Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018018

Physical Location & Seq

Genomic Coordinates Reverse (-)

49791831 .. 49797795

Gene Structure 5965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009255

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTGGAGGGCGGAGGGTATTCAGGTAATATGCGGAACGAGATTTTGGAGGCGCATAGAGGGTCGCTGGGATCTGTTGATATTGAATAAGGTTCTCTTGGTGGGCACAAGTAGTCAGACAATGATCGGCAGGCCAATAGTTCCTGATGCAGCAGTTCATGCAGTTGTTGAAGAGCATGTTAGCATGGACACAGATGAAGTACCTCATCCTCCTCCTAATTTATCTGTTTATCAACCCATGGAAGCAGAATTTCAATGGAATGGCGCCAGTGGAAATGGTCATTTTGCTCAATTCCCATTCTTCACCGCTTCCCAGGCTTCTAATCCTGCCGTTGGTATCCCGCCTTTTTCATTCAACCTGAACCAGTCCGCCGAAGATGTTGCTGATACTTACTATGACGGATATGTCCATAAGTATAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

142

Amino Acids

15.81

Weight (kDa)

5.19

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018018)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00950
malus_domestica	MD05G1339700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0005971
rosa_laevigata	RLG00000009255 RLG00000033578
rosa_roxburghii	Rroxscaffold_3G00225690
rosa_rugosa	Rorug07G0182000
rosa_samantha	Rh2BG450200 Rh2BG450400 Rh2DG460100 Rh2DG460400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	404
AccB1I	GGYRCC	1 cut(s)	263
AciI	CCGC	5 cut(s)	11, 33, 306, 341, 369
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	4 cut(s)	85, 170, 254, 355
AjnI	CCWGG	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	54, 266
AsuHPI	GGTGA	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	314
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	1 cut(s)	314
BciVI	GTATCC	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	347
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	237, 312
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	267, 364
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	237, 312
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	267, 364
BseRI	GAGGAG	1 cut(s)	201
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	66
BshFI	GGCC	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	332
BsnI	GGCC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	70, 123
Bsp19I	CCATGG	1 cut(s)	237
BspACI	CCGC	5 cut(s)	11, 33, 306, 341, 369
BspANI	GGCC	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	267, 364
BssECI	CCNNGG	2 cut(s)	237, 312
BssMI	GATC	2 cut(s)	70, 123
BssNI	GRCGYC	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	131
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	54, 266
BstKTI	GATC	2 cut(s)	73, 126
BstMBI	GATC	2 cut(s)	70, 123
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 314
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	1 cut(s)	131
CfoI	GCGC	2 cut(s)	54, 266
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	4 cut(s)	158, 176, 184, 238
CviJI	RGCY	2 cut(s)	133, 317
CviKI_1	RGCY	2 cut(s)	133, 317
CviQI	GTAC	1 cut(s)	200
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	2 cut(s)	72, 125
DpnII	GATC	2 cut(s)	70, 123
DrdI	GACNNNNNNGTC	1 cut(s)	404
DseDI	GACNNNNNNGTC	1 cut(s)	404
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	2 cut(s)	26, 358
Eco130I	CCWWGG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	4 cut(s)	161, 179, 187, 241
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	4 cut(s)	157, 175, 183, 237
FauI	CCCGC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	150
GlaI	GCGC	2 cut(s)	53, 265
GluI	GCNGC	1 cut(s)	150
GsaI	CCCAGC	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	54, 266
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	4 cut(s)	161, 179, 187, 241
Hin6I	GCGC	2 cut(s)	52, 264
HinP1I	GCGC	2 cut(s)	52, 264
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	143
HpyCH4V	TGCA	2 cut(s)	149, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 314
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	4 cut(s)	161, 179, 187, 241
HspAI	GCGC	2 cut(s)	52, 264
KasI	GGCGCC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	70, 123
LguI	GCTCTTC	1 cut(s)	165
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	136
MalI	GATC	2 cut(s)	72, 125
MboI	GATC	2 cut(s)	70, 123
MboII	GAAGA	3 cut(s)	182, 292, 386
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	3 cut(s)	217, 248, 290
Mly113I	GGCGCC	1 cut(s)	264
MnlI	CCTC	6 cut(s)	7, 42, 52, 213, 219, 222
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	158, 314
NarI	GGCGCC	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	2 cut(s)	70, 123
NlaIII	CATG	4 cut(s)	161, 179, 187, 241
NlaIV	GGNNCC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	179
PciSI	GCTCTTC	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	151
PluTI	GGCGCC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	66
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	165
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	2 cut(s)	70, 123
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	4 cut(s)	27, 93, 205, 360
SfaNI	GCATC	1 cut(s)	136
SfoI	GGCGCC	1 cut(s)	265
Sse9I	AATT	3 cut(s)	217, 248, 290
SsiI	CCGC	5 cut(s)	11, 33, 306, 341, 369
SspDI	GGCGCC	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	237
TasI	AATT	3 cut(s)	217, 248, 290
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	3 cut(s)	146, 210, 339
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	248
XceI	RCATGY	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.