Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0018018

Physical Location & Seq

Genomic Coordinates Forward (+)

46059799 .. 46061333

Gene Structure 1535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1339700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGCCGGTTTTCGCGGTGGTTCAGGTCCGTCTGTAGAGTGGATTATTATCTTTTGGCGTCGAATGAGACTGTTAGATTGGTAGGATTGTTAGTACTGAACAAGGTTCTCATGCTGGGCTCAAGTAGTCAGACAATAATTGGTAGGCCCATATTACCAGATGCAGCAGTTCATGCGGTTGTTGAGGAGCACGTAAGTGTGACAGAATTGTTTCTCTTTTCTTACCGCTGTGTGCGTGAGTGTCACAGTCAAGAAGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

88

Amino Acids

9.99

Weight (kDa)

7.77

Isoelectric Point (pI)

62.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018018)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00950
malus_domestica	MD05G1339700.v1.1
rosa_chinensis	RchiOBHm_Chr5g0005971
rosa_laevigata	RLG00000009255 RLG00000033578
rosa_roxburghii	Rroxscaffold_3G00225690
rosa_rugosa	Rorug07G0182000
rosa_samantha	Rh2BG450200 Rh2BG450400 Rh2DG460100 Rh2DG460400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	16
AciI	CCGC	3 cut(s)	16, 176, 226
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	96
AleI	CACNNNNGTG	1 cut(s)	195
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	164
Asp700I	GAANNNNTTC	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	27, 147
AvaII	GGWCC	1 cut(s)	27
BanII	GRGCYC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	34
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmcAI	AGTACT	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	27, 147
BmsI	GCATC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	6
Bse8I	GATNNNNATC	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	7
BsmAI	GTCTC	1 cut(s)	62
BsnI	GGCC	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	122, 192
BspACI	CCGC	3 cut(s)	16, 176, 226
BspANI	GGCC	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	6
BssAI	RCCGGY	1 cut(s)	6
BssNI	GRCGYC	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	73, 248
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBAI	YACGTR	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	16
BstMAI	GTCTC	1 cut(s)	62
BstMWI	GCNNNNNNNGC	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	27, 147
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	2 cut(s)	112, 173
CviJI	RGCY	3 cut(s)	6, 120, 148
CviKI_1	RGCY	3 cut(s)	6, 120, 148
CviQI	GTAC	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	2 cut(s)	115, 176
FaiI	YATR	3 cut(s)	113, 152, 174
FatI	CATG	2 cut(s)	111, 172
Fnu4HI	GCNGC	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	115, 176
HpaII	CCGG	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	73, 248
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	1 cut(s)	164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	115, 176
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	4 cut(s)	10, 20, 101, 171
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	151
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	199, 242
MhlI	GDGCHC	2 cut(s)	122, 192
MluCI	AATT	2 cut(s)	138, 206
MnlI	CCTC	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	1 cut(s)	173
NlaIII	CATG	2 cut(s)	115, 176
NmuCI	GTSAC	2 cut(s)	199, 242
OliI	CACNNNNGTG	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	27, 147
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	195
SatI	GCNGC	1 cut(s)	165
Sau96I	GGNCC	2 cut(s)	27, 147
ScaI	AGTACT	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	122, 192
SetI	ASST	3 cut(s)	29, 108, 195
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	34
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	2 cut(s)	138, 206
SsiI	CCGC	3 cut(s)	16, 176, 226
TaaI	ACNGT	2 cut(s)	73, 248
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	62
TasI	AATT	2 cut(s)	138, 206
TatI	WGTACW	1 cut(s)	94
TseFI	GTSAC	2 cut(s)	199, 242
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	2 cut(s)	199, 242
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	210
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.