Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0018018

Physical Location & Seq

Genomic Coordinates Forward (+)

63555019 .. 63564733

Gene Structure 9715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG450400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAGATCGAAGTTTGGATACCCAGAAAAACGAAGGGTGGAGATGATATTCCTCGTTACGGCATTAGATGCAAAGGTACTTATTTTTAAGAAAAAGAGGAGAAAGAATTACCGTCGGACCAAAGGTCATCGCCAGGAATTAACCAAGTTGAGGATTATTGATACTCAAGGGATTCAGAAACCAGAACCTGTAGTCACCGAAAAACCTCCGAAGGCATCTGGTAAGCAGCCAGAAAAGGTTGCAGTCGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

84

Amino Acids

9.76

Weight (kDa)

10.74

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	10 - 53	6.5e-11	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018018)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00950
malus_domestica	MD05G1339700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0005971
rosa_laevigata	RLG00000009255 RLG00000033578
rosa_roxburghii	Rroxscaffold_3G00225690
rosa_rugosa	Rorug07G0182000
rosa_samantha	Rh2BG450200 Rh2BG450400 Rh2DG460100 Rh2DG460400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	58, 150
AhdI	GACNNNNNGTC	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	132
AlwNI	CAGNNNCTG	2 cut(s)	188, 248
ApeKI	GCWGC	2 cut(s)	226, 248
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	187
AvaII	GGWCC	1 cut(s)	117
BarI	GAAGNNNNNNTAC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	235, 238
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	134
BciVI	GTATCC	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	189
BfuI	GTATCC	1 cut(s)	11
BisI	GCNGC	2 cut(s)	227, 249
BlsI	GCNGC	2 cut(s)	228, 250
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	117
BmeRI	GACNNNNNGTC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	2 cut(s)	58, 224
BpuEI	CTTGAG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 150
BseBI	CCWGG	1 cut(s)	134
BseLI	CCNNNNNNNGG	2 cut(s)	58, 150
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	235, 238
BslI	CCNNNNNNNGG	2 cut(s)	58, 150
Bsp143I	GATC	1 cut(s)	5
BssMI	GATC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	113
BstAPI	GCANNNNNTGC	2 cut(s)	68, 248
BstKTI	GATC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	5
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 248
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	235, 238
BsuI	GTATCC	1 cut(s)	11
BtgZI	GCGATG	1 cut(s)	113
CaiI	CAGNNNCTG	2 cut(s)	188, 248
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	77
CviJI	RGCY	1 cut(s)	229
CviKI_1	RGCY	1 cut(s)	229
CviQI	GTAC	1 cut(s)	77
DpnI	GATC	1 cut(s)	7
DpnII	GATC	1 cut(s)	5
DriI	GACNNNNNGTC	1 cut(s)	123
Eam1105I	GACNNNNNGTC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	132
FaiI	YATR	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	227, 249
Fsp4HI	GCNGC	2 cut(s)	227, 249
GluI	GCNGC	2 cut(s)	227, 249
HinfI	GANTC	1 cut(s)	172
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	3 cut(s)	117, 177, 210
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	27, 205
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	71, 242, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 248
Kzo9I	GATC	1 cut(s)	5
LpnPI	CCDG	7 cut(s)	36, 119, 146, 195, 201, 204, 243
Lsp1109I	GCAGC	2 cut(s)	235, 238
LweI	GCATC	2 cut(s)	58, 224
MaeIII	GTNAC	2 cut(s)	55, 193
MalI	GATC	1 cut(s)	7
MboI	GATC	1 cut(s)	5
MluCI	AATT	2 cut(s)	106, 137
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	62, 90, 144, 216
MseI	TTAA	2 cut(s)	87, 140
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	68, 248
NdeII	GATC	1 cut(s)	5
NmuCI	GTSAC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	228, 250
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	117
PstNI	CAGNNNCTG	2 cut(s)	188, 248
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	87, 140
SatI	GCNGC	2 cut(s)	227, 249
Sau3AI	GATC	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	5 cut(s)	78, 127, 190, 208, 240
SfaNI	GCATC	2 cut(s)	58, 224
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	106, 137
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	8
TasI	AATT	2 cut(s)	106, 137
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	87, 140
Tru9I	TTAA	2 cut(s)	87, 140
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	226, 248
Tsp45I	GTSAC	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.