Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012546

Physical Location & Seq

Genomic Coordinates Reverse (-)

30652059 .. 30654047

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0297000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGGAGGAGCTGAAGCCAACCCCCGCCAACTCATCCCCGCTCACCCCACTCGGCTTCTTAGACCGAGCCGCCACCGTCTACGGCGACTGCCCTTCTGTCATCTACGAAGACACCACCTACACGTGGAGCCAGACCCACCGTCGATGCCTCCGCGTCGCTTCCTCCATCTCCTCCCTCGGCATCCGACGCGGCCACGTCGTCTCCGTCCTCTCCCCCAACATCCCCGCCATGTACGAGCTCCACTTCTCCGTCCCCATGTCCGGCGCCGTCCTCAACACCATCAACACCCGCCTCGACACCCGCACCGTCTCCCTCCTCCTCCGCCACAGCCAATCCAAGCTCCTCTTCGTCGACCACACCCTCAGCTCCCTCGTCCTCGACGCCCTCCGTCTCTTCCCTCCCAACACCCCCACCCCCCTCCTCGTCCTCATCGCCGACGACGATGCACCTGCACCCCATCCCAACTCCGACTCATCCCCGTTCTGCGCCACGTACGAGGAAATGGTGGAGAGCGGCGATCCGGACTTCCAGTGGGCCCTACCGGAGAACGAGTGGGACCCGATGACGCTGAACTACACTTCCGGCACTACTTCCTCCCCCAAGGGAGTGGTCCACTGCCACAGAGGGCTCTTCATCATCACCGTCAACTCTCTCCTTGACTGGGCAGTACCCAGACAGCCGGTCTATCTATGGACGCTTCCGATGTTCCACGCCAACGGCTGGAGCTACCCTTACGGGATCGCCGCCGTGGGAGGGACCAACGTCTGCGTCCGCAAATTCGACGCGCGTGTCATCTACGACTTGATCAGACGACACGGCGTCACTCACATGTGCGGAGCGCCGGTGGTCCTCAACATGCTGACGAATGTACCGAACAACGAGCCTTTGAGGAACCCGGTCCAGATCATGACCGCCGGAGCTCCGCCGCCCGCGGCGGTTCTGTCTCGGACTGAGTCGCTGGGATTCGTGGTGAGCCATGGGTACGGGTTGACGGAGACGGCGGGGCTGGTGGTGTCGTGCGCGTGGAAGCCGGGGTGGAATAAGTTGCCGGCGACGGAGAGGGCGAGGCTGAAGTCGAGGCAGGGAGTGAGGACGGTGGCCATGACCCGGGTGGACGTGGTGGATCCGGATACGGGTAAGCCGGTTAAAAGCGACGGTTCGTCGCTTGGGGAGGTGGTTCTCAGAGGCGGGTGTGTGATGTTGGGTTATCTGAAAGACCCAAAAGGCACGGCCAGTTGCATGAAAGACGGTTGGTTTTACACCGGCGACGTGGCGGTGATGCACCCGGACGGGTATCTTGAGATCAAGGACAGATCCAAGGACGTGATCATAAGCGGGGGAGAGAACTTGAGCAGCGTGGAGGTGGAGTCGGTTCTCTACACCAACTCCGCGGTGAACGAGGCGGCCGTGGTGGCGAGGCCTGACGAGTTCTGGGGGGAGACGCCGTGCGCGTTTGTGAGCCTGAAAGATGACGTGGGGCGGAGGCCGACGGAGAAGGAGATGATAGAGTACTGCAGAGGAAAGCTGCCGAATTTCATGGTGCCGAAGACGGTGGTGTTTATAGAGGAGCTGCCGAAGACGTCGACGGGGAAGATTCAGAAGTTCGTGCTGAGAGAGATGGCCAAGGCCTTGGGGTCCACAAGGCTGAGTCGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

552

Amino Acids

60.54

Weight (kDa)

6.68

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	21 - 404	2.9e-76	AMP-binding enzyme
AMP-binding_C	PF13193	454 - 531	3e-24	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58090
fragaria_vesca	FvH4_4g00080 FvH4_4g00080 FvH4_4g00080 FvH4_4g00080
malus_domestica	MD04G1001100.v1.1
prunus_persica	Prupe.1G001100_v2.0.a1
pyrus_communis	pycom04g00170
rosa_laevigata	RLG00000010278
rosa_multiflora	Rmu_co8514003.1_g000001
rosa_roxburghii	Rroxscaffold_5G00332690
rosa_rugosa	Rorug03G0297000 Rorug03G0297100 Rorug03G0297100
rosa_samantha	Rh4AG000600 Rh4BG000500 Rh4CG000400 Rh4DG000300
rosa_wichuraiana	Rw4G000840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	457
AasI	GACNNNNNNGTC	1 cut(s)	788
AatII	GACGTC	1 cut(s)	1583
Acc36I	ACCTGC	1 cut(s)	457
AccB1I	GGYRCC	2 cut(s)	263, 1540
AccB7I	CCANNNNNTGG	1 cut(s)	720
AccBSI	CCGCTC	2 cut(s)	40, 513
AccI	GTMKAC	3 cut(s)	78, 351, 1583
AccII	CGCG	8 cut(s)	153, 189, 785, 787, 932, 1022, 1391, 1451
AccIII	TCCGGA	2 cut(s)	520, 1126
AclWI	GGATC	5 cut(s)	512, 746, 1118, 1131, 1308
AcoI	YGGCCR	5 cut(s)	190, 1098, 1230, 1404, 1620
AcsI	RAATTY	2 cut(s)	776, 1531
AcuI	CTGAAG	2 cut(s)	32, 1091
AcvI	CACGTG	1 cut(s)	123
AcyI	GRCGYC	5 cut(s)	264, 381, 819, 1442, 1580
AfaI	GTAC	6 cut(s)	233, 494, 669, 870, 983, 1511
AfiI	CCNNNNNNNGG	7 cut(s)	123, 260, 661, 720, 753, 1107, 1133
AflIII	ACRYGT	2 cut(s)	120, 828
AhdI	GACNNNNNGTC	4 cut(s)	138, 680, 818, 1159
AjiI	CACGTC	5 cut(s)	196, 1117, 1270, 1324, 1474
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AloI	GAACNNNNNNTCC	2 cut(s)	563, 595
AluBI	AGCT	8 cut(s)	10, 238, 340, 366, 726, 920, 1525, 1570
AluI	AGCT	8 cut(s)	10, 238, 340, 366, 726, 920, 1525, 1570
Alw21I	GWGCWC	2 cut(s)	240, 922
Alw26I	GTCTC	6 cut(s)	205, 313, 395, 948, 989, 1433
AlwI	GGATC	5 cut(s)	512, 746, 1118, 1131, 1308
Ama87I	CYCGRG	1 cut(s)	1107
Aor13HI	TCCGGA	2 cut(s)	520, 1126
AoxI	GGCC	9 cut(s)	190, 534, 1098, 1230, 1404, 1418, 1484, 1620, 1626
ApaI	GGGCCC	1 cut(s)	538
ApeKI	GCWGC	3 cut(s)	1353, 1525, 1570
ApoI	RAATTY	2 cut(s)	776, 1531
AspLEI	GCGC	6 cut(s)	266, 488, 787, 841, 1022, 1451
AspS9I	GGNCC	8 cut(s)	534, 535, 556, 610, 756, 847, 898, 1635
AsuC2I	CCSGG	5 cut(s)	896, 1032, 1108, 1109, 1286
AsuHPI	GGTGA	5 cut(s)	34, 631, 982, 1288, 1405
AvaI	CYCGRG	1 cut(s)	1107
AvaII	GGWCC	6 cut(s)	556, 610, 756, 847, 898, 1635
BaeGI	GKGCMC	1 cut(s)	538
BaeI	ACNNNNGTAYC	2 cut(s)	852, 885
BalI	TGGCCA	2 cut(s)	1100, 1622
BamHI	GGATCC	1 cut(s)	1123
BanI	GGYRCC	2 cut(s)	263, 1540
BanII	GRGCYC	4 cut(s)	240, 538, 630, 922
BbrPI	CACGTG	1 cut(s)	123
BbsI	GAAGAC	3 cut(s)	114, 1553, 1583
Bbv12I	GWGCWC	2 cut(s)	240, 922
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	3 cut(s)	1365, 1512, 1557
BccI	CCATC	4 cut(s)	173, 287, 465, 1612
BceAI	ACGGC	9 cut(s)	97, 251, 731, 733, 832, 1014, 1245, 1391, 1429
BcgI	CGANNNNNNTGC	4 cut(s)	425, 431, 459, 465
BciVI	GTATCC	1 cut(s)	1123
BclI	TGATCA	2 cut(s)	804, 1326
BcnI	CCSGG	5 cut(s)	896, 1032, 1108, 1109, 1286
BcoDI	GTCTC	6 cut(s)	205, 313, 395, 948, 989, 1433
BfmI	CTRYAG	1 cut(s)	1513
BfoI	RGCGCY	2 cut(s)	267, 842
BfuAI	ACCTGC	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	1123
BglI	GCCNNNNNGGC	1 cut(s)	1412
BmcAI	AGTACT	1 cut(s)	1511
Bme1390I	CCNGG	5 cut(s)	896, 1032, 1108, 1109, 1286
Bme18I	GGWCC	6 cut(s)	556, 610, 756, 847, 898, 1635
BmeRI	GACNNNNNGTC	4 cut(s)	138, 680, 818, 1159
BmeT110I	CYCGRG	1 cut(s)	1107
BmgBI	CACGTC	5 cut(s)	196, 1117, 1270, 1324, 1474
BmgT120I	GGNCC	8 cut(s)	534, 535, 556, 610, 756, 847, 898, 1635
BmrFI	CCNGG	5 cut(s)	896, 1032, 1108, 1109, 1286
BmrI	ACTGGG	1 cut(s)	670
BmsI	GCATC	4 cut(s)	134, 189, 433, 1269
BmuI	ACTGGG	1 cut(s)	670
BoxI	GACNNNNGTC	1 cut(s)	761
BpiI	GAAGAC	3 cut(s)	114, 1553, 1583
BpmI	CTGGAG	1 cut(s)	742
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	2 cut(s)	1319, 1369
BpuMI	CCSGG	5 cut(s)	896, 1032, 1108, 1109, 1286
BsaAI	YACGTR	2 cut(s)	123, 492
BsaHI	GRCGYC	5 cut(s)	264, 381, 819, 1442, 1580
BsaWI	WCCGGW	3 cut(s)	520, 541, 1126
Bsc4I	CCNNNNNNNGG	7 cut(s)	123, 260, 661, 720, 753, 1107, 1133
Bse118I	RCCGGY	5 cut(s)	679, 841, 1048, 1141, 1262
Bse1I	ACTGG	3 cut(s)	529, 665, 1233
BseAI	TCCGGA	2 cut(s)	520, 1126
BseGI	GGATG	6 cut(s)	32, 180, 219, 457, 473, 1659
BseLI	CCNNNNNNNGG	7 cut(s)	123, 260, 661, 720, 753, 1107, 1133
BseMII	CTCAG	5 cut(s)	376, 942, 1195, 1601, 1637
BseNI	ACTGG	3 cut(s)	529, 665, 1233
BseRI	GAGGAG	7 cut(s)	20, 160, 305, 308, 332, 410, 1580
BseSI	GKGCMC	1 cut(s)	538
BseX3I	CGGCCG	1 cut(s)	1404
BseXI	GCAGC	3 cut(s)	1365, 1512, 1557
BseYI	CCCAGC	1 cut(s)	958
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	8 cut(s)	153, 189, 785, 787, 932, 1022, 1391, 1451
Bsh1285I	CGRYCG	1 cut(s)	1407
BshFI	GGCC	9 cut(s)	192, 536, 1100, 1232, 1406, 1420, 1486, 1622, 1628
BshNI	GGYRCC	2 cut(s)	263, 1540
BsiEI	CGRYCG	1 cut(s)	1407
BsiHKAI	GWGCWC	2 cut(s)	240, 922
BsiHKCI	CYCGRG	1 cut(s)	1107
BsiWI	CGTACG	1 cut(s)	492
BslFI	GGGAC	3 cut(s)	236, 569, 769
BslI	CCNNNNNNNGG	7 cut(s)	123, 260, 661, 720, 753, 1107, 1133
BsmAI	GTCTC	6 cut(s)	205, 313, 395, 948, 989, 1433
BsmBI	CGTCTC	5 cut(s)	205, 313, 395, 989, 1433
BsmFI	GGGAC	3 cut(s)	236, 569, 769
BsnI	GGCC	9 cut(s)	192, 536, 1100, 1232, 1406, 1420, 1486, 1622, 1628
BsoBI	CYCGRG	1 cut(s)	1107
Bsp120I	GGGCCC	1 cut(s)	534
Bsp1286I	GDGCHC	4 cut(s)	240, 538, 630, 922
Bsp13I	TCCGGA	2 cut(s)	520, 1126
Bsp143I	GATC	8 cut(s)	517, 738, 804, 903, 1123, 1302, 1313, 1326
Bsp19I	CCATGG	1 cut(s)	976
BspANI	GGCC	9 cut(s)	192, 536, 1100, 1232, 1406, 1420, 1486, 1622, 1628
BspCNI	CTCAG	5 cut(s)	375, 943, 1194, 1602, 1638
BspEI	TCCGGA	2 cut(s)	520, 1126
BspFNI	CGCG	8 cut(s)	153, 189, 785, 787, 932, 1022, 1391, 1451
BspHI	TCATGA	1 cut(s)	906
BspMAI	CTGCAG	1 cut(s)	1517
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	5 cut(s)	512, 746, 1118, 1131, 1308
BspQI	GCTCTTC	1 cut(s)	635
BspT107I	GGYRCC	2 cut(s)	263, 1540
BsrBI	CCGCTC	2 cut(s)	40, 513
BsrFI	RCCGGY	5 cut(s)	679, 841, 1048, 1141, 1262
BsrI	ACTGG	3 cut(s)	529, 665, 1233
BssAI	RCCGGY	5 cut(s)	679, 841, 1048, 1141, 1262
BssMI	GATC	8 cut(s)	517, 738, 804, 903, 1123, 1302, 1313, 1326
BssNI	GRCGYC	5 cut(s)	264, 381, 819, 1442, 1580
BssT1I	CCWWGG	5 cut(s)	600, 976, 1317, 1623, 1629
Bst4CI	ACNGT	8 cut(s)	76, 140, 307, 643, 1096, 1157, 1250, 1552
Bst6I	CTCTTC	3 cut(s)	350, 398, 635
BstACI	GRCGYC	5 cut(s)	264, 381, 819, 1442, 1580
BstBAI	YACGTR	2 cut(s)	123, 492
BstC8I	GCNNGC	2 cut(s)	930, 1050
BstDEI	CTNAG	6 cut(s)	58, 362, 951, 1181, 1610, 1646
BstDSI	CCRYGG	5 cut(s)	747, 930, 976, 1389, 1407
BstF5I	GGATG	6 cut(s)	32, 180, 219, 457, 473, 1659
BstFNI	CGCG	8 cut(s)	153, 189, 785, 787, 932, 1022, 1391, 1451
BstH2I	RGCGCY	2 cut(s)	267, 842
BstHHI	GCGC	6 cut(s)	266, 488, 787, 841, 1022, 1451
BstKTI	GATC	8 cut(s)	520, 741, 807, 906, 1126, 1305, 1316, 1329
BstMAI	GTCTC	6 cut(s)	205, 313, 395, 948, 989, 1433
BstMBI	GATC	8 cut(s)	517, 738, 804, 903, 1123, 1302, 1313, 1326
BstMCI	CGRYCG	1 cut(s)	1407
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 1412
BstNSI	RCATGY	2 cut(s)	832, 859
BstPAI	GACNNNNGTC	1 cut(s)	761
BstSCI	CCNGG	5 cut(s)	894, 1030, 1106, 1107, 1284
BstSFI	CTRYAG	1 cut(s)	1513
BstSLI	GKGCMC	1 cut(s)	538
BstUI	CGCG	8 cut(s)	153, 189, 785, 787, 932, 1022, 1391, 1451
BstV1I	GCAGC	3 cut(s)	1365, 1512, 1557
BstV2I	GAAGAC	3 cut(s)	114, 1553, 1583
BstX2I	RGATCY	2 cut(s)	1123, 1313
BstXI	CCANNNNNNTGG	2 cut(s)	607, 1630
BstYI	RGATCY	2 cut(s)	1123, 1313
BstZI	CGGCCG	1 cut(s)	1404
BsuI	GTATCC	1 cut(s)	1123
BsuRI	GGCC	9 cut(s)	192, 536, 1100, 1232, 1406, 1420, 1486, 1622, 1628
BtgI	CCRYGG	5 cut(s)	747, 930, 976, 1389, 1407
BtgZI	GCGATG	1 cut(s)	415
BtrI	CACGTC	5 cut(s)	196, 1117, 1270, 1324, 1474
BtsCI	GGATG	6 cut(s)	32, 180, 219, 457, 473, 1659
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	2 cut(s)	536, 613
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	930, 1050
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	6 cut(s)	266, 488, 787, 841, 1022, 1451
Cfr10I	RCCGGY	5 cut(s)	679, 841, 1048, 1141, 1262
Cfr13I	GGNCC	8 cut(s)	534, 535, 556, 610, 756, 847, 898, 1635
Cfr42I	CCGCGG	2 cut(s)	933, 1392
Cfr9I	CCCGGG	1 cut(s)	1107
CseI	GACGC	9 cut(s)	142, 195, 389, 574, 703, 757, 791, 808, 1450
Csp6I	GTAC	6 cut(s)	232, 493, 668, 869, 982, 1510
CviAII	CATG	9 cut(s)	229, 256, 829, 856, 907, 977, 1102, 1240, 1537
CviQI	GTAC	6 cut(s)	232, 493, 668, 869, 982, 1510
DdeI	CTNAG	6 cut(s)	58, 362, 951, 1181, 1610, 1646
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	8 cut(s)	519, 740, 806, 905, 1125, 1304, 1315, 1328
DpnII	GATC	8 cut(s)	517, 738, 804, 903, 1123, 1302, 1313, 1326
DrdI	GACNNNNNNGTC	1 cut(s)	788
DriI	GACNNNNNGTC	4 cut(s)	138, 680, 818, 1159
DseDI	GACNNNNNNGTC	1 cut(s)	788
EaeI	YGGCCR	5 cut(s)	190, 1098, 1230, 1404, 1620
EagI	CGGCCG	1 cut(s)	1404
Eam1104I	CTCTTC	3 cut(s)	350, 398, 635
Eam1105I	GACNNNNNGTC	4 cut(s)	138, 680, 818, 1159
EarI	CTCTTC	3 cut(s)	350, 398, 635
EciI	GGCGGA	3 cut(s)	311, 912, 1495
Ecl136II	GAGCTC	2 cut(s)	238, 920
EclXI	CGGCCG	1 cut(s)	1404
Eco130I	CCWWGG	5 cut(s)	600, 976, 1317, 1623, 1629
Eco147I	AGGCCT	2 cut(s)	1420, 1628
Eco24I	GRGCYC	4 cut(s)	240, 538, 630, 922
Eco47I	GGWCC	6 cut(s)	556, 610, 756, 847, 898, 1635
Eco52I	CGGCCG	1 cut(s)	1404
Eco53kI	GAGCTC	2 cut(s)	238, 920
Eco57I	CTGAAG	2 cut(s)	32, 1091
Eco72I	CACGTG	1 cut(s)	123
Eco88I	CYCGRG	1 cut(s)	1107
EcoICRI	GAGCTC	2 cut(s)	238, 920
EcoO109I	RGGNCCY	2 cut(s)	535, 556
EcoT14I	CCWWGG	5 cut(s)	600, 976, 1317, 1623, 1629
EcoT38I	GRGCYC	4 cut(s)	240, 538, 630, 922
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	5 cut(s)	600, 976, 1317, 1623, 1629
Esp3I	CGTCTC	5 cut(s)	205, 313, 395, 989, 1433
FaeI	CATG	9 cut(s)	232, 259, 832, 859, 910, 980, 1105, 1243, 1540
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	3 cut(s)	236, 569, 769
FatI	CATG	9 cut(s)	228, 255, 828, 855, 906, 976, 1101, 1239, 1536
FauI	CCCGC	9 cut(s)	31, 45, 232, 296, 308, 937, 994, 1181, 1328
FbaI	TGATCA	2 cut(s)	804, 1326
FblI	GTMKAC	3 cut(s)	78, 351, 1583
FokI	GGATG	5 cut(s)	19, 167, 206, 444, 460
FriOI	GRGCYC	4 cut(s)	240, 538, 630, 922
GlaI	GCGC	6 cut(s)	265, 487, 786, 840, 1021, 1450
GsaI	CCCAGC	1 cut(s)	962
GsuI	CTGGAG	1 cut(s)	742
HaeII	RGCGCY	2 cut(s)	267, 842
HaeIII	GGCC	9 cut(s)	192, 536, 1100, 1232, 1406, 1420, 1486, 1622, 1628
HgaI	GACGC	9 cut(s)	142, 195, 389, 574, 703, 757, 791, 808, 1450
HhaI	GCGC	6 cut(s)	266, 488, 787, 841, 1022, 1451
Hin1I	GRCGYC	5 cut(s)	264, 381, 819, 1442, 1580
Hin1II	CATG	9 cut(s)	232, 259, 832, 859, 910, 980, 1105, 1243, 1540
Hin6I	GCGC	6 cut(s)	264, 486, 785, 839, 1020, 1449
HinP1I	GCGC	6 cut(s)	264, 486, 785, 839, 1020, 1449
HincII	GTYRAC	4 cut(s)	352, 646, 990, 1584
HindII	GTYRAC	4 cut(s)	352, 646, 990, 1584
HinfI	GANTC	6 cut(s)	470, 953, 963, 1367, 1594, 1648
HphI	GGTGA	5 cut(s)	34, 631, 982, 1288, 1405
Hpy166II	GTNNAC	9 cut(s)	79, 352, 613, 646, 990, 1114, 1396, 1584, 1638
Hpy188I	TCNGA	9 cut(s)	185, 469, 702, 809, 948, 1184, 1212, 1599, 1653
Hpy188III	TCNNGA	5 cut(s)	521, 901, 907, 1127, 1298
Hpy8I	GTNNAC	9 cut(s)	79, 352, 613, 646, 990, 1114, 1396, 1584, 1638
HpyAV	CCTTC	2 cut(s)	102, 1489
HpyCH4III	ACNGT	8 cut(s)	76, 140, 307, 643, 1096, 1157, 1250, 1552
HpyCH4IV	ACGT	9 cut(s)	122, 195, 491, 762, 1116, 1269, 1323, 1473, 1580
HpyCH4V	TGCA	5 cut(s)	446, 452, 1239, 1282, 1515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 1412
HpyF3I	CTNAG	6 cut(s)	58, 362, 951, 1181, 1610, 1646
HpySE526I	ACGT	9 cut(s)	122, 195, 491, 762, 1116, 1269, 1323, 1473, 1580
Hsp92I	GRCGYC	5 cut(s)	264, 381, 819, 1442, 1580
Hsp92II	CATG	9 cut(s)	232, 259, 832, 859, 910, 980, 1105, 1243, 1540
HspAI	GCGC	6 cut(s)	264, 486, 785, 839, 1020, 1449
KasI	GGCGCC	1 cut(s)	263
KflI	GGGWCCC	1 cut(s)	556
Kpn2I	TCCGGA	2 cut(s)	520, 1126
KroI	GCCGGC	1 cut(s)	1048
KroNI	GCCGGC	1 cut(s)	1050
Ksp22I	TGATCA	2 cut(s)	804, 1326
KspI	CCGCGG	2 cut(s)	933, 1392
Kzo9I	GATC	8 cut(s)	517, 738, 804, 903, 1123, 1302, 1313, 1326
LguI	GCTCTTC	1 cut(s)	635
Lsp1109I	GCAGC	3 cut(s)	1365, 1512, 1557
LweI	GCATC	4 cut(s)	134, 189, 433, 1269
MaeII	ACGT	9 cut(s)	122, 195, 491, 762, 1116, 1269, 1323, 1473, 1580
MaeIII	GTNAC	1 cut(s)	820
MalI	GATC	8 cut(s)	519, 740, 806, 905, 1125, 1304, 1315, 1328
MbiI	CCGCTC	2 cut(s)	40, 513
MboI	GATC	8 cut(s)	517, 738, 804, 903, 1123, 1302, 1313, 1326
MboII	GAAGA	7 cut(s)	119, 337, 385, 622, 1558, 1588, 1603
MflI	RGATCY	2 cut(s)	1123, 1313
MhlI	GDGCHC	4 cut(s)	240, 538, 630, 922
MlsI	TGGCCA	2 cut(s)	1100, 1622
MluCI	AATT	2 cut(s)	776, 1531
MluNI	TGGCCA	2 cut(s)	1100, 1622
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	4 cut(s)	464, 962, 1376, 1657
MmeI	TCCRAC	3 cut(s)	208, 492, 1631
Mox20I	TGGCCA	2 cut(s)	1100, 1622
MroI	TCCGGA	2 cut(s)	520, 1126
MroNI	GCCGGC	1 cut(s)	1048
MscI	TGGCCA	2 cut(s)	1100, 1622
MseI	TTAA	1 cut(s)	1146
MslI	CAYNNNNRTG	1 cut(s)	827
Msp20I	TGGCCA	2 cut(s)	1100, 1622
MspA1I	CMGCKG	2 cut(s)	932, 1391
MspR9I	CCNGG	5 cut(s)	896, 1032, 1108, 1109, 1286
MvnI	CGCG	8 cut(s)	153, 189, 785, 787, 932, 1022, 1391, 1451
MwoI	GCNNNNNNNGC	2 cut(s)	186, 1412
NaeI	GCCGGC	1 cut(s)	1050
NarI	GGCGCC	1 cut(s)	264
NciI	CCSGG	5 cut(s)	896, 1032, 1108, 1109, 1286
NcoI	CCATGG	1 cut(s)	976
NdeII	GATC	8 cut(s)	517, 738, 804, 903, 1123, 1302, 1313, 1326
NgoMIV	GCCGGC	1 cut(s)	1048
NlaIII	CATG	9 cut(s)	232, 259, 832, 859, 910, 980, 1105, 1243, 1540
NmeAIII	GCCGAG	2 cut(s)	30, 156
NmuCI	GTSAC	1 cut(s)	820
NspI	RCATGY	2 cut(s)	832, 859
PagI	TCATGA	1 cut(s)	906
PaqCI	CACCTGC	1 cut(s)	457
PceI	AGGCCT	2 cut(s)	1420, 1628
PciI	ACATGT	1 cut(s)	828
PciSI	GCTCTTC	1 cut(s)	635
PcsI	WCGNNNNNNNCGW	6 cut(s)	201, 438, 869, 1061, 1404, 1448
PdiI	GCCGGC	1 cut(s)	1050
PfeI	GAWTC	2 cut(s)	963, 1594
Pfl23II	CGTACG	1 cut(s)	492
PflFI	GACNNNGTC	1 cut(s)	952
PflMI	CCANNNNNTGG	1 cut(s)	720
PleI	GAGTC	4 cut(s)	464, 961, 1375, 1656
PluTI	GGCGCC	1 cut(s)	267
PmaCI	CACGTG	1 cut(s)	123
PmlI	CACGTG	1 cut(s)	123
PpsI	GAGTC	4 cut(s)	464, 961, 1375, 1656
Ppu21I	YACGTR	2 cut(s)	123, 492
PpuMI	RGGWCCY	1 cut(s)	556
PscI	ACATGT	1 cut(s)	828
PshAI	GACNNNNGTC	1 cut(s)	761
Psp124BI	GAGCTC	2 cut(s)	240, 922
Psp5II	RGGWCCY	1 cut(s)	556
PspCI	CACGTG	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	958
PspLI	CGTACG	1 cut(s)	492
PspOMI	GGGCCC	1 cut(s)	534
PspPI	GGNCC	8 cut(s)	534, 535, 556, 610, 756, 847, 898, 1635
PspPPI	RGGWCCY	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	1517
PsuI	RGATCY	2 cut(s)	1123, 1313
PsyI	GACNNNGTC	1 cut(s)	952
RsaI	GTAC	6 cut(s)	233, 494, 669, 870, 983, 1511
RsaNI	GTAC	6 cut(s)	232, 493, 668, 869, 982, 1510
RseI	CAYNNNNRTG	1 cut(s)	827
SacI	GAGCTC	2 cut(s)	240, 922
SacII	CCGCGG	2 cut(s)	933, 1392
SalI	GTCGAC	2 cut(s)	350, 1582
SapI	GCTCTTC	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	1146
Sau3AI	GATC	8 cut(s)	517, 738, 804, 903, 1123, 1302, 1313, 1326
Sau96I	GGNCC	8 cut(s)	534, 535, 556, 610, 756, 847, 898, 1635
ScaI	AGTACT	1 cut(s)	1511
SchI	GAGTC	4 cut(s)	464, 962, 1376, 1657
ScrFI	CCNGG	5 cut(s)	896, 1032, 1108, 1109, 1286
SduI	GDGCHC	4 cut(s)	240, 538, 630, 922
SfaNI	GCATC	4 cut(s)	134, 189, 433, 1269
SfcI	CTRYAG	1 cut(s)	1513
SfoI	GGCGCC	1 cut(s)	265
Sfr303I	CCGCGG	2 cut(s)	933, 1392
SgrAI	CRCCGGYG	2 cut(s)	841, 1262
SgrBI	CCGCGG	2 cut(s)	933, 1392
SgrDI	CGTCGACG	1 cut(s)	1582
SinI	GGWCC	6 cut(s)	556, 610, 756, 847, 898, 1635
SmaI	CCCGGG	1 cut(s)	1109
SmiMI	CAYNNNNRTG	1 cut(s)	827
SmlI	CTYRAG	2 cut(s)	1298, 1348
SmoI	CTYRAG	2 cut(s)	1298, 1348
Sse9I	AATT	2 cut(s)	776, 1531
SseBI	AGGCCT	2 cut(s)	1420, 1628
SspDI	GGCGCC	1 cut(s)	263
SstI	GAGCTC	2 cut(s)	240, 922
StuI	AGGCCT	2 cut(s)	1420, 1628
StyD4I	CCNGG	5 cut(s)	894, 1030, 1106, 1107, 1284
StyI	CCWWGG	5 cut(s)	600, 976, 1317, 1623, 1629
TaaI	ACNGT	8 cut(s)	76, 140, 307, 643, 1096, 1157, 1250, 1552
TaiI	ACGT	9 cut(s)	125, 198, 494, 765, 1119, 1272, 1326, 1476, 1583
TaqI	TCGA	7 cut(s)	142, 294, 351, 378, 780, 1076, 1583
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	2 cut(s)	776, 1531
TatI	WGTACW	1 cut(s)	1509
TauI	GCSGC	7 cut(s)	71, 192, 516, 746, 928, 935, 1406
TfiI	GAWTC	2 cut(s)	963, 1594
Tru1I	TTAA	1 cut(s)	1146
Tru9I	TTAA	1 cut(s)	1146
TscAI	CASTG	2 cut(s)	536, 620
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	3 cut(s)	1353, 1525, 1570
Tsp45I	GTSAC	1 cut(s)	820
TspDTI	ATGAA	3 cut(s)	622, 1256, 1525
TspGWI	ACGGA	6 cut(s)	193, 238, 377, 1007, 1070, 1505
TspMI	CCCGGG	1 cut(s)	1107
TspRI	CASTG	2 cut(s)	536, 620
Tth111I	GACNNNGTC	1 cut(s)	952
Van91I	CCANNNNNTGG	1 cut(s)	720
VpaK11BI	GGWCC	6 cut(s)	556, 610, 756, 847, 898, 1635
XapI	RAATTY	2 cut(s)	776, 1531
XceI	RCATGY	2 cut(s)	832, 859
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1108
XmaI	CCCGGG	1 cut(s)	1107
XmiI	GTMKAC	3 cut(s)	78, 351, 1583
ZraI	GACGTC	1 cut(s)	1581
ZrmI	AGTACT	1 cut(s)	1511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.