, 1203
FspBI	CTAG	4 cut(s)	35, 518, 611, 996
GluI	GCNGC	3 cut(s)	54, 840, 1203
GsuI	CTGGAG	1 cut(s)	25
HaeIII	GGCC	5 cut(s)	527, 583, 688, 886, 1189
HgaI	GACGC	1 cut(s)	509
Hin1II	CATG	6 cut(s)	326, 525, 646, 928, 1116, 1237
HinfI	GANTC	2 cut(s)	725, 768
HphI	GGTGA	5 cut(s)	256, 314, 391, 450, 1078
Hpy166II	GTNNAC	2 cut(s)	382, 853
Hpy188I	TCNGA	5 cut(s)	311, 624, 1035, 1162, 1194
Hpy188III	TCNNGA	3 cut(s)	109, 172, 352
Hpy8I	GTNNAC	2 cut(s)	382, 853
HpyCH4III	ACNGT	2 cut(s)	250, 379
HpyCH4IV	ACGT	2 cut(s)	267, 1053
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 936
HpyF3I	CTNAG	8 cut(s)	57, 82, 170, 315, 621, 920, 1159, 1193
HpySE526I	ACGT	2 cut(s)	267, 1053
Hsp92II	CATG	6 cut(s)	326, 525, 646, 928, 1116, 1237
Ksp22I	TGATCA	1 cut(s)	1083
Kzo9I	GATC	7 cut(s)	111, 318, 325, 739, 1083, 1109, 1131
LmnI	GCTCC	1 cut(s)	862
Lsp1109I	GCAGC	2 cut(s)	65, 1189
LweI	GCATC	5 cut(s)	38, 403, 464, 685, 982
MaeI	CTAG	4 cut(s)	35, 518, 611, 996
MaeII	ACGT	2 cut(s)	267, 1053
MaeIII	GTNAC	5 cut(s)	230, 244, 302, 356, 1025
MalI	GATC	7 cut(s)	113, 320, 327, 741, 1085, 1111, 1133
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	7 cut(s)	111, 318, 325, 739, 1083, 1109, 1131
MboII	GAAGA	2 cut(s)	172, 763
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	3 cut(s)	370, 529, 855
MlsI	TGGCCA	1 cut(s)	583
MluCI	AATT	8 cut(s)	225, 339, 418, 505, 558, 748, 820, 1176
MluNI	TGGCCA	1 cut(s)	583
MmeI	TCCRAC	3 cut(s)	109, 547, 1087
Mox20I	TGGCCA	1 cut(s)	583
Mph1103I	ATGCAT	3 cut(s)	439, 457, 700
MroXI	GAANNNNTTC	1 cut(s)	1006
MscI	TGGCCA	1 cut(s)	583
MseI	TTAA	6 cut(s)	48, 192, 479, 713, 804, 1020
Msp20I	TGGCCA	1 cut(s)	583
MspA1I	CMGCKG	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	191
MspR9I	CCNGG	3 cut(s)	684, 744, 1199
Mva1269I	GAATGC	2 cut(s)	9, 437
MvaI	CCWGG	3 cut(s)	684, 744, 1199
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	2 cut(s)	35, 936
NdeII	GATC	7 cut(s)	111, 318, 325, 739, 1083, 1109, 1131
NlaIII	CATG	6 cut(s)	326, 525, 646, 928, 1116, 1237
NlaIV	GGNNCC	2 cut(s)	367, 527
NmuCI	GTSAC	3 cut(s)	244, 302, 356
NsiI	ATGCAT	3 cut(s)	439, 457, 700
PceI	AGGCCT	1 cut(s)	1189
PctI	GAATGC	2 cut(s)	9, 437
PdmI	GAANNNNTTC	1 cut(s)	1006
PfeI	GAWTC	2 cut(s)	725, 768
Pfl23II	CGTACG	1 cut(s)	1011
PflMI	CCANNNNNTGG	4 cut(s)	299, 590, 1106, 1145
PfoI	TCCNGGA	1 cut(s)	742
PkrI	GCNGC	3 cut(s)	55, 841, 1204
Psp6I	CCWGG	3 cut(s)	682, 742, 1197
PspGI	CCWGG	3 cut(s)	682, 742, 1197
PspLI	CGTACG	1 cut(s)	1011
PspN4I	GGNNCC	2 cut(s)	367, 527
PspOMI	GGGCCC	1 cut(s)	525
PspPI	GGNCC	3 cut(s)	525, 526, 686
PstNI	CAGNNNCTG	1 cut(s)	830
PsuI	RGATCY	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	4 cut(s)	252, 814, 973, 1013
RsaNI	GTAC	4 cut(s)	251, 813, 972, 1012
SaqAI	TTAA	6 cut(s)	48, 192, 479, 713, 804, 1020
SatI	GCNGC	3 cut(s)	54, 840, 1203
Sau3AI	GATC	7 cut(s)	111, 318, 325, 739, 1083, 1109, 1131
Sau96I	GGNCC	3 cut(s)	525, 526, 686
ScrFI	CCNGG	3 cut(s)	684, 744, 1199
SduI	GDGCHC	3 cut(s)	370, 529, 855
SfaNI	GCATC	5 cut(s)	38, 403, 464, 685, 982
SfcI	CTRYAG	1 cut(s)	831
SmlI	CTYRAG	2 cut(s)	191, 352
SmoI	CTYRAG	2 cut(s)	191, 352
Sse9I	AATT	8 cut(s)	225, 339, 418, 505, 558, 748, 820, 1176
SseBI	AGGCCT	1 cut(s)	1189
SsiI	CCGC	5 cut(s)	186, 839, 939, 947, 1205
SspMI	CTAG	4 cut(s)	35, 518, 611, 996
StuI	AGGCCT	1 cut(s)	1189
StyD4I	CCNGG	3 cut(s)	682, 742, 1197
StyI	CCWWGG	2 cut(s)	634, 961
TaaI	ACNGT	2 cut(s)	250, 379
TaiI	ACGT	2 cut(s)	270, 1056
TaqI	TCGA	4 cut(s)	411, 717, 900, 1134
TasI	AATT	8 cut(s)	225, 339, 418, 505, 558, 748, 820, 1176
TauI	GCSGC	1 cut(s)	842
TfiI	GAWTC	2 cut(s)	725, 768
Tru1I	TTAA	6 cut(s)	48, 192, 479, 713, 804, 1020
Tru9I	TTAA	6 cut(s)	48, 192, 479, 713, 804, 1020
TseFI	GTSAC	3 cut(s)	244, 302, 356
TseI	GCWGC	2 cut(s)	53, 1202
Tsp45I	GTSAC	3 cut(s)	244, 302, 356
TspDTI	ATGAA	3 cut(s)	150, 631, 1052
Van91I	CCANNNNNTGG	4 cut(s)	299, 590, 1106, 1145
Vha464I	CTTAAG	1 cut(s)	191
VneI	GTGCAC	1 cut(s)	851
XapI	RAATTY	3 cut(s)	748, 820, 1176
XcmI	CCANNNNNNNNNTGG	2 cut(s)	656, 806
XmnI	GAANNNNTTC	1 cut(s)	1006
XspI	CTAG	4 cut(s)	35, 518, 611, 996
Zsp2I	ATGCAT	3 cut(s)	439, 457, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.