Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0018018

Physical Location & Seq

Genomic Coordinates Reverse (-)

812588 .. 814794

Gene Structure 2207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGTGTCAAACCAAGTTGCAGACATTGGCTGTAAACAAGGTTCTGTTGGTGGACACAAGTAGTCAGACAGTAATCGGCAAGCCAATAGTTCCAGATGCAACCGTTCATGCAGTTATTGAGGATCATGCATTAGATGCAAATATACTTGTGTTTAAGAAAAATAGGAGAAAGCGTTACCAGAGGATCAGAGGTCATCCCCAAGTCAAGTTGAAGTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

74

Amino Acids

8.36

Weight (kDa)

10.35

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	7 - 67	9.9e-14	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018018)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00950
malus_domestica	MD05G1339700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0005971
rosa_laevigata	RLG00000009255 RLG00000033578
rosa_roxburghii	Rroxscaffold_3G00225690
rosa_rugosa	Rorug07G0182000
rosa_samantha	Rh2BG450200 Rh2BG450400 Rh2DG460100 Rh2DG460400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	129, 191
AgsI	TTSAA	1 cut(s)	211
AlwI	GGATC	2 cut(s)	129, 191
BmsI	GCATC	2 cut(s)	85, 124
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
BseGI	GGATG	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	121, 183
BspPI	GGATC	2 cut(s)	129, 191
BssMI	GATC	2 cut(s)	121, 183
Bst4CI	ACNGT	2 cut(s)	70, 103
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	2 cut(s)	124, 186
BstMBI	GATC	2 cut(s)	121, 183
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	80
CviAII	CATG	2 cut(s)	107, 125
CviJI	RGCY	2 cut(s)	29, 82
CviKI_1	RGCY	2 cut(s)	29, 82
DpnI	GATC	2 cut(s)	123, 185
DpnII	GATC	2 cut(s)	121, 183
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	2 cut(s)	110, 128
FaiI	YATR	3 cut(s)	108, 126, 143
FatI	CATG	2 cut(s)	106, 124
FokI	GGATG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	110, 128
Hpy166II	GTNNAC	2 cut(s)	34, 52
Hpy188I	TCNGA	2 cut(s)	66, 188
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	2 cut(s)	34, 52
HpyCH4III	ACNGT	2 cut(s)	70, 103
HpyCH4V	TGCA	5 cut(s)	19, 98, 110, 128, 137
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	110, 128
Kzo9I	GATC	2 cut(s)	121, 183
LpnPI	CCDG	2 cut(s)	105, 191
LweI	GCATC	2 cut(s)	85, 124
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	2 cut(s)	123, 185
MboI	GATC	2 cut(s)	121, 183
MnlI	CCTC	3 cut(s)	112, 174, 182
Mph1103I	ATGCAT	1 cut(s)	130
MseI	TTAA	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	2 cut(s)	121, 183
NlaIII	CATG	2 cut(s)	110, 128
NsiI	ATGCAT	1 cut(s)	130
PsrI	GAACNNNNNNTAC	2 cut(s)	24, 56
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	121, 183
SetI	ASST	2 cut(s)	42, 193
SfaNI	GCATC	2 cut(s)	85, 124
TaaI	ACNGT	2 cut(s)	70, 103
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TspDTI	ATGAA	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.