MD04G1001100.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
142870 .. 146508
3639 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1001100.v1.1.491

Sequence Viewer

Length: 1503 bp
ATGATGGGGATGATGAGGATGATAAGGGTGGCCTGTTTGGTAACAATGATAGTGGTGCTCATGTGGAGCAGCAGCACCAACACCAACAGCAGACTGAGAATGGTGAGAATGGTGAGCGGGATTGGAGCCAACTGGGGGACACAGGCATCCCACCCTCTCCCCCCAGACACCGTAGTCCGGCTTCTCAAAGACAACGGCTTTCAGCGGGTTAAGCTTTTCGATGCTGACTACGACACTCTCAACAGTCTCGCTAAGTCTGGCATTGAGGTCATGGTCGGCATTCCCAACGATATGCTCGCCTCTCTCGCCACCAGCGTCAAGGCTGCTGAGAAATGGGTTTCCAAGAACGTCTCTGCCCACATCTCCTCCAACAATGTCAAGATCAGGTATGTTGCTGTTGGAAATGAGCCTTTCTTGGAAACATACAACGGTAGCTTCCTCAGAACAACCTTCCCTGCACTGCAGAATGTCCAGTCTGCCCTGATAAAAGCTGGCCTTAGCAACCAAGTAAAGGTGACTGTACCCCAGAACGCTGACGTGTATGCGAGTTCAAATGGATTTCCATCCGGTGGTGACTTCCGAACTGATATCCATGATTACATGATTCAAATTGTGAAGTTCTTGAGTGACAATGGTTGCCCCTTCACCGTGAACATTTACCCATTTATAAGCCTTTACATTGACTCCAACTTCCCTGTTGATTATGCCTTCTTTGATGGCAATGCCTCACCTATTACTGATGGTAGTGCAACATACTACAATATGTTTGACGCAAACTATGATACTCTTGTGTGGACCCTGCAGAAGAATGGCTTTGGAAATTTACCAATCATAGTTGGAGAGATTGGATGGCCGACAGATGGCGACCGGAATGCTAATCTAGTTTATGCTCAGAGGTTCAACCAAGGTTTCATGTCCCACATATTGGGTGGCAGAGGAACCCCAATGAGACCAGGGCCAATTGATGCTTATCTGTTCAGTTTGATTGACGAGGATGCTAAAAGCATTGATCCAGGAAACTTTGAACGACACTGGGGAATATTTACCTTTGATGGGTTAGCAAAATACCAGCTTAACCTTGGTTCCACAAATTCAGGGGCATTAGTTCCAGCAAAAGGTGTGCACTATTTGGAGCGTAAGTGGTGCGTGATGAAGCCTTCAGCAAGCCTTGATGACCCACAAGTAGCACTAAGTGTGAGCTATGCCTGTGGACTTGCAGATTGTACTAGCCTTGGTTACGGGACATCTTGTGGAAACTTGGATGATCGAGCAAACATTTCGTATGCTGTTAACAGTTACTACCAGAGGAACAATCAACTTGATGAAGCTTGCAAGTTTCCAAACCTTTCAATGATCACCAAAACAAACCCATCTGTCGGATCATGCAGATTTGAGATAATGATCGAACCATATTACGGAGCTGCAGAAAGGAGATCCGGGCATCTCCAAAAACCTCTGAGCCTGGTTGCACTTTTCGCTTTCTTGATGCTAACACTTGTGTGA

Protein Analysis

501

Amino Acids

55.04

Weight (kDa)

6.39

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 41 - 359 3.7e-63 Glycosyl hydrolases family 17
X8 PF07983 380 - 449 1.3e-14 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012546)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
AasI GACNNNNNNGTC 1 cut(s) 173
AccB7I CCANNNNNTGG 2 cut(s) 569, 925
AccBSI CCGCTC 1 cut(s) 117
AciI CCGC 2 cut(s) 117, 205
AclWI GGATC 3 cut(s) 1004, 1387, 1428
AcoI YGGCCR 1 cut(s) 851
AcsI RAATTY 2 cut(s) 820, 1090
AcuI CTGAAG 1 cut(s) 1143
AdeI CACNNNGTG 1 cut(s) 1193
AfaI GTAC 2 cut(s) 522, 1225
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 5 cut(s) 552, 608, 901, 1025, 1350
AjiI CACGTC 1 cut(s) 538
AjnI CCWGG 3 cut(s) 952, 1012, 1461
AleI CACNNNNGTG 1 cut(s) 1498
AluBI AGCT 7 cut(s) 214, 435, 491, 1072, 1200, 1328, 1421
AluI AGCT 7 cut(s) 214, 435, 491, 1072, 1200, 1328, 1421
Alw21I GWGCWC 2 cut(s) 60, 1125
Alw26I GTCTC 3 cut(s) 251, 355, 943
Alw44I GTGCAC 1 cut(s) 1121
AlwI GGATC 3 cut(s) 1004, 1387, 1428
AoxI GGCC 4 cut(s) 30, 493, 851, 956
ApaLI GTGCAC 1 cut(s) 1121
ApeKI GCWGC 4 cut(s) 69, 72, 323, 1421
ApoI RAATTY 2 cut(s) 820, 1090
AspS9I GGNCC 2 cut(s) 795, 956
AsuC2I CCSGG 1 cut(s) 1438
AsuHPI GGTGA 7 cut(s) 115, 124, 526, 584, 637, 720, 1348
AvaII GGWCC 1 cut(s) 795
BaeGI GKGCMC 1 cut(s) 1125
BaeI ACNNNNGTAYC 2 cut(s) 774, 807
BarI GAAGNNNNNNTAC 2 cut(s) 165, 197
Bbv12I GWGCWC 2 cut(s) 60, 1125
BbvI GCAGC 4 cut(s) 81, 84, 310, 1408
BccI CCATC 7 cut(s) 571, 710, 734, 843, 854, 1046, 1378
BceAI ACGGC 1 cut(s) 211
BcgI CGANNNNNNTGC 4 cut(s) 854, 888, 1260, 1294
BciT130I CCWGG 3 cut(s) 954, 1014, 1463
BclI TGATCA 1 cut(s) 1353
BcnI CCSGG 1 cut(s) 1438
BcoDI GTCTC 3 cut(s) 251, 355, 943
BfaI CTAG 2 cut(s) 881, 1227
BfmI CTRYAG 3 cut(s) 461, 800, 1422
BisI GCNGC 4 cut(s) 70, 73, 324, 1422
BlsI GCNGC 4 cut(s) 71, 74, 325, 1423
Bme1390I CCNGG 4 cut(s) 954, 1014, 1438, 1463
Bme18I GGWCC 1 cut(s) 795
BmgBI CACGTC 1 cut(s) 538
BmgT120I GGNCC 2 cut(s) 795, 956
BmiI GGNNCC 4 cut(s) 127, 797, 940, 1084
BmrFI CCNGG 4 cut(s) 954, 1014, 1438, 1463
BmrI ACTGGG 2 cut(s) 142, 1042
BmsI GCATC 6 cut(s) 155, 211, 955, 985, 1450, 1476
BmuI ACTGGG 2 cut(s) 142, 1042
Bpu10I CCTNAGC 1 cut(s) 497
BpuEI CTTGAG 1 cut(s) 643
BpuMI CCSGG 1 cut(s) 1438
BsaBI GATNNNNATC 3 cut(s) 562, 969, 1400
BsaI GGTCTC 1 cut(s) 943
BsaJI CCNNGG 4 cut(s) 904, 953, 1078, 1231
BsaWI WCCGGW 2 cut(s) 566, 867
BsaXI ACNNNNNCTCC 6 cut(s) 350, 380, 668, 698, 1124, 1154
Bse1I ACTGG 3 cut(s) 137, 472, 1037
Bse3DI GCAATG 1 cut(s) 727
Bse8I GATNNNNATC 3 cut(s) 562, 969, 1400
BseBI CCWGG 3 cut(s) 954, 1014, 1463
BseDI CCNNGG 4 cut(s) 904, 953, 1078, 1231
BseGI GGATG 7 cut(s) 15, 24, 146, 563, 854, 1000, 1267
BseJI GATNNNNATC 3 cut(s) 562, 969, 1400
BseMI GCAATG 1 cut(s) 727
BseMII CTCAG 5 cut(s) 86, 318, 454, 905, 1448
BseNI ACTGG 3 cut(s) 137, 472, 1037
BseRI GAGGAG 1 cut(s) 355
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 4 cut(s) 81, 84, 310, 1408
BsgI GTGCAG 1 cut(s) 441
Bsh1285I CGRYCG 1 cut(s) 868
BshFI GGCC 4 cut(s) 32, 495, 853, 958
BsiEI CGRYCG 1 cut(s) 868
BsiHKAI GWGCWC 2 cut(s) 60, 1125
BsiSI CCGG 4 cut(s) 178, 567, 868, 1437
BslFI GGGAC 3 cut(s) 151, 901, 1255
BsmAI GTCTC 3 cut(s) 251, 355, 943
BsmBI CGTCTC 1 cut(s) 355
BsmFI GGGAC 3 cut(s) 151, 901, 1255
BsmI GAATGC 2 cut(s) 279, 877
BsnI GGCC 4 cut(s) 32, 495, 853, 958
Bso31I GGTCTC 1 cut(s) 943
Bsp1286I GDGCHC 2 cut(s) 60, 1125
Bsp143I GATC 7 cut(s) 381, 1009, 1264, 1353, 1379, 1401, 1433
BspACI CCGC 2 cut(s) 117, 205
BspANI GGCC 4 cut(s) 32, 495, 853, 958
BspCNI CTCAG 5 cut(s) 87, 319, 453, 904, 1449
BspLI GGNNCC 4 cut(s) 127, 797, 940, 1084
BspMAI CTGCAG 3 cut(s) 465, 804, 1426
BspPI GGATC 3 cut(s) 1004, 1387, 1428
BspTNI GGTCTC 1 cut(s) 943
BsrBI CCGCTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 727
BsrI ACTGG 3 cut(s) 137, 472, 1037
BssECI CCNNGG 4 cut(s) 904, 953, 1078, 1231
BssMI GATC 7 cut(s) 381, 1009, 1264, 1353, 1379, 1401, 1433
BssT1I CCWWGG 3 cut(s) 904, 1078, 1231
Bst2UI CCWGG 3 cut(s) 954, 1014, 1463
Bst4CI ACNGT 6 cut(s) 172, 245, 431, 520, 649, 1295
BstC8I GCNNGC 4 cut(s) 297, 493, 1165, 1330
BstDEI CTNAG 8 cut(s) 95, 252, 327, 440, 497, 891, 1190, 1457
BstF5I GGATG 7 cut(s) 15, 24, 146, 563, 854, 1000, 1267
BstKTI GATC 7 cut(s) 384, 1012, 1267, 1356, 1382, 1404, 1436
BstMAI GTCTC 3 cut(s) 251, 355, 943
BstMBI GATC 7 cut(s) 381, 1009, 1264, 1353, 1379, 1401, 1433
BstMCI CGRYCG 1 cut(s) 868
BstMWI GCNNNNNNNGC 3 cut(s) 211, 305, 1475
BstNI CCWGG 3 cut(s) 954, 1014, 1463
BstSCI CCNGG 4 cut(s) 952, 1012, 1436, 1461
BstSFI CTRYAG 3 cut(s) 461, 800, 1422
BstSLI GKGCMC 1 cut(s) 1125
BstV1I GCAGC 4 cut(s) 81, 84, 310, 1408
BstX2I RGATCY 1 cut(s) 1433
BstYI RGATCY 1 cut(s) 1433
BsuRI GGCC 4 cut(s) 32, 495, 853, 958
BtrI CACGTC 1 cut(s) 538
BtsCI GGATG 7 cut(s) 15, 24, 146, 563, 854, 1000, 1267
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 2 cut(s) 458, 1030
Cac8I GCNNGC 4 cut(s) 297, 493, 1165, 1330
Cfr13I GGNCC 2 cut(s) 795, 956
CseI GACGC 2 cut(s) 304, 779
Csp6I GTAC 2 cut(s) 521, 1224
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviAII CATG 6 cut(s) 61, 271, 593, 601, 913, 1383
CviQI GTAC 2 cut(s) 521, 1224
DdeI CTNAG 8 cut(s) 95, 252, 327, 440, 497, 891, 1190, 1457
DpnI GATC 7 cut(s) 383, 1011, 1266, 1355, 1381, 1403, 1435
DpnII GATC 7 cut(s) 381, 1009, 1264, 1353, 1379, 1401, 1433
DraIII CACNNNGTG 1 cut(s) 1193
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 851
Eco130I CCWWGG 3 cut(s) 904, 1078, 1231
Eco31I GGTCTC 1 cut(s) 943
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 795
Eco57I CTGAAG 1 cut(s) 1143
EcoRII CCWGG 3 cut(s) 952, 1012, 1461
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 3 cut(s) 904, 1078, 1231
ErhI CCWWGG 3 cut(s) 904, 1078, 1231
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 6 cut(s) 64, 274, 596, 604, 916, 1386
FalI AAGNNNNNCTT 4 cut(s) 480, 512, 797, 829
FaqI GGGAC 3 cut(s) 151, 901, 1255
FatI CATG 6 cut(s) 60, 270, 592, 600, 912, 1382
FauI CCCGC 2 cut(s) 110, 198
FbaI TGATCA 1 cut(s) 1353
Fnu4HI GCNGC 4 cut(s) 70, 73, 324, 1422
FokI GGATG 7 cut(s) 22, 31, 133, 550, 861, 1007, 1274
Fsp4HI GCNGC 4 cut(s) 70, 73, 324, 1422
FspBI CTAG 2 cut(s) 881, 1227
GluI GCNGC 4 cut(s) 70, 73, 324, 1422
HaeIII GGCC 4 cut(s) 32, 495, 853, 958
HapII CCGG 4 cut(s) 178, 567, 868, 1437
HgaI GACGC 2 cut(s) 304, 779
Hin1II CATG 6 cut(s) 64, 274, 596, 604, 916, 1386
HincII GTYRAC 1 cut(s) 1291
HindII GTYRAC 1 cut(s) 1291
HindIII AAGCTT 2 cut(s) 212, 1326
HinfI GANTC 2 cut(s) 604, 683
HpaI GTTAAC 1 cut(s) 1291
HpaII CCGG 4 cut(s) 178, 567, 868, 1437
HphI GGTGA 7 cut(s) 115, 124, 526, 584, 637, 720, 1348
Hpy166II GTNNAC 5 cut(s) 652, 795, 1123, 1211, 1291
Hpy188I TCNGA 5 cut(s) 443, 581, 894, 1379, 1458
Hpy188III TCNNGA 3 cut(s) 379, 622, 1483
Hpy8I GTNNAC 5 cut(s) 652, 795, 1123, 1211, 1291
HpyAV CCTTC 4 cut(s) 460, 652, 718, 1167
HpyCH4III ACNGT 6 cut(s) 172, 245, 431, 520, 649, 1295
HpyCH4IV ACGT 2 cut(s) 348, 537
HpyF10VI GCNNNNNNNGC 3 cut(s) 211, 305, 1475
HpyF3I CTNAG 8 cut(s) 95, 252, 327, 440, 497, 891, 1190, 1457
HpySE526I ACGT 2 cut(s) 348, 537
Hsp92II CATG 6 cut(s) 64, 274, 596, 604, 916, 1386
Ksp22I TGATCA 1 cut(s) 1353
KspAI GTTAAC 1 cut(s) 1291
Kzo9I GATC 7 cut(s) 381, 1009, 1264, 1353, 1379, 1401, 1433
LmnI GCTCC 4 cut(s) 66, 125, 1132, 1418
Lsp1109I GCAGC 4 cut(s) 81, 84, 310, 1408
LweI GCATC 6 cut(s) 155, 211, 955, 985, 1450, 1476
MaeI CTAG 2 cut(s) 881, 1227
MaeII ACGT 2 cut(s) 348, 537
MaeIII GTNAC 6 cut(s) 40, 514, 572, 626, 1235, 1295
MalI GATC 7 cut(s) 383, 1011, 1266, 1355, 1381, 1403, 1435
MbiI CCGCTC 1 cut(s) 117
MboI GATC 7 cut(s) 381, 1009, 1264, 1353, 1379, 1401, 1433
MboII GAAGA 1 cut(s) 817
MfeI CAATTG 1 cut(s) 960
MflI RGATCY 1 cut(s) 1433
MhlI GDGCHC 2 cut(s) 60, 1125
MluCI AATT 4 cut(s) 609, 820, 960, 1090
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 5 cut(s) 379, 393, 711, 817, 1357
MseI TTAA 3 cut(s) 210, 1074, 1290
MslI CAYNNNNRTG 1 cut(s) 1498
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 4 cut(s) 178, 567, 868, 1437
MspR9I CCNGG 4 cut(s) 954, 1014, 1438, 1463
MunI CAATTG 1 cut(s) 960
Mva1269I GAATGC 2 cut(s) 279, 877
MvaI CCWGG 3 cut(s) 954, 1014, 1463
MwoI GCNNNNNNNGC 3 cut(s) 211, 305, 1475
NciI CCSGG 1 cut(s) 1438
NdeII GATC 7 cut(s) 381, 1009, 1264, 1353, 1379, 1401, 1433
NlaIII CATG 6 cut(s) 64, 274, 596, 604, 916, 1386
NlaIV GGNNCC 4 cut(s) 127, 797, 940, 1084
NmuCI GTSAC 3 cut(s) 514, 572, 626
OliI CACNNNNGTG 1 cut(s) 1498
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PctI GAATGC 2 cut(s) 279, 877
PfeI GAWTC 1 cut(s) 604
PflMI CCANNNNNTGG 2 cut(s) 569, 925
PfoI TCCNGGA 1 cut(s) 1012
PkrI GCNGC 4 cut(s) 71, 74, 325, 1423
PleI GAGTC 1 cut(s) 677
PpsI GAGTC 1 cut(s) 677
PsiI TTATAA 1 cut(s) 668
Psp6I CCWGG 3 cut(s) 952, 1012, 1461
PspGI CCWGG 3 cut(s) 952, 1012, 1461
PspN4I GGNNCC 4 cut(s) 127, 797, 940, 1084
PspPI GGNCC 2 cut(s) 795, 956
PstI CTGCAG 3 cut(s) 465, 804, 1426
PsuI RGATCY 1 cut(s) 1433
RsaI GTAC 2 cut(s) 522, 1225
RsaNI GTAC 2 cut(s) 521, 1224
RseI CAYNNNNRTG 1 cut(s) 1498
SaqAI TTAA 3 cut(s) 210, 1074, 1290
SatI GCNGC 4 cut(s) 70, 73, 324, 1422
Sau3AI GATC 7 cut(s) 381, 1009, 1264, 1353, 1379, 1401, 1433
Sau96I GGNCC 2 cut(s) 795, 956
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 4 cut(s) 954, 1014, 1438, 1463
SduI GDGCHC 2 cut(s) 60, 1125
SfaNI GCATC 6 cut(s) 155, 211, 955, 985, 1450, 1476
SfcI CTRYAG 3 cut(s) 461, 800, 1422
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 1498
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
Sse9I AATT 4 cut(s) 609, 820, 960, 1090
SsiI CCGC 2 cut(s) 117, 205
SspI AATATT 1 cut(s) 1041
SspMI CTAG 2 cut(s) 881, 1227
StyD4I CCNGG 4 cut(s) 952, 1012, 1436, 1461
StyI CCWWGG 3 cut(s) 904, 1078, 1231
TaaI ACNGT 6 cut(s) 172, 245, 431, 520, 649, 1295
TaiI ACGT 2 cut(s) 351, 540
TaqI TCGA 3 cut(s) 219, 1267, 1404
TasI AATT 4 cut(s) 609, 820, 960, 1090
TatI WGTACW 1 cut(s) 1223
TfiI GAWTC 1 cut(s) 604
Tru1I TTAA 3 cut(s) 210, 1074, 1290
Tru9I TTAA 3 cut(s) 210, 1074, 1290
TscAI CASTG 2 cut(s) 465, 1037
TseFI GTSAC 3 cut(s) 514, 572, 626
TseI GCWGC 4 cut(s) 69, 72, 323, 1421
Tsp45I GTSAC 3 cut(s) 514, 572, 626
TspDTI ATGAA 3 cut(s) 901, 1166, 1338
TspGWI ACGGA 1 cut(s) 1431
TspRI CASTG 2 cut(s) 465, 1037
Van91I CCANNNNNTGG 2 cut(s) 569, 925
VneI GTGCAC 1 cut(s) 1121
VpaK11BI GGWCC 1 cut(s) 795
XapI RAATTY 2 cut(s) 820, 1090
XcmI CCANNNNNNNNNTGG 2 cut(s) 926, 1076
XspI CTAG 2 cut(s) 881, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.