Rorug03G0297100

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012546
Physical Location & Seq
Forward (+)
30669488 .. 30672338
2851 bp
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UTR
Exon/CDS
Intron
Rorug03G0297100.1

Sequence Viewer

Length: 300 bp
ATGCAGCTGACCGTAGAATTCGGTGGAGGATTAGAGCTTCTTTGTAACTCTGTCAAGATTCATAATGTCAATGTAGAACTGCAAAAGGCAGCAGAAAAGTTAACCATGAAAGATTTACTGGCTTGGATTCGTACTAATTTGATCAAGGAGAGGCCTGAAATGTTTATGAAAGGAGATTCTGTGAGACCTGGTGTTCTAGCCCTTGTGAATGATTGTGATTGGGAGCTGACTGGTCAACTTGATACAACACTAGAGGAAAAGGATGTGGTTGTTTTCATTTCAACCTTGCACGGCGGATAG

Protein Analysis

99

Amino Acids

11.06

Weight (kDa)

4.9

Isoelectric Point (pI)

23.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Urm1 PF09138 2 - 99 7.7e-38 Urm1 (Ubiquitin related modifier)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012546)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58090
fragaria_vesca FvH4_4g00080 FvH4_4g00080 FvH4_4g00080 FvH4_4g00080
malus_domestica MD04G1001100.v1.1
prunus_persica Prupe.1G001100_v2.0.a1
pyrus_communis pycom04g00170
rosa_laevigata RLG00000010278
rosa_multiflora Rmu_co8514003.1_g000001
rosa_roxburghii Rroxscaffold_5G00332690
rosa_rugosa Rorug03G0297000 Rorug03G0297100 Rorug03G0297100
rosa_samantha Rh4AG000600 Rh4BG000500 Rh4CG000400 Rh4DG000300
rosa_wichuraiana Rw4G000840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 1 cut(s) 133
AgsI TTSAA 1 cut(s) 282
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 7, 37, 226
AluI AGCT 3 cut(s) 7, 37, 226
Alw26I GTCTC 1 cut(s) 178
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 4, 89
ApoI RAATTY 1 cut(s) 17
BbvI GCAGC 2 cut(s) 16, 101
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 2 cut(s) 197, 251
BisI GCNGC 2 cut(s) 5, 90
BlsI GCNGC 2 cut(s) 6, 91
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bse1I ACTGG 2 cut(s) 123, 235
BseBI CCWGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 268
BseNI ACTGG 2 cut(s) 123, 235
BseXI GCAGC 2 cut(s) 16, 101
BshFI GGCC 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 178
BsnI GGCC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 178
BsrI ACTGG 2 cut(s) 123, 235
BssMI GATC 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 13
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 16, 101
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 268
CsiI ACCWGGT 1 cut(s) 187
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 106
CviJI RGCY 6 cut(s) 7, 37, 122, 154, 200, 226
CviKI_1 RGCY 6 cut(s) 7, 37, 122, 154, 200, 226
CviQI GTAC 1 cut(s) 132
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
Eco147I AGGCCT 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 109
FaiI YATR 3 cut(s) 63, 107, 167
FatI CATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 5, 90
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 2 cut(s) 5, 90
FspBI CTAG 2 cut(s) 197, 251
GluI GCNGC 2 cut(s) 5, 90
HaeIII GGCC 1 cut(s) 154
Hin1II CATG 1 cut(s) 109
HincII GTYRAC 2 cut(s) 102, 236
HindII GTYRAC 2 cut(s) 102, 236
HinfI GANTC 3 cut(s) 58, 127, 176
HpaI GTTAAC 1 cut(s) 102
Hpy166II GTNNAC 2 cut(s) 102, 236
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 2 cut(s) 102, 236
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 3 cut(s) 4, 82, 289
Hsp92II CATG 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 141
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 5 cut(s) 104, 168, 174, 201, 216
Lsp1109I GCAGC 2 cut(s) 16, 101
MabI ACCWGGT 1 cut(s) 187
MaeI CTAG 2 cut(s) 197, 251
MaeIII GTNAC 1 cut(s) 44
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MluCI AATT 2 cut(s) 17, 136
MnlI CCTC 3 cut(s) 20, 144, 247
MseI TTAA 1 cut(s) 101
MspA1I CMGCKG 1 cut(s) 7
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
NdeII GATC 1 cut(s) 141
NlaIII CATG 1 cut(s) 109
PceI AGGCCT 1 cut(s) 154
PfeI GAWTC 3 cut(s) 58, 127, 176
PkrI GCNGC 2 cut(s) 6, 91
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 7
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 2 cut(s) 5, 90
Sau3AI GATC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 189
SetI ASST 5 cut(s) 9, 39, 190, 228, 287
SexAI ACCWGGT 1 cut(s) 187
Sse9I AATT 2 cut(s) 17, 136
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 1 cut(s) 294
SspMI CTAG 2 cut(s) 197, 251
StuI AGGCCT 1 cut(s) 154
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 13
TasI AATT 2 cut(s) 17, 136
TfiI GAWTC 3 cut(s) 58, 127, 176
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseI GCWGC 2 cut(s) 4, 89
TspDTI ATGAA 4 cut(s) 50, 122, 182, 265
XapI RAATTY 1 cut(s) 17
XspI CTAG 2 cut(s) 197, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.