Prupe.1G001100_v2.0.a1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
179494 .. 183844
4351 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G001100.1

Sequence Viewer

Length: 1452 bp
ATGAGGTGGTTTTCAGTGGGTATCAAGGTAGTTTGTTTGGTTTCAATGATGTGCACAGTGAGTGGCATTGGTGCAAACTGGGGCACACAGGCATCCCACCCTCTTCCCCCCGACACTGTAGTTAGGCTGCTGAGAGAAAATGGGATTCGAAAGGTTAAGCTTTTTGATGCGGATTATGACACATTGAGAAGCCTGGGCAAGTCTGAGGGGGTTGAGGTCATGGTTGGTATTCCTAATGATATGCTTGCATCTCTGGCCACCAGCGTTAAGGCTGCTGAGAAATGGGTTTCCAAGAATGTCTCAGCACACGTCTCCTCCAGTAATGTCAAGATCAGGTATGTTGCAGTTGGAAATGAACCTTTCTTGGAAACATACAATGGTAGCTTCCTCAGAACAACCTTCCCTGCTCTGCAGAATGTCCAGTCTGCCCTGATAAAAGCTGGCCTTAGCAACCAAGTAAAGGTGACTGTGCCCCTCAATGCTGATGTCTATGCAAGTTCAAATGGGCTTCCATCAGGTGGCGACTTCCGAACTGATATCCATGGGCTAATGCTTCAAATTGTCAAGTTCTTGAGTGACAATGGTGCCCCCTTCACCGTGAACATTTACCCCTTTATAAGCCTTTACATTGACTCCAACTTCCCTGTTGATTATGCGTTCTTTGATGGAAATGCATCACCTATTACAGATGGTAGTTTAACCTACTACAATATGTTTGATGCAAATTATGATACTCTTGTGTGGGCCTTGCAAAGGAATGGCTTTGGAAACTTACCAATCATAGTTGGAGAGATTGGATGGCCAACAGATGGAGACCAGAATGCTAACATAGTTTATGCTCAGAGGTTCAACCAAGGTTTCATGTCCCACATATTGGGTGGCAGAGGAACCCCAATGAGACCTGGTCCAATTGATGCTTATCTATTCAGTTTGATTGACGAGGATGCTAAAAGCATTGATCCAGGAAATTTTGAACGACACTGGGGAATATTTACTTTTGATGGGATAGCAAAATACCAGCTTAACCTTGGCAGCACAAATTCAGGGTCCTTAGTTCCAGCAAAAGGTGTGCACTATTTGGAGCGCAAGTGGTGTGTGATGAAGCCATCAGCGAACCTTGATGACCCACAAGTAGCACTAAGTGTGAGTTATGCTTGTGGACTTGCCGATTGCACCAGCCTTGGTTACGGAACATCTTGTGGCAGCTTGGATGCTCGAGGAAACATTTCGTATGCGGTTAATAGTTACTACCAGAGGAACAATCAACTTGATGTAGCTTGCAAGTTTCCAAACCTTTCAATGATCACCAAAACGAACCCATCAGTTGGATCTTGCAGATTTGAGATAATGATCGAACCATATTATGGCGGTGCAGGAAGGAGATTCGGGTGCCTCCAAAAGCCTCTAAGCCTGGTTGCACTTATTATTTTCTTTTCGCTAACCGTTGTGTGA

Protein Analysis

484

Amino Acids

52.68

Weight (kDa)

6.6

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012546)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 617
AccB1I GGYRCC 2 cut(s) 584, 1389
AccB7I CCANNNNNTGG 5 cut(s) 518, 809, 874, 1325, 1364
AciI CCGC 3 cut(s) 170, 1235, 1368
AclWI GGATC 2 cut(s) 953, 1336
AcoI YGGCCR 2 cut(s) 255, 800
AcsI RAATTY 2 cut(s) 967, 1039
AdeI CACNNNGTG 1 cut(s) 1142
AfiI CCNNNNNNNGG 8 cut(s) 460, 518, 753, 809, 874, 1064, 1325, 1364
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 6 cut(s) 45, 501, 557, 850, 974, 1299
AjiI CACGTC 1 cut(s) 310
AjnI CCWGG 4 cut(s) 192, 901, 961, 1410
AluBI AGCT 6 cut(s) 160, 384, 440, 1021, 1206, 1277
AluI AGCT 6 cut(s) 160, 384, 440, 1021, 1206, 1277
Alw21I GWGCWC 2 cut(s) 56, 1074
Alw26I GTCTC 4 cut(s) 304, 316, 807, 892
Alw44I GTGCAC 2 cut(s) 52, 1070
AlwI GGATC 2 cut(s) 953, 1336
Ama87I CYCGRG 1 cut(s) 1215
AoxI GGCC 4 cut(s) 255, 442, 744, 800
ApaLI GTGCAC 2 cut(s) 52, 1070
ApeKI GCWGC 4 cut(s) 127, 272, 1032, 1203
ApoI RAATTY 2 cut(s) 967, 1039
ArsI GACNNNNNNTTYG 2 cut(s) 1031, 1063
Asp700I GAANNNNTTC 1 cut(s) 1225
AspLEI GCGC 1 cut(s) 1086
AspS9I GGNCC 3 cut(s) 744, 905, 1047
AsuHPI GGTGA 4 cut(s) 475, 586, 669, 1297
AsuII TTCGAA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 1215
AvaII GGWCC 2 cut(s) 905, 1047
BaeGI GKGCMC 5 cut(s) 56, 86, 474, 589, 1074
BaeI ACNNNNGTAYC 2 cut(s) 723, 756
BalI TGGCCA 2 cut(s) 257, 802
BanI GGYRCC 2 cut(s) 584, 1389
Bbv12I GWGCWC 2 cut(s) 56, 1074
BbvI GCAGC 4 cut(s) 114, 259, 1044, 1215
BccI CCATC 8 cut(s) 520, 659, 683, 792, 803, 995, 1114, 1327
BciT130I CCWGG 4 cut(s) 194, 903, 963, 1412
BclI TGATCA 1 cut(s) 1302
BcoDI GTCTC 4 cut(s) 304, 316, 807, 892
BfmI CTRYAG 2 cut(s) 117, 410
BisI GCNGC 4 cut(s) 128, 273, 1033, 1204
BlsI GCNGC 4 cut(s) 129, 274, 1034, 1205
Bme1390I CCNGG 4 cut(s) 194, 903, 963, 1412
Bme18I GGWCC 2 cut(s) 905, 1047
BmeT110I CYCGRG 1 cut(s) 1215
BmgBI CACGTC 1 cut(s) 310
BmgT120I GGNCC 3 cut(s) 744, 905, 1047
BmiI GGNNCC 4 cut(s) 586, 889, 1048, 1391
BmrFI CCNGG 4 cut(s) 194, 903, 963, 1412
BmrI ACTGGG 2 cut(s) 88, 991
BmsI GCATC 8 cut(s) 101, 157, 257, 683, 709, 904, 934, 1201
BmuI ACTGGG 2 cut(s) 88, 991
BpmI CTGGAG 1 cut(s) 301
Bpu10I CCTNAGC 1 cut(s) 446
Bpu14I TTCGAA 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 592
BsaBI GATNNNNATC 2 cut(s) 918, 1349
BsaI GGTCTC 2 cut(s) 807, 892
BsaJI CCNNGG 5 cut(s) 193, 541, 853, 1027, 1180
BsaXI ACNNNNNCTCC 6 cut(s) 299, 329, 617, 647, 1073, 1103
Bsc4I CCNNNNNNNGG 8 cut(s) 460, 518, 753, 809, 874, 1064, 1325, 1364
Bse1I ACTGG 4 cut(s) 83, 318, 421, 986
Bse8I GATNNNNATC 2 cut(s) 918, 1349
BseBI CCWGG 4 cut(s) 194, 903, 963, 1412
BseDI CCNNGG 5 cut(s) 193, 541, 853, 1027, 1180
BseGI GGATG 4 cut(s) 92, 803, 949, 1216
BseJI GATNNNNATC 2 cut(s) 918, 1349
BseLI CCNNNNNNNGG 8 cut(s) 460, 518, 753, 809, 874, 1064, 1325, 1364
BseMII CTCAG 6 cut(s) 122, 195, 267, 315, 403, 854
BseNI ACTGG 4 cut(s) 83, 318, 421, 986
BseRI GAGGAG 1 cut(s) 304
BseSI GKGCMC 5 cut(s) 56, 86, 474, 589, 1074
BseXI GCAGC 4 cut(s) 114, 259, 1044, 1215
BsgI GTGCAG 1 cut(s) 1392
BshFI GGCC 4 cut(s) 257, 444, 746, 802
BshNI GGYRCC 2 cut(s) 584, 1389
BsiHKAI GWGCWC 2 cut(s) 56, 1074
BsiHKCI CYCGRG 1 cut(s) 1215
BslFI GGGAC 1 cut(s) 850
BslI CCNNNNNNNGG 8 cut(s) 460, 518, 753, 809, 874, 1064, 1325, 1364
BsmAI GTCTC 4 cut(s) 304, 316, 807, 892
BsmBI CGTCTC 1 cut(s) 316
BsmFI GGGAC 1 cut(s) 850
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 4 cut(s) 257, 444, 746, 802
Bso31I GGTCTC 2 cut(s) 807, 892
BsoBI CYCGRG 1 cut(s) 1215
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 5 cut(s) 56, 86, 474, 589, 1074
Bsp143I GATC 5 cut(s) 330, 958, 1302, 1328, 1350
Bsp19I CCATGG 1 cut(s) 541
BspACI CCGC 3 cut(s) 170, 1235, 1368
BspANI GGCC 4 cut(s) 257, 444, 746, 802
BspCNI CTCAG 6 cut(s) 123, 196, 268, 314, 402, 853
BspLI GGNNCC 4 cut(s) 586, 889, 1048, 1391
BspMAI CTGCAG 1 cut(s) 414
BspPI GGATC 2 cut(s) 953, 1336
BspT104I TTCGAA 1 cut(s) 148
BspT107I GGYRCC 2 cut(s) 584, 1389
BspTNI GGTCTC 2 cut(s) 807, 892
BsrI ACTGG 4 cut(s) 83, 318, 421, 986
BssECI CCNNGG 5 cut(s) 193, 541, 853, 1027, 1180
BssMI GATC 5 cut(s) 330, 958, 1302, 1328, 1350
BssT1I CCWWGG 4 cut(s) 541, 853, 1027, 1180
Bst2UI CCWGG 4 cut(s) 194, 903, 963, 1412
Bst4CI ACNGT 5 cut(s) 58, 118, 469, 598, 1444
Bst6I CTCTTC 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 3 cut(s) 246, 442, 1279
BstDSI CCRYGG 1 cut(s) 541
BstENI CCTNNNNNAGG 1 cut(s) 751
BstF5I GGATG 4 cut(s) 92, 803, 949, 1216
BstHHI GCGC 1 cut(s) 1086
BstKTI GATC 5 cut(s) 333, 961, 1305, 1331, 1353
BstMAI GTCTC 4 cut(s) 304, 316, 807, 892
BstMBI GATC 5 cut(s) 330, 958, 1302, 1328, 1350
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 4 cut(s) 194, 903, 963, 1412
BstSCI CCNGG 4 cut(s) 192, 901, 961, 1410
BstSFI CTRYAG 2 cut(s) 117, 410
BstSLI GKGCMC 5 cut(s) 56, 86, 474, 589, 1074
BstV1I GCAGC 4 cut(s) 114, 259, 1044, 1215
BstX2I RGATCY 1 cut(s) 1328
BstYI RGATCY 1 cut(s) 1328
BsuRI GGCC 4 cut(s) 257, 444, 746, 802
BtgI CCRYGG 1 cut(s) 541
BtrI CACGTC 1 cut(s) 310
BtsCI GGATG 4 cut(s) 92, 803, 949, 1216
BtsIMutI CAGTG 4 cut(s) 21, 63, 114, 979
Cac8I GCNNGC 3 cut(s) 246, 442, 1279
CfoI GCGC 1 cut(s) 1086
Cfr13I GGNCC 3 cut(s) 744, 905, 1047
CsiI ACCWGGT 1 cut(s) 901
CviAII CATG 3 cut(s) 220, 542, 862
DpnI GATC 5 cut(s) 332, 960, 1304, 1330, 1352
DpnII GATC 5 cut(s) 330, 958, 1302, 1328, 1350
DraIII CACNNNGTG 1 cut(s) 1142
EaeI YGGCCR 2 cut(s) 255, 800
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 4 cut(s) 541, 853, 1027, 1180
Eco31I GGTCTC 2 cut(s) 807, 892
Eco32I GATATC 1 cut(s) 538
Eco47I GGWCC 2 cut(s) 905, 1047
Eco88I CYCGRG 1 cut(s) 1215
EcoNI CCTNNNNNAGG 1 cut(s) 751
EcoO109I RGGNCCY 1 cut(s) 1047
EcoRII CCWGG 4 cut(s) 192, 901, 961, 1410
EcoRV GATATC 1 cut(s) 538
EcoT14I CCWWGG 4 cut(s) 541, 853, 1027, 1180
EcoT22I ATGCAT 1 cut(s) 676
ErhI CCWWGG 4 cut(s) 541, 853, 1027, 1180
Esp3I CGTCTC 1 cut(s) 316
FaeI CATG 3 cut(s) 223, 545, 865
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 1 cut(s) 850
FatI CATG 3 cut(s) 219, 541, 861
FbaI TGATCA 1 cut(s) 1302
Fnu4HI GCNGC 4 cut(s) 128, 273, 1033, 1204
FokI GGATG 4 cut(s) 79, 810, 956, 1223
Fsp4HI GCNGC 4 cut(s) 128, 273, 1033, 1204
GlaI GCGC 1 cut(s) 1085
GluI GCNGC 4 cut(s) 128, 273, 1033, 1204
GsuI CTGGAG 1 cut(s) 301
HaeIII GGCC 4 cut(s) 257, 444, 746, 802
HhaI GCGC 1 cut(s) 1086
Hin1II CATG 3 cut(s) 223, 545, 865
Hin6I GCGC 1 cut(s) 1084
HinP1I GCGC 1 cut(s) 1084
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 3 cut(s) 145, 632, 1383
HphI GGTGA 4 cut(s) 475, 586, 669, 1297
Hpy166II GTNNAC 4 cut(s) 54, 601, 1072, 1160
Hpy188I TCNGA 4 cut(s) 205, 392, 530, 843
Hpy188III TCNNGA 2 cut(s) 328, 571
Hpy8I GTNNAC 4 cut(s) 54, 601, 1072, 1160
HpyAV CCTTC 3 cut(s) 409, 601, 1371
HpyCH4III ACNGT 5 cut(s) 58, 118, 469, 598, 1444
HpyCH4IV ACGT 1 cut(s) 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 3 cut(s) 223, 545, 865
HspAI GCGC 1 cut(s) 1084
Ksp22I TGATCA 1 cut(s) 1302
Kzo9I GATC 5 cut(s) 330, 958, 1302, 1328, 1350
LmnI GCTCC 1 cut(s) 1081
Lsp1109I GCAGC 4 cut(s) 114, 259, 1044, 1215
LweI GCATC 8 cut(s) 101, 157, 257, 683, 709, 904, 934, 1201
MabI ACCWGGT 1 cut(s) 901
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 4 cut(s) 463, 575, 1184, 1244
MalI GATC 5 cut(s) 332, 960, 1304, 1330, 1352
MboI GATC 5 cut(s) 330, 958, 1302, 1328, 1350
MboII GAAGA 1 cut(s) 95
MfeI CAATTG 1 cut(s) 909
MflI RGATCY 1 cut(s) 1328
MhlI GDGCHC 5 cut(s) 56, 86, 474, 589, 1074
MlsI TGGCCA 2 cut(s) 257, 802
MluCI AATT 5 cut(s) 558, 724, 909, 967, 1039
MluNI TGGCCA 2 cut(s) 257, 802
MlyI GAGTC 1 cut(s) 626
MmeI TCCRAC 4 cut(s) 328, 660, 766, 1306
Mox20I TGGCCA 2 cut(s) 257, 802
Mph1103I ATGCAT 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 1225
MscI TGGCCA 2 cut(s) 257, 802
MseI TTAA 5 cut(s) 156, 267, 698, 1023, 1239
Msp20I TGGCCA 2 cut(s) 257, 802
MspR9I CCNGG 4 cut(s) 194, 903, 963, 1412
MunI CAATTG 1 cut(s) 909
Mva1269I GAATGC 1 cut(s) 826
MvaI CCWGG 4 cut(s) 194, 903, 963, 1412
MwoI GCNNNNNNNGC 1 cut(s) 254
NcoI CCATGG 1 cut(s) 541
NdeII GATC 5 cut(s) 330, 958, 1302, 1328, 1350
NlaIII CATG 3 cut(s) 223, 545, 865
NlaIV GGNNCC 4 cut(s) 586, 889, 1048, 1391
NmuCI GTSAC 2 cut(s) 463, 575
NsiI ATGCAT 1 cut(s) 676
NspV TTCGAA 1 cut(s) 148
PaeR7I CTCGAG 1 cut(s) 1215
PctI GAATGC 1 cut(s) 826
PdmI GAANNNNTTC 1 cut(s) 1225
PfeI GAWTC 2 cut(s) 145, 1383
PflFI GACNNNGTC 1 cut(s) 903
PflMI CCANNNNNTGG 5 cut(s) 518, 809, 874, 1325, 1364
PfoI TCCNGGA 1 cut(s) 961
PkrI GCNGC 4 cut(s) 129, 274, 1034, 1205
PleI GAGTC 1 cut(s) 626
PpsI GAGTC 1 cut(s) 626
PpuMI RGGWCCY 1 cut(s) 1047
PsiI TTATAA 1 cut(s) 617
Psp5II RGGWCCY 1 cut(s) 1047
Psp6I CCWGG 4 cut(s) 192, 901, 961, 1410
PspGI CCWGG 4 cut(s) 192, 901, 961, 1410
PspN4I GGNNCC 4 cut(s) 586, 889, 1048, 1391
PspPI GGNCC 3 cut(s) 744, 905, 1047
PspPPI RGGWCCY 1 cut(s) 1047
PspXI VCTCGAGB 1 cut(s) 1215
PstI CTGCAG 1 cut(s) 414
PsuI RGATCY 1 cut(s) 1328
PsyI GACNNNGTC 1 cut(s) 903
SaqAI TTAA 5 cut(s) 156, 267, 698, 1023, 1239
SatI GCNGC 4 cut(s) 128, 273, 1033, 1204
Sau3AI GATC 5 cut(s) 330, 958, 1302, 1328, 1350
Sau96I GGNCC 3 cut(s) 744, 905, 1047
SchI GAGTC 1 cut(s) 626
ScrFI CCNGG 4 cut(s) 194, 903, 963, 1412
SduI GDGCHC 5 cut(s) 56, 86, 474, 589, 1074
SexAI ACCWGGT 1 cut(s) 901
SfaNI GCATC 8 cut(s) 101, 157, 257, 683, 709, 904, 934, 1201
SfcI CTRYAG 2 cut(s) 117, 410
Sfr274I CTCGAG 1 cut(s) 1215
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 2 cut(s) 905, 1047
SlaI CTCGAG 1 cut(s) 1215
SmlI CTYRAG 2 cut(s) 571, 1215
SmoI CTYRAG 2 cut(s) 571, 1215
Sse9I AATT 5 cut(s) 558, 724, 909, 967, 1039
SsiI CCGC 3 cut(s) 170, 1235, 1368
SspI AATATT 1 cut(s) 990
StyD4I CCNGG 4 cut(s) 192, 901, 961, 1410
StyI CCWWGG 4 cut(s) 541, 853, 1027, 1180
TaaI ACNGT 5 cut(s) 58, 118, 469, 598, 1444
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 148, 1216, 1353
TasI AATT 5 cut(s) 558, 724, 909, 967, 1039
TfiI GAWTC 2 cut(s) 145, 1383
Tru1I TTAA 5 cut(s) 156, 267, 698, 1023, 1239
Tru9I TTAA 5 cut(s) 156, 267, 698, 1023, 1239
TscAI CASTG 4 cut(s) 21, 63, 121, 986
TseFI GTSAC 2 cut(s) 463, 575
TseI GCWGC 4 cut(s) 127, 272, 1032, 1203
Tsp45I GTSAC 2 cut(s) 463, 575
TspDTI ATGAA 3 cut(s) 369, 850, 1115
TspGWI ACGGA 1 cut(s) 1203
TspRI CASTG 4 cut(s) 21, 63, 121, 986
Tth111I GACNNNGTC 1 cut(s) 903
Van91I CCANNNNNTGG 5 cut(s) 518, 809, 874, 1325, 1364
VneI GTGCAC 2 cut(s) 52, 1070
VpaK11BI GGWCC 2 cut(s) 905, 1047
XagI CCTNNNNNAGG 1 cut(s) 751
XapI RAATTY 2 cut(s) 967, 1039
XcmI CCANNNNNNNNNTGG 2 cut(s) 875, 1025
XhoI CTCGAG 1 cut(s) 1215
XmnI GAANNNNTTC 1 cut(s) 1225
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.