Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0018017

Physical Location & Seq

Genomic Coordinates Forward (+)

1369924 .. 1370859

Gene Structure 936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g01540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTCAGCCATGATGAACGAGTTGGAGAAAGTGAGACTTGAGAGATCATGTGGTATTTACATGGACGAATTTGAGAAAGGTGTTACAGCTATTCGCTTGCCCTGCTTACACATTTTTCATGGAACTTGCATTTTCCGGTGGCTGGAGAAGAATCACAAGTGTCCTTTGTGCCGACATCCACTGCCTCACGATGATGCAGGTCGGTTTTCCTTTAAACCCGACGACAAGGTGATCGTTTACCAGCATTCTTATTATACTGAAATTGAGTCGAAAACATGCACACCGGCTCCATCATCCACGCTTCAGATCCGAATAAATTTCTACAAGTCAAACAAATCTGGTGCATTGTGGACGAATGGTGAATTTCTACGCACATCTACGCCTGATGATGAGCAAATCCATCTCCAAACTGAGCCACAATTACTAACAACTCGTAGTCGTTGCGATCTGCAGCCAACAATGATCTCCCAAGTTCTTAGAAACATGAGTGTGCCACGGCATGATCAGCCACCCATTGTTGCCAAAATATTTGAGACGGTTGCTGATGGTGGTGGTGCTTTTATTAATGTAAACATCTACCATGAGGCATTGAAATTGTTCGATTATAGGGCCTTTGATCGCTGGCATTTCAGAATTAGACGAATTGGGATTGATCGTCCTATCACAGACGAAATCGATGCAAGGGTTGCAAGGGAATTAGCCGAGGAGGAATCATATGGAAAGGCTAGACCTAATCCTGCAACTAAATCAGCCATTGAGGGGTTGGAGAGAGTGAGAGTTGACACGTCCTGTGGTATTTGTATGGACGACTTTGAGGACGGTCTACTAGCTACTCGCTTCCCGTGCTTACACATTTTTCACGGCGACTGCATTCTCCGGTGGCTCGAGACTCATTACAAGTGTCCATTGTGCCGATACCCTTTGCTTTGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

312

Amino Acids

35.98

Weight (kDa)

6.5

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	16 - 58	1.4e-12	Ring finger domain
zf-C3HC4_2	PF13923	17 - 57	4.5e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	17 - 44	9.6e-06	RING-like zinc finger
zf-rbx1	PF12678	28 - 58	8.1e-09	RING-H2 zinc finger domain
zf-C3HC4	PF00097	31 - 57	1.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	263 - 305	9.7e-14	Ring finger domain
zf-C3HC4_2	PF13923	264 - 304	4.4e-12	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	264 - 305	7.1e-07	RING-H2 zinc finger domain
zf-C3HC4	PF00097	264 - 304	7.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	264 - 291	3e-07	RING-like zinc finger
zf-RING_UBOX	PF13445	264 - 302	2.7e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018017)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00060 FvH4_4g01540 FvH4_4g02720
rosa_chinensis	RchiOBHm_Chr4g0388511 RchiOBHm_Chr4g0388871
rosa_multiflora	Rmu_sc0001241.1_g000001 Rmu_sc0002357.1_g000003
rosa_rugosa	Rorug03G0317100 Rorug03G0317200
rosa_samantha	Rh4BG016400 Rh4DG017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	823
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	3 cut(s)	68, 316, 362
AcuI	CTGAAG	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	142, 759
AflIII	ACRYGT	1 cut(s)	783
AgsI	TTSAA	1 cut(s)	592
AjiI	CACGTC	1 cut(s)	786
AluBI	AGCT	2 cut(s)	89, 830
AluI	AGCT	2 cut(s)	89, 830
Alw26I	GTCTC	3 cut(s)	28, 527, 881
AlwI	GGATC	1 cut(s)	301
Ama87I	CYCGRG	1 cut(s)	884
AoxI	GGCC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	3 cut(s)	68, 316, 362
AseI	ATTAAT	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	596
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	241, 371
AvaI	CYCGRG	1 cut(s)	884
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	298, 408, 539
BceAI	ACGGC	2 cut(s)	512, 877
BcgI	CGANNNNNNTGC	2 cut(s)	659, 693
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	3 cut(s)	28, 527, 881
BfaI	CTAG	2 cut(s)	726, 827
BfmI	CTRYAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	1 cut(s)	452
BlsI	GCNGC	1 cut(s)	453
BmeT110I	CYCGRG	1 cut(s)	884
BmgBI	CACGTC	1 cut(s)	786
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	2 cut(s)	184, 667
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	59
Bsa29I	ATCGAT	1 cut(s)	675
BsaJI	CCNNGG	2 cut(s)	494, 702
BsaWI	WCCGGW	2 cut(s)	135, 876
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 759
Bse118I	RCCGGY	1 cut(s)	283
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	2 cut(s)	494, 702
BseGI	GGATG	2 cut(s)	175, 293
BseLI	CCNNNNNNNGG	2 cut(s)	142, 759
BseMII	CTCAG	1 cut(s)	402
BseRI	GAGGAG	1 cut(s)	719
BseXI	GCAGC	1 cut(s)	463
BshFI	GGCC	1 cut(s)	611
BshVI	ATCGAT	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	884
BsiSI	CCGG	3 cut(s)	136, 284, 877
BslI	CCNNNNNNNGG	2 cut(s)	142, 759
BsmAI	GTCTC	3 cut(s)	28, 527, 881
BsmBI	CGTCTC	1 cut(s)	527
BsmI	GAATGC	2 cut(s)	244, 870
BsnI	GGCC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	884
Bsp143I	GATC	8 cut(s)	44, 231, 306, 445, 462, 502, 616, 652
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	1 cut(s)	403
BspDI	ATCGAT	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	288
BspMAI	CTGCAG	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	494, 702
BssMI	GATC	8 cut(s)	44, 231, 306, 445, 462, 502, 616, 652
Bst4CI	ACNGT	2 cut(s)	538, 821
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	98, 623
BstDEI	CTNAG	2 cut(s)	411, 476
BstDSI	CCRYGG	1 cut(s)	494
BstF5I	GGATG	2 cut(s)	175, 293
BstKTI	GATC	8 cut(s)	47, 234, 309, 448, 465, 505, 619, 655
BstMAI	GTCTC	3 cut(s)	28, 527, 881
BstMBI	GATC	8 cut(s)	44, 231, 306, 445, 462, 502, 616, 652
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 505, 686, 843
BstNSI	RCATGY	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	449
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	306
BstYI	RGATCY	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	611
BsuTUI	ATCGAT	1 cut(s)	675
BtgI	CCRYGG	1 cut(s)	494
BtrI	CACGTC	1 cut(s)	786
BtsCI	GGATG	2 cut(s)	175, 293
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	98, 623
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	609
ClaI	ATCGAT	1 cut(s)	675
CviAII	CATG	8 cut(s)	10, 48, 61, 119, 276, 484, 500, 581
DdeI	CTNAG	2 cut(s)	411, 476
DpnI	GATC	8 cut(s)	46, 233, 308, 447, 464, 504, 618, 654
DpnII	GATC	8 cut(s)	44, 231, 306, 445, 462, 502, 616, 652
DraI	TTTAAA	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	884
EcoO109I	RGGNCCY	1 cut(s)	609
Esp3I	CGTCTC	1 cut(s)	527
FaeI	CATG	8 cut(s)	13, 51, 64, 122, 279, 487, 503, 584
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FatI	CATG	8 cut(s)	9, 47, 60, 118, 275, 483, 499, 580
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	823
Fnu4HI	GCNGC	1 cut(s)	452
FokI	GGATG	2 cut(s)	162, 280
Fsp4HI	GCNGC	1 cut(s)	452
FspBI	CTAG	2 cut(s)	726, 827
GluI	GCNGC	1 cut(s)	452
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	611
HapII	CCGG	3 cut(s)	136, 284, 877
Hin1II	CATG	8 cut(s)	13, 51, 64, 122, 279, 487, 503, 584
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	4 cut(s)	151, 266, 710, 889
HpaII	CCGG	3 cut(s)	136, 284, 877
HphI	GGTGA	2 cut(s)	241, 371
Hpy166II	GTNNAC	5 cut(s)	238, 351, 571, 781, 824
Hpy188I	TCNGA	3 cut(s)	306, 311, 632
Hpy188III	TCNNGA	2 cut(s)	188, 886
Hpy8I	GTNNAC	5 cut(s)	238, 351, 571, 781, 824
Hpy99I	CGWCG	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	538, 821
HpyCH4IV	ACGT	1 cut(s)	785
HpyCH4V	TGCA	9 cut(s)	129, 197, 279, 344, 451, 680, 689, 740, 870
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 505, 686, 843
HpyF3I	CTNAG	2 cut(s)	411, 476
HpySE526I	ACGT	1 cut(s)	785
Hsp92II	CATG	8 cut(s)	13, 51, 64, 122, 279, 487, 503, 584
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	8 cut(s)	44, 231, 306, 445, 462, 502, 616, 652
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	2 cut(s)	184, 667
MaeI	CTAG	2 cut(s)	726, 827
MaeII	ACGT	1 cut(s)	785
MaeIII	GTNAC	2 cut(s)	82, 929
MalI	GATC	8 cut(s)	46, 233, 308, 447, 464, 504, 618, 654
MboI	GATC	8 cut(s)	44, 231, 306, 445, 462, 502, 616, 652
MboII	GAAGA	1 cut(s)	160
MflI	RGATCY	1 cut(s)	306
MluCI	AATT	9 cut(s)	68, 261, 316, 362, 419, 593, 633, 642, 695
MlyI	GAGTC	2 cut(s)	275, 883
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	6 cut(s)	195, 577, 697, 700, 751, 808
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	2 cut(s)	213, 564
MslI	CAYNNNNRTG	2 cut(s)	192, 488
MspI	CCGG	3 cut(s)	136, 284, 877
Mva1269I	GAATGC	2 cut(s)	244, 870
MwoI	GCNNNNNNNGC	4 cut(s)	102, 505, 686, 843
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	8 cut(s)	44, 231, 306, 445, 462, 502, 616, 652
NlaIII	CATG	8 cut(s)	13, 51, 64, 122, 279, 487, 503, 584
NlaIV	GGNNCC	1 cut(s)	288
NmeAIII	GCCGAG	1 cut(s)	727
NmuCI	GTSAC	1 cut(s)	929
NspI	RCATGY	1 cut(s)	279
PaeR7I	CTCGAG	1 cut(s)	884
PctI	GAATGC	2 cut(s)	244, 870
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	151, 710
PkrI	GCNGC	1 cut(s)	453
PleI	GAGTC	2 cut(s)	274, 883
PpsI	GAGTC	2 cut(s)	274, 883
PshBI	ATTAAT	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	306
RseI	CAYNNNNRTG	2 cut(s)	192, 488
SaqAI	TTAA	2 cut(s)	213, 564
SatI	GCNGC	1 cut(s)	452
Sau3AI	GATC	8 cut(s)	44, 231, 306, 445, 462, 502, 616, 652
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	2 cut(s)	275, 883
SetI	ASST	7 cut(s)	82, 91, 202, 231, 733, 788, 832
SfaNI	GCATC	2 cut(s)	184, 667
SfcI	CTRYAG	1 cut(s)	449
Sfr274I	CTCGAG	1 cut(s)	884
SlaI	CTCGAG	1 cut(s)	884
SmiMI	CAYNNNNRTG	2 cut(s)	192, 488
SmlI	CTYRAG	2 cut(s)	38, 884
SmoI	CTYRAG	2 cut(s)	38, 884
Sse9I	AATT	9 cut(s)	68, 261, 316, 362, 419, 593, 633, 642, 695
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	2 cut(s)	726, 827
TaaI	ACNGT	2 cut(s)	538, 821
TaiI	ACGT	1 cut(s)	788
TaqI	TCGA	4 cut(s)	269, 600, 675, 885
TasI	AATT	9 cut(s)	68, 261, 316, 362, 419, 593, 633, 642, 695
TfiI	GAWTC	2 cut(s)	151, 710
Tru1I	TTAA	2 cut(s)	213, 564
Tru9I	TTAA	2 cut(s)	213, 564
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	929
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	929
TspDTI	ATGAA	2 cut(s)	29, 107
TspRI	CASTG	1 cut(s)	186
VspI	ATTAAT	1 cut(s)	564
XapI	RAATTY	3 cut(s)	68, 316, 362
XceI	RCATGY	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	760
XhoI	CTCGAG	1 cut(s)	884
XmiI	GTMKAC	1 cut(s)	823
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	2 cut(s)	726, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.