Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8514003.1

Orthogroup ID

OG0012546

Physical Location & Seq

Genomic Coordinates Forward (+)

839 .. 4110

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8514003.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atgatgtgtggagtagtgattgggattggtgcaaactggggtacacaggcaagccatcctctgcccccagatactgtggtgagcctgctgaggcagaatgggattcaacaggttaagctctttgatgcggaatatgacacgctgacacatttgggtaagtctgggattgaggtcatggtgggtattcctaatgatatgctggcatccctagcctccagtgttaaggcagctgagaagtgggtatctaaaaatgtctcagcacacatctcctccaataatgtcaagatcaggtatgttgcagttggaaatgaacctttcctggaaacatataacggtagcttcctcaggacaatcttccctgctctgcggaatgtccagtcagccctcataaaagcgggcattagtaaccaagtaaaggtgacagtaccccaaaatgctgacgtgtatgcgagttccaacgggcttccatctggtggtgacttccgaactgatatccatgatctaatgcttcaaattatcaagttcttgagtgacaatggtgcccctttcacagtgaacatttacccgtttataagcctttacattgatgccgacttcccagttgattatgcattctttgatggcaatgcatcgcctattacagatggcagtttaacctactataatatgtttgatgcgaactatgacacactagcatgggcgctgcaaaagaatggttttggaaacttgccaataatagttggagagattggatggccaactgatggagacgagaatgctaatctagtctatgctcagaagttcaaccaaggtttcatgtcccacattttgagcgggagaggaactccaatgagaccagggccgattgatgcatatttattcagtttaatagatgaggattcaaagagcattgctccaggaaattttgaacgacactggggaatatttacttttgatggaataccaaaataccagcttaatcttggtacaacaaattcagggtctgtagtagctgcaaaaggggtgcactatttggagcgcaagtggtgtgtgatgaggccatcagcgaacctcgatgacccacaagtggcactcagcgtgagctatgcttgtggacttgcggattgtacaagccttggtcttggttcatcttgtggaaacttggatgctagaggaaacatttcgtttgcatttaatagttactatcaaatgaacaatcaaatggatgtcgcgtgcaagtttccaaacctctcaatgatcaccaaaacaaatccatcagttgggtcttgcaggtttgagataatgattgaaccatattatggaggtgcaggctcagaaaggagacttggtattctccaaaggcctctgaacctggttgccgttcttattctctttttggccaacagttatgtgaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

472

Amino Acids

51.39

Weight (kDa)

5.4

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58090
fragaria_vesca	FvH4_4g00080 FvH4_4g00080 FvH4_4g00080 FvH4_4g00080
malus_domestica	MD04G1001100.v1.1
prunus_persica	Prupe.1G001100_v2.0.a1
pyrus_communis	pycom04g00170
rosa_laevigata	RLG00000010278
rosa_multiflora	Rmu_co8514003.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332690
rosa_rugosa	Rorug03G0297000 Rorug03G0297100 Rorug03G0297100
rosa_samantha	Rh4AG000600 Rh4BG000500 Rh4CG000400 Rh4DG000300
rosa_wichuraiana	Rw4G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	1281
AccB1I	GGYRCC	1 cut(s)	539
AccB7I	CCANNNNNTGG	4 cut(s)	473, 764, 1280, 1319
AccBSI	CCGCTC	1 cut(s)	834
AccII	CGCG	1 cut(s)	1232
AciI	CCGC	5 cut(s)	128, 367, 395, 834, 1121
AcoI	YGGCCR	2 cut(s)	755, 1398
AcsI	RAATTY	2 cut(s)	922, 994
AfaI	GTAC	4 cut(s)	43, 426, 988, 1129
AfiI	CCNNNNNNNGG	6 cut(s)	415, 473, 764, 1087, 1280, 1319
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	6 cut(s)	107, 512, 805, 903, 929, 1310
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	4 cut(s)	318, 856, 916, 1371
AjuI	GAANNNNNNNTTGG	2 cut(s)	1329, 1361
AluBI	AGCT	6 cut(s)	118, 230, 339, 976, 1013, 1104
AluI	AGCT	6 cut(s)	118, 230, 339, 976, 1013, 1104
Alw21I	GWGCWC	1 cut(s)	1029
Alw26I	GTCTC	4 cut(s)	259, 762, 847, 1336
Alw44I	GTGCAC	1 cut(s)	1025
AlwNI	CAGNNNCTG	2 cut(s)	74, 1004
AoxI	GGCC	5 cut(s)	755, 860, 1058, 1361, 1398
ApaLI	GTGCAC	1 cut(s)	1025
ApeKI	GCWGC	3 cut(s)	227, 703, 1013
ApoI	RAATTY	2 cut(s)	922, 994
ArsI	GACNNNNNNTTYG	2 cut(s)	986, 1018
Asp700I	GAANNNNTTC	1 cut(s)	1180
AspLEI	GCGC	2 cut(s)	703, 1041
AspS9I	GGNCC	1 cut(s)	860
AsuHPI	GGTGA	4 cut(s)	91, 430, 488, 1252
AxyI	CCTNAGG	1 cut(s)	344
BaeGI	GKGCMC	2 cut(s)	544, 1029
BaeI	ACNNNNGTAYC	2 cut(s)	63, 96
BalI	TGGCCA	2 cut(s)	757, 1400
BanI	GGYRCC	1 cut(s)	539
Bbv12I	GWGCWC	1 cut(s)	1029
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	3 cut(s)	239, 690, 1000
BccI	CCATC	9 cut(s)	63, 475, 614, 638, 747, 758, 950, 1069, 1282
BceAI	ACGGC	1 cut(s)	1364
BciT130I	CCWGG	4 cut(s)	320, 858, 918, 1373
BclI	TGATCA	1 cut(s)	1257
BcoDI	GTCTC	4 cut(s)	259, 762, 847, 1336
BfaI	CTAG	4 cut(s)	209, 692, 785, 1170
BfmI	CTRYAG	1 cut(s)	1005
BfoI	RGCGCY	1 cut(s)	704
BfuAI	ACCTGC	1 cut(s)	1281
BisI	GCNGC	3 cut(s)	228, 704, 1014
BlsI	GCNGC	3 cut(s)	229, 705, 1015
Bme1390I	CCNGG	4 cut(s)	320, 858, 918, 1373
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	860
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	4 cut(s)	320, 858, 918, 1373
BmrI	ACTGGG	3 cut(s)	46, 593, 946
BmsI	GCATC	7 cut(s)	115, 212, 577, 638, 664, 859, 1156
BmuI	ACTGGG	3 cut(s)	46, 593, 946
BplI	GAGNNNNNCTC	4 cut(s)	829, 861, 898, 930
BpmI	CTGGAG	2 cut(s)	199, 900
Bpu10I	CCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	547
BsaI	GGTCTC	1 cut(s)	847
BsaJI	CCNNGG	3 cut(s)	808, 857, 1135
BsaXI	ACNNNNNCTCC	6 cut(s)	254, 284, 1028, 1058, 1333, 1363
Bsc4I	CCNNNNNNNGG	6 cut(s)	415, 473, 764, 1087, 1280, 1319
Bse1I	ACTGG	5 cut(s)	41, 216, 376, 599, 941
Bse21I	CCTNAGG	1 cut(s)	344
Bse3DI	GCAATG	2 cut(s)	631, 909
BseBI	CCWGG	4 cut(s)	320, 858, 918, 1373
BseDI	CCNNGG	3 cut(s)	808, 857, 1135
BseGI	GGATG	5 cut(s)	55, 203, 758, 1171, 1231
BseLI	CCNNNNNNNGG	6 cut(s)	415, 473, 764, 1087, 1280, 1319
BseMI	GCAATG	2 cut(s)	631, 909
BseMII	CTCAG	7 cut(s)	80, 222, 270, 358, 809, 1108, 1347
BseNI	ACTGG	5 cut(s)	41, 216, 376, 599, 941
BseRI	GAGGAG	1 cut(s)	259
BseSI	GKGCMC	2 cut(s)	544, 1029
BseXI	GCAGC	3 cut(s)	239, 690, 1000
BsgI	GTGCAG	1 cut(s)	1347
Bsh1236I	CGCG	1 cut(s)	1232
BshFI	GGCC	5 cut(s)	757, 862, 1060, 1363, 1400
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	1029
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	6 cut(s)	415, 473, 764, 1087, 1280, 1319
BsmAI	GTCTC	4 cut(s)	259, 762, 847, 1336
BsmBI	CGTCTC	1 cut(s)	762
BsmFI	GGGAC	1 cut(s)	805
BsmI	GAATGC	2 cut(s)	611, 781
BsnI	GGCC	5 cut(s)	757, 862, 1060, 1363, 1400
Bso31I	GGTCTC	1 cut(s)	847
Bsp1286I	GDGCHC	2 cut(s)	544, 1029
Bsp1407I	TGTACA	1 cut(s)	1127
Bsp143I	GATC	3 cut(s)	285, 499, 1257
BspACI	CCGC	5 cut(s)	128, 367, 395, 834, 1121
BspANI	GGCC	5 cut(s)	757, 862, 1060, 1363, 1400
BspCNI	CTCAG	7 cut(s)	81, 223, 269, 357, 808, 1107, 1346
BspFNI	CGCG	1 cut(s)	1232
BspLI	GGNNCC	1 cut(s)	541
BspMI	ACCTGC	1 cut(s)	1281
BspT107I	GGYRCC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	847
BsrBI	CCGCTC	1 cut(s)	834
BsrDI	GCAATG	2 cut(s)	631, 909
BsrGI	TGTACA	1 cut(s)	1127
BsrI	ACTGG	5 cut(s)	41, 216, 376, 599, 941
BssECI	CCNNGG	3 cut(s)	808, 857, 1135
BssMI	GATC	3 cut(s)	285, 499, 1257
BssT1I	CCWWGG	2 cut(s)	808, 1135
Bst2UI	CCWGG	4 cut(s)	320, 858, 918, 1373
Bst4CI	ACNGT	5 cut(s)	76, 335, 424, 553, 1406
BstAUI	TGTACA	1 cut(s)	1127
BstC8I	GCNNGC	6 cut(s)	52, 86, 201, 397, 1234, 1330
BstDEI	CTNAG	7 cut(s)	89, 231, 256, 344, 795, 1094, 1333
BstF5I	GGATG	5 cut(s)	55, 203, 758, 1171, 1231
BstFNI	CGCG	1 cut(s)	1232
BstH2I	RGCGCY	1 cut(s)	704
BstHHI	GCGC	2 cut(s)	703, 1041
BstKTI	GATC	3 cut(s)	288, 502, 1260
BstMAI	GTCTC	4 cut(s)	259, 762, 847, 1336
BstMBI	GATC	3 cut(s)	285, 499, 1257
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	4 cut(s)	320, 858, 918, 1373
BstSCI	CCNGG	4 cut(s)	318, 856, 916, 1371
BstSFI	CTRYAG	1 cut(s)	1005
BstSLI	GKGCMC	2 cut(s)	544, 1029
BstUI	CGCG	1 cut(s)	1232
BstV1I	GCAGC	3 cut(s)	239, 690, 1000
Bsu36I	CCTNAGG	1 cut(s)	344
BsuRI	GGCC	5 cut(s)	757, 862, 1060, 1363, 1400
BtgZI	GCGATG	1 cut(s)	615
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	5 cut(s)	55, 203, 758, 1171, 1231
BtsIMutI	CAGTG	3 cut(s)	223, 558, 934
BveI	ACCTGC	1 cut(s)	1281
Cac8I	GCNNGC	6 cut(s)	52, 86, 201, 397, 1234, 1330
CaiI	CAGNNNCTG	2 cut(s)	74, 1004
CfoI	GCGC	2 cut(s)	703, 1041
Cfr13I	GGNCC	1 cut(s)	860
CsiI	ACCWGGT	1 cut(s)	1371
Csp6I	GTAC	4 cut(s)	42, 425, 987, 1128
CviAII	CATG	4 cut(s)	175, 497, 696, 817
CviQI	GTAC	4 cut(s)	42, 425, 987, 1128
DdeI	CTNAG	7 cut(s)	89, 231, 256, 344, 795, 1094, 1333
DpnI	GATC	3 cut(s)	287, 501, 1259
DpnII	GATC	3 cut(s)	285, 499, 1257
EaeI	YGGCCR	2 cut(s)	755, 1398
Eco130I	CCWWGG	2 cut(s)	808, 1135
Eco147I	AGGCCT	1 cut(s)	1363
Eco31I	GGTCTC	1 cut(s)	847
Eco32I	GATATC	1 cut(s)	493
Eco81I	CCTNAGG	1 cut(s)	344
EcoRII	CCWGG	4 cut(s)	318, 856, 916, 1371
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	808, 1135
EcoT22I	ATGCAT	3 cut(s)	613, 631, 874
ErhI	CCWWGG	2 cut(s)	808, 1135
Esp3I	CGTCTC	1 cut(s)	762
FaeI	CATG	4 cut(s)	178, 500, 699, 820
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	4 cut(s)	174, 496, 695, 816
FauI	CCCGC	2 cut(s)	388, 827
FbaI	TGATCA	1 cut(s)	1257
Fnu4HI	GCNGC	3 cut(s)	228, 704, 1014
FokI	GGATG	5 cut(s)	42, 190, 765, 1178, 1238
Fsp4HI	GCNGC	3 cut(s)	228, 704, 1014
FspBI	CTAG	4 cut(s)	209, 692, 785, 1170
GlaI	GCGC	2 cut(s)	702, 1040
GluI	GCNGC	3 cut(s)	228, 704, 1014
GsuI	CTGGAG	2 cut(s)	199, 900
HaeII	RGCGCY	1 cut(s)	704
HaeIII	GGCC	5 cut(s)	757, 862, 1060, 1363, 1400
HhaI	GCGC	2 cut(s)	703, 1041
Hin1II	CATG	4 cut(s)	178, 500, 699, 820
Hin6I	GCGC	2 cut(s)	701, 1039
HinP1I	GCGC	2 cut(s)	701, 1039
HinfI	GANTC	2 cut(s)	103, 899
HphI	GGTGA	4 cut(s)	91, 430, 488, 1252
Hpy166II	GTNNAC	4 cut(s)	44, 556, 1027, 1115
Hpy188I	TCNGA	4 cut(s)	485, 798, 1336, 1368
Hpy188III	TCNNGA	3 cut(s)	283, 346, 526
Hpy8I	GTNNAC	4 cut(s)	44, 556, 1027, 1115
HpyCH4III	ACNGT	5 cut(s)	76, 335, 424, 553, 1406
HpyCH4IV	ACGT	1 cut(s)	441
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	7 cut(s)	89, 231, 256, 344, 795, 1094, 1333
HpySE526I	ACGT	1 cut(s)	441
Hsp92II	CATG	4 cut(s)	178, 500, 699, 820
HspAI	GCGC	2 cut(s)	701, 1039
Ksp22I	TGATCA	1 cut(s)	1257
Kzo9I	GATC	3 cut(s)	285, 499, 1257
LmnI	GCTCC	2 cut(s)	919, 1036
Lsp1109I	GCAGC	3 cut(s)	239, 690, 1000
LweI	GCATC	7 cut(s)	115, 212, 577, 638, 664, 859, 1156
MabI	ACCWGGT	1 cut(s)	1371
MaeI	CTAG	4 cut(s)	209, 692, 785, 1170
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	5 cut(s)	404, 418, 476, 530, 1199
MalI	GATC	3 cut(s)	287, 501, 1259
MbiI	CCGCTC	1 cut(s)	834
MboI	GATC	3 cut(s)	285, 499, 1257
MboII	GAAGA	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	544, 1029
MlsI	TGGCCA	2 cut(s)	757, 1400
MluCI	AATT	4 cut(s)	513, 922, 994, 1414
MluNI	TGGCCA	2 cut(s)	757, 1400
MmeI	TCCRAC	3 cut(s)	283, 480, 721
Mox20I	TGGCCA	2 cut(s)	757, 1400
Mph1103I	ATGCAT	3 cut(s)	613, 631, 874
MroXI	GAANNNNTTC	1 cut(s)	1180
MscI	TGGCCA	2 cut(s)	757, 1400
MseI	TTAA	7 cut(s)	114, 222, 653, 887, 978, 1194, 1417
MslI	CAYNNNNRTG	1 cut(s)	694
Msp20I	TGGCCA	2 cut(s)	757, 1400
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	4 cut(s)	320, 858, 918, 1373
Mva1269I	GAATGC	2 cut(s)	611, 781
MvaI	CCWGG	4 cut(s)	320, 858, 918, 1373
MvnI	CGCG	1 cut(s)	1232
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	3 cut(s)	285, 499, 1257
NlaIII	CATG	4 cut(s)	178, 500, 699, 820
NlaIV	GGNNCC	1 cut(s)	541
NmuCI	GTSAC	3 cut(s)	418, 476, 530
NsiI	ATGCAT	3 cut(s)	613, 631, 874
PceI	AGGCCT	1 cut(s)	1363
PctI	GAATGC	2 cut(s)	611, 781
PdmI	GAANNNNTTC	1 cut(s)	1180
PfeI	GAWTC	2 cut(s)	103, 899
PflMI	CCANNNNNTGG	4 cut(s)	473, 764, 1280, 1319
PfoI	TCCNGGA	2 cut(s)	318, 916
PkrI	GCNGC	3 cut(s)	229, 705, 1015
PsiI	TTATAA	1 cut(s)	572
Psp6I	CCWGG	4 cut(s)	318, 856, 916, 1371
PspGI	CCWGG	4 cut(s)	318, 856, 916, 1371
PspN4I	GGNNCC	1 cut(s)	541
PspPI	GGNCC	1 cut(s)	860
PstNI	CAGNNNCTG	2 cut(s)	74, 1004
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	4 cut(s)	43, 426, 988, 1129
RsaNI	GTAC	4 cut(s)	42, 425, 987, 1128
RseI	CAYNNNNRTG	1 cut(s)	694
SaqAI	TTAA	7 cut(s)	114, 222, 653, 887, 978, 1194, 1417
SatI	GCNGC	3 cut(s)	228, 704, 1014
Sau3AI	GATC	3 cut(s)	285, 499, 1257
Sau96I	GGNCC	1 cut(s)	860
ScrFI	CCNGG	4 cut(s)	320, 858, 918, 1373
SduI	GDGCHC	2 cut(s)	544, 1029
SexAI	ACCWGGT	1 cut(s)	1371
SfaNI	GCATC	7 cut(s)	115, 212, 577, 638, 664, 859, 1156
SfcI	CTRYAG	1 cut(s)	1005
SmiMI	CAYNNNNRTG	1 cut(s)	694
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
Sse9I	AATT	4 cut(s)	513, 922, 994, 1414
SseBI	AGGCCT	1 cut(s)	1363
SsiI	CCGC	5 cut(s)	128, 367, 395, 834, 1121
SspI	AATATT	1 cut(s)	945
SspMI	CTAG	4 cut(s)	209, 692, 785, 1170
StuI	AGGCCT	1 cut(s)	1363
StyD4I	CCNGG	4 cut(s)	318, 856, 916, 1371
StyI	CCWWGG	2 cut(s)	808, 1135
TaaI	ACNGT	5 cut(s)	76, 335, 424, 553, 1406
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	1 cut(s)	1074
TasI	AATT	4 cut(s)	513, 922, 994, 1414
TatI	WGTACW	1 cut(s)	1127
TfiI	GAWTC	2 cut(s)	103, 899
Tru1I	TTAA	7 cut(s)	114, 222, 653, 887, 978, 1194, 1417
Tru9I	TTAA	7 cut(s)	114, 222, 653, 887, 978, 1194, 1417
TscAI	CASTG	3 cut(s)	223, 558, 941
TseFI	GTSAC	3 cut(s)	418, 476, 530
TseI	GCWGC	3 cut(s)	227, 703, 1013
Tsp45I	GTSAC	3 cut(s)	418, 476, 530
TspDTI	ATGAA	4 cut(s)	324, 805, 1137, 1226
TspRI	CASTG	3 cut(s)	223, 558, 941
Van91I	CCANNNNNTGG	4 cut(s)	473, 764, 1280, 1319
VneI	GTGCAC	1 cut(s)	1025
XapI	RAATTY	2 cut(s)	922, 994
XcmI	CCANNNNNNNNNTGG	1 cut(s)	980
XmnI	GAANNNNTTC	1 cut(s)	1180
XspI	CTAG	4 cut(s)	209, 692, 785, 1170
Zsp2I	ATGCAT	3 cut(s)	613, 631, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.