Rh4CG000400

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
86667 .. 91062
4396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG000400.1

Sequence Viewer

Length: 1479 bp
ATGGGGAGGTGGTTTTCAGGTGGTATTTCTATTTGGCTAGTTATCCTGATTTCAAACTTAATGATGTGTGGAGTAGTGATTGGGATTGGTGCAAACTGGGGTACACAGGCAAGCCATCCTCTGCCCCCAGATACTGTGGTGAGCCTGCTGAGACAAAATGGGATTCAACAGGTTAAGCTCTTTGATGCGGAATATGACACGCTGACACATTTGGGTAAGTCTGGGATTGAGGTCATGGTGGGTATTCCTAATGATATGCTGGCATCCCTAGCCTCCAGTGTTAAGGCAGCTGAGAAGTGGGTATCCAAAAATGTCTCAGCACACATCTCCTCCAATAATGTCAAGATCAGGTATGTTGCAGTTGGAAATGAACCTTTCCTGGAAACATATAACGGTAGCTTCCTCAGGACAATCTTCCCTGCTTTGCGGAATGTCCAGTCAGCTCTCATAAAAGCAGGCATTAGTAACCAAGTAAAGGTGACAGTGCCCCAAAATGCTGACGTGTATGCGAGTTCCAACGGGCTTCCATCTGGTGGTGACTTCCGAACTGATATCCATGATCTAATGCTTCAAATTATCAAGTTCTTGAGTGACAATGGTGCCCCTTTCACAGTGAACATTTACCCGTTTATAAGCCTTTACACTGATGCCGACTTCCCAGTTGATTATGCATTCTTTGATGGCAATGCATCGCCTATTACAGATGGCAGTTTAACCTACTATAATATGTTTGATGCGAACTATGACACACTAGCATGGGCGCTGCAAAAGAATGGTTTTGGAAACTTGCCAATAATAGTTGGAGAGATTGGATGGCCAACTGATGGAGACGAGAATGCTAATCTAGTCTATGCTCAGAAGTTCAACCAAGGTTTCATGTCCCACATTTTGAGCGGGAGAGGAACTCCGATGAGACCAGGGCCAATTGATGCATATTTATTCAGTTTAATAGATGAGGATTCAAAGAGCATTGCTCCAGGAAATTTTGAACGACACTGGGGAATATTTACTTTTGATGGAATACCAAAATACCAGCTTAATCTTGGTTCAACAAATTCAGGGTCTGTAGTAGCTGCAAAAGGGGTGCACTATTTGGAGCGCAAGTGGTGTGTGATGAGGCCATCAGCGAATCTCGATGACCCACAAGTGGCACTCAGCGTGAGCTATGCTTGTGGACTTGGGGATTGTACAAGCCTTGGTCTTGGTTCATCTTGTGGAAACTTGGATGCTAGAGGAAACATTTCGTATGCATTTAATAGTTACTATCAGATGAACAATCAAATGGACGTTGCGTGCAAGTTTCCAAACCTCTCAATGATCACCAAAACAAATCCGTCAGTTGGGTCTTGCAGGTTTGAGATAATGATTGAACCATATTATGGAGGTGCAGACTCAGAAAGGAGACTTGGTATTCTCCAAAGGCCTCTGAGCCTGGTTGCCGTTCTTATTCTCTTTTTTGCCAACAGTTATGTGAATTAA

Protein Analysis

492

Amino Acids

53.67

Weight (kDa)

5.4

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 347 2.3e-65 Glycosyl hydrolases family 17
X8 PF07983 368 - 437 6.6e-14 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012546)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
Acc36I ACCTGC 1 cut(s) 1341
AccB1I GGYRCC 1 cut(s) 599
AccB7I CCANNNNNTGG 3 cut(s) 533, 824, 1379
AccBSI CCGCTC 1 cut(s) 894
AciI CCGC 3 cut(s) 188, 427, 894
AcoI YGGCCR 1 cut(s) 815
AcsI RAATTY 2 cut(s) 982, 1054
AfaI GTAC 2 cut(s) 103, 1189
AfiI CCNNNNNNNGG 6 cut(s) 475, 533, 824, 1147, 1340, 1379
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 8 cut(s) 54, 167, 572, 865, 963, 989, 1050, 1370
AjiI CACGTC 1 cut(s) 502
AjnI CCWGG 4 cut(s) 378, 916, 976, 1431
AjuI GAANNNNNNNTTGG 2 cut(s) 1389, 1421
AluBI AGCT 7 cut(s) 178, 290, 399, 443, 1036, 1073, 1164
AluI AGCT 7 cut(s) 178, 290, 399, 443, 1036, 1073, 1164
Alw21I GWGCWC 1 cut(s) 1089
Alw26I GTCTC 5 cut(s) 145, 319, 822, 907, 1396
Alw44I GTGCAC 1 cut(s) 1085
AlwNI CAGNNNCTG 2 cut(s) 134, 1064
AoxI GGCC 4 cut(s) 815, 920, 1118, 1421
ApaLI GTGCAC 1 cut(s) 1085
ApeKI GCWGC 3 cut(s) 287, 763, 1073
ApoI RAATTY 2 cut(s) 982, 1054
ArsI GACNNNNNNTTYG 2 cut(s) 1046, 1078
Asp700I GAANNNNTTC 1 cut(s) 1240
AspLEI GCGC 2 cut(s) 763, 1101
AspS9I GGNCC 1 cut(s) 920
AsuHPI GGTGA 4 cut(s) 151, 490, 548, 1312
AxyI CCTNAGG 1 cut(s) 404
BaeGI GKGCMC 3 cut(s) 489, 604, 1089
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BalI TGGCCA 1 cut(s) 817
BanI GGYRCC 1 cut(s) 599
Bbv12I GWGCWC 1 cut(s) 1089
BbvI GCAGC 3 cut(s) 299, 750, 1060
BccI CCATC 8 cut(s) 123, 535, 674, 698, 807, 818, 1010, 1129
BceAI ACGGC 1 cut(s) 1424
BciT130I CCWGG 4 cut(s) 380, 918, 978, 1433
BciVI GTATCC 1 cut(s) 313
BclI TGATCA 1 cut(s) 1317
BcoDI GTCTC 5 cut(s) 145, 319, 822, 907, 1396
BfaI CTAG 5 cut(s) 38, 269, 752, 845, 1230
BfmI CTRYAG 1 cut(s) 1065
BfoI RGCGCY 1 cut(s) 764
BfuAI ACCTGC 1 cut(s) 1341
BfuI GTATCC 1 cut(s) 313
BisI GCNGC 3 cut(s) 288, 764, 1074
BlsI GCNGC 3 cut(s) 289, 765, 1075
Bme1390I CCNGG 4 cut(s) 380, 918, 978, 1433
BmgBI CACGTC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 920
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 4 cut(s) 380, 918, 978, 1433
BmrI ACTGGG 3 cut(s) 106, 653, 1006
BmsI GCATC 7 cut(s) 175, 272, 637, 698, 724, 919, 1216
BmuI ACTGGG 3 cut(s) 106, 653, 1006
BplI GAGNNNNNCTC 4 cut(s) 889, 921, 958, 990
BpmI CTGGAG 2 cut(s) 259, 960
BpuEI CTTGAG 1 cut(s) 607
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 3 cut(s) 868, 917, 1195
BsaXI ACNNNNNCTCC 6 cut(s) 314, 344, 1088, 1118, 1393, 1423
Bsc4I CCNNNNNNNGG 6 cut(s) 475, 533, 824, 1147, 1340, 1379
Bse1I ACTGG 5 cut(s) 101, 276, 436, 659, 1001
Bse21I CCTNAGG 1 cut(s) 404
Bse3DI GCAATG 2 cut(s) 691, 969
BseBI CCWGG 4 cut(s) 380, 918, 978, 1433
BseDI CCNNGG 3 cut(s) 868, 917, 1195
BseGI GGATG 4 cut(s) 115, 263, 818, 1231
BseLI CCNNNNNNNGG 6 cut(s) 475, 533, 824, 1147, 1340, 1379
BseMI GCAATG 2 cut(s) 691, 969
BseMII CTCAG 8 cut(s) 140, 282, 330, 418, 869, 1168, 1407, 1418
BseNI ACTGG 5 cut(s) 101, 276, 436, 659, 1001
BseRI GAGGAG 1 cut(s) 319
BseSI GKGCMC 3 cut(s) 489, 604, 1089
BseXI GCAGC 3 cut(s) 299, 750, 1060
BsgI GTGCAG 1 cut(s) 1407
BshFI GGCC 4 cut(s) 817, 922, 1120, 1423
BshNI GGYRCC 1 cut(s) 599
BsiHKAI GWGCWC 1 cut(s) 1089
BslFI GGGAC 1 cut(s) 865
BslI CCNNNNNNNGG 6 cut(s) 475, 533, 824, 1147, 1340, 1379
BsmAI GTCTC 5 cut(s) 145, 319, 822, 907, 1396
BsmBI CGTCTC 1 cut(s) 822
BsmFI GGGAC 1 cut(s) 865
BsmI GAATGC 2 cut(s) 671, 841
BsnI GGCC 4 cut(s) 817, 922, 1120, 1423
Bso31I GGTCTC 1 cut(s) 907
Bsp1286I GDGCHC 3 cut(s) 489, 604, 1089
Bsp1407I TGTACA 1 cut(s) 1187
Bsp143I GATC 3 cut(s) 345, 559, 1317
BspACI CCGC 3 cut(s) 188, 427, 894
BspANI GGCC 4 cut(s) 817, 922, 1120, 1423
BspCNI CTCAG 8 cut(s) 141, 283, 329, 417, 868, 1167, 1406, 1419
BspLI GGNNCC 1 cut(s) 601
BspMI ACCTGC 1 cut(s) 1341
BspT107I GGYRCC 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 907
BsrBI CCGCTC 1 cut(s) 894
BsrDI GCAATG 2 cut(s) 691, 969
BsrGI TGTACA 1 cut(s) 1187
BsrI ACTGG 5 cut(s) 101, 276, 436, 659, 1001
BssECI CCNNGG 3 cut(s) 868, 917, 1195
BssMI GATC 3 cut(s) 345, 559, 1317
BssT1I CCWWGG 2 cut(s) 868, 1195
Bst2UI CCWGG 4 cut(s) 380, 918, 978, 1433
Bst4CI ACNGT 5 cut(s) 136, 395, 484, 613, 1466
BstAUI TGTACA 1 cut(s) 1187
BstC8I GCNNGC 5 cut(s) 112, 146, 261, 457, 1294
BstDEI CTNAG 8 cut(s) 149, 291, 316, 404, 855, 1154, 1393, 1427
BstF5I GGATG 4 cut(s) 115, 263, 818, 1231
BstH2I RGCGCY 1 cut(s) 764
BstHHI GCGC 2 cut(s) 763, 1101
BstKTI GATC 3 cut(s) 348, 562, 1320
BstMAI GTCTC 5 cut(s) 145, 319, 822, 907, 1396
BstMBI GATC 3 cut(s) 345, 559, 1317
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 4 cut(s) 380, 918, 978, 1433
BstSCI CCNGG 4 cut(s) 378, 916, 976, 1431
BstSFI CTRYAG 1 cut(s) 1065
BstSLI GKGCMC 3 cut(s) 489, 604, 1089
BstV1I GCAGC 3 cut(s) 299, 750, 1060
Bsu36I CCTNAGG 1 cut(s) 404
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 4 cut(s) 817, 922, 1120, 1423
BtgZI GCGATG 1 cut(s) 675
BtrI CACGTC 1 cut(s) 502
BtsCI GGATG 4 cut(s) 115, 263, 818, 1231
BtsIMutI CAGTG 5 cut(s) 283, 489, 618, 642, 994
BveI ACCTGC 1 cut(s) 1341
Cac8I GCNNGC 5 cut(s) 112, 146, 261, 457, 1294
CaiI CAGNNNCTG 2 cut(s) 134, 1064
CfoI GCGC 2 cut(s) 763, 1101
Cfr13I GGNCC 1 cut(s) 920
Csp6I GTAC 2 cut(s) 102, 1188
CviAII CATG 4 cut(s) 235, 557, 756, 877
CviQI GTAC 2 cut(s) 102, 1188
DdeI CTNAG 8 cut(s) 149, 291, 316, 404, 855, 1154, 1393, 1427
DpnI GATC 3 cut(s) 347, 561, 1319
DpnII GATC 3 cut(s) 345, 559, 1317
EaeI YGGCCR 1 cut(s) 815
Eco130I CCWWGG 2 cut(s) 868, 1195
Eco147I AGGCCT 1 cut(s) 1423
Eco31I GGTCTC 1 cut(s) 907
Eco32I GATATC 1 cut(s) 553
Eco81I CCTNAGG 1 cut(s) 404
EcoRII CCWGG 4 cut(s) 378, 916, 976, 1431
EcoRV GATATC 1 cut(s) 553
EcoT14I CCWWGG 2 cut(s) 868, 1195
EcoT22I ATGCAT 4 cut(s) 673, 691, 934, 1252
ErhI CCWWGG 2 cut(s) 868, 1195
Esp3I CGTCTC 1 cut(s) 822
FaeI CATG 4 cut(s) 238, 560, 759, 880
FaqI GGGAC 1 cut(s) 865
FatI CATG 4 cut(s) 234, 556, 755, 876
FauI CCCGC 1 cut(s) 887
FbaI TGATCA 1 cut(s) 1317
Fnu4HI GCNGC 3 cut(s) 288, 764, 1074
FokI GGATG 4 cut(s) 102, 250, 825, 1238
Fsp4HI GCNGC 3 cut(s) 288, 764, 1074
FspBI CTAG 5 cut(s) 38, 269, 752, 845, 1230
GlaI GCGC 2 cut(s) 762, 1100
GluI GCNGC 3 cut(s) 288, 764, 1074
GsuI CTGGAG 2 cut(s) 259, 960
HaeII RGCGCY 1 cut(s) 764
HaeIII GGCC 4 cut(s) 817, 922, 1120, 1423
HhaI GCGC 2 cut(s) 763, 1101
Hin1II CATG 4 cut(s) 238, 560, 759, 880
Hin6I GCGC 2 cut(s) 761, 1099
HinP1I GCGC 2 cut(s) 761, 1099
HinfI GANTC 4 cut(s) 163, 959, 1129, 1391
HphI GGTGA 4 cut(s) 151, 490, 548, 1312
Hpy166II GTNNAC 4 cut(s) 104, 616, 1087, 1175
Hpy188I TCNGA 6 cut(s) 545, 858, 909, 1269, 1396, 1428
Hpy188III TCNNGA 5 cut(s) 46, 343, 406, 586, 1133
Hpy8I GTNNAC 4 cut(s) 104, 616, 1087, 1175
HpyCH4III ACNGT 5 cut(s) 136, 395, 484, 613, 1466
HpyCH4IV ACGT 2 cut(s) 501, 1287
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 8 cut(s) 149, 291, 316, 404, 855, 1154, 1393, 1427
HpySE526I ACGT 2 cut(s) 501, 1287
Hsp92II CATG 4 cut(s) 238, 560, 759, 880
HspAI GCGC 2 cut(s) 761, 1099
Ksp22I TGATCA 1 cut(s) 1317
Kzo9I GATC 3 cut(s) 345, 559, 1317
LmnI GCTCC 2 cut(s) 979, 1096
Lsp1109I GCAGC 3 cut(s) 299, 750, 1060
LweI GCATC 7 cut(s) 175, 272, 637, 698, 724, 919, 1216
MaeI CTAG 5 cut(s) 38, 269, 752, 845, 1230
MaeII ACGT 2 cut(s) 501, 1287
MaeIII GTNAC 5 cut(s) 464, 478, 536, 590, 1259
MalI GATC 3 cut(s) 347, 561, 1319
MbiI CCGCTC 1 cut(s) 894
MboI GATC 3 cut(s) 345, 559, 1317
MboII GAAGA 1 cut(s) 406
MfeI CAATTG 1 cut(s) 924
MhlI GDGCHC 3 cut(s) 489, 604, 1089
MlsI TGGCCA 1 cut(s) 817
MluCI AATT 5 cut(s) 573, 924, 982, 1054, 1474
MluNI TGGCCA 1 cut(s) 817
MlyI GAGTC 1 cut(s) 1385
MmeI TCCRAC 3 cut(s) 343, 540, 781
Mox20I TGGCCA 1 cut(s) 817
Mph1103I ATGCAT 4 cut(s) 673, 691, 934, 1252
MroXI GAANNNNTTC 1 cut(s) 1240
MscI TGGCCA 1 cut(s) 817
MseI TTAA 8 cut(s) 59, 174, 282, 713, 947, 1038, 1254, 1477
MslI CAYNNNNRTG 1 cut(s) 754
Msp20I TGGCCA 1 cut(s) 817
MspA1I CMGCKG 1 cut(s) 290
MspR9I CCNGG 4 cut(s) 380, 918, 978, 1433
MunI CAATTG 1 cut(s) 924
Mva1269I GAATGC 2 cut(s) 671, 841
MvaI CCWGG 4 cut(s) 380, 918, 978, 1433
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 3 cut(s) 345, 559, 1317
NlaIII CATG 4 cut(s) 238, 560, 759, 880
NlaIV GGNNCC 1 cut(s) 601
NmuCI GTSAC 3 cut(s) 478, 536, 590
NsiI ATGCAT 4 cut(s) 673, 691, 934, 1252
PceI AGGCCT 1 cut(s) 1423
PctI GAATGC 2 cut(s) 671, 841
PdmI GAANNNNTTC 1 cut(s) 1240
PfeI GAWTC 3 cut(s) 163, 959, 1129
PflMI CCANNNNNTGG 3 cut(s) 533, 824, 1379
PfoI TCCNGGA 2 cut(s) 378, 976
PkrI GCNGC 3 cut(s) 289, 765, 1075
PleI GAGTC 1 cut(s) 1385
PpsI GAGTC 1 cut(s) 1385
PsiI TTATAA 1 cut(s) 632
Psp6I CCWGG 4 cut(s) 378, 916, 976, 1431
PspGI CCWGG 4 cut(s) 378, 916, 976, 1431
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 1 cut(s) 920
PstNI CAGNNNCTG 2 cut(s) 134, 1064
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 2 cut(s) 103, 1189
RsaNI GTAC 2 cut(s) 102, 1188
RseI CAYNNNNRTG 1 cut(s) 754
SaqAI TTAA 8 cut(s) 59, 174, 282, 713, 947, 1038, 1254, 1477
SatI GCNGC 3 cut(s) 288, 764, 1074
Sau3AI GATC 3 cut(s) 345, 559, 1317
Sau96I GGNCC 1 cut(s) 920
SchI GAGTC 1 cut(s) 1385
ScrFI CCNGG 4 cut(s) 380, 918, 978, 1433
SduI GDGCHC 3 cut(s) 489, 604, 1089
SfaNI GCATC 7 cut(s) 175, 272, 637, 698, 724, 919, 1216
SfcI CTRYAG 1 cut(s) 1065
SmiMI CAYNNNNRTG 1 cut(s) 754
SmlI CTYRAG 1 cut(s) 586
SmoI CTYRAG 1 cut(s) 586
Sse9I AATT 5 cut(s) 573, 924, 982, 1054, 1474
SseBI AGGCCT 1 cut(s) 1423
SsiI CCGC 3 cut(s) 188, 427, 894
SspI AATATT 1 cut(s) 1005
SspMI CTAG 5 cut(s) 38, 269, 752, 845, 1230
StuI AGGCCT 1 cut(s) 1423
StyD4I CCNGG 4 cut(s) 378, 916, 976, 1431
StyI CCWWGG 2 cut(s) 868, 1195
TaaI ACNGT 5 cut(s) 136, 395, 484, 613, 1466
TaiI ACGT 2 cut(s) 504, 1290
TaqI TCGA 1 cut(s) 1134
TasI AATT 5 cut(s) 573, 924, 982, 1054, 1474
TatI WGTACW 1 cut(s) 1187
TfiI GAWTC 3 cut(s) 163, 959, 1129
Tru1I TTAA 8 cut(s) 59, 174, 282, 713, 947, 1038, 1254, 1477
Tru9I TTAA 8 cut(s) 59, 174, 282, 713, 947, 1038, 1254, 1477
TscAI CASTG 5 cut(s) 283, 489, 618, 649, 1001
TseFI GTSAC 3 cut(s) 478, 536, 590
TseI GCWGC 3 cut(s) 287, 763, 1073
Tsp45I GTSAC 3 cut(s) 478, 536, 590
TspDTI ATGAA 4 cut(s) 384, 865, 1197, 1286
TspGWI ACGGA 1 cut(s) 1323
TspRI CASTG 5 cut(s) 283, 489, 618, 649, 1001
Van91I CCANNNNNTGG 3 cut(s) 533, 824, 1379
VneI GTGCAC 1 cut(s) 1085
XapI RAATTY 2 cut(s) 982, 1054
XcmI CCANNNNNNNNNTGG 1 cut(s) 1040
XmnI GAANNNNTTC 1 cut(s) 1240
XspI CTAG 5 cut(s) 38, 269, 752, 845, 1230
Zsp2I ATGCAT 4 cut(s) 673, 691, 934, 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.