Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018017

Physical Location & Seq

Genomic Coordinates Reverse (-)

3725456 .. 3726151

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36172

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCTCACTTCTTCAGCCCTCCACCCAGCTCCTGAAACTGATGTGAACTTTTGCGGCATGGGCTCGCTCTCTTGGTTTCTCAAACCTATATTCTATATTTCAACGCCTTATTCTGCAAGGAATAAGCTTATGCCTCATCGAACTACTGTTACCAAAATATTCAATAAGCTTACTGCAATGCCTAAGGACGCTAATTTTATCCATGTTGACATATATGATGTGACTGAGCCTGAGCCTGAGCCTAAGCCTAAGCCTGCAACCAGGTCAGTCATGGAGAATGAGTTGGAGAAAGTGAGACTTGATAGATCATGTGGTATTTGCATGGACGTATTTGAGAAAGGTGTTATAGCTATTCGCTTGCCCTGCTTACACATTTTTCATGGAAATTACATTTTCCGGTGGCTGGAGACGGATCATAGGTGTCCTTTGTGCCGAAATCCAATGCCTCACGATGATGCAGATCAGTTTTCCTATGAACCCGACGGCACTAATCCTTCGGTGAACGTATACCAGCATTCTTATTATACTGAAATTGAGTCAATAAGATGCACTCCAGCACCATCATCTATGCTTCAGATCCAATTCAATCTCTACAAGTCAAACCAAGATGGTTTATTGCGGGAGGTCGGTGAAGTTCCACGCACATCTATTGATGCTGGACAAATCTATACCTCGAAACTGAGCCGCAATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

231

Amino Acids

26.47

Weight (kDa)

6.24

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	103 - 145	7e-12	Ring finger domain
zf-C3HC4_2	PF13923	104 - 144	1e-09	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018017)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00060 FvH4_4g01540 FvH4_4g02720
rosa_chinensis	RchiOBHm_Chr4g0388511 RchiOBHm_Chr4g0388871
rosa_multiflora	Rmu_sc0001241.1_g000001 Rmu_sc0002357.1_g000003
rosa_rugosa	Rorug03G0317100 Rorug03G0317200
rosa_samantha	Rh4BG016400 Rh4DG017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	507
AciI	CCGC	3 cut(s)	54, 619, 685
AclWI	GGATC	2 cut(s)	420, 571
AcuI	CTGAAG	1 cut(s)	557
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	3 cut(s)	102, 163, 586
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	4 cut(s)	29, 127, 169, 350
AluI	AGCT	4 cut(s)	29, 127, 169, 350
Alw26I	GTCTC	2 cut(s)	289, 401
AlwI	GGATC	2 cut(s)	420, 571
AlwNI	CAGNNNCTG	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	511, 641
AxyI	CCTNAGG	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	65
BccI	CCATC	2 cut(s)	568, 602
BceAI	ACGGC	1 cut(s)	499
BciT130I	CCWGG	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	289, 401
BisI	GCNGC	2 cut(s)	55, 685
BlsI	GCNGC	2 cut(s)	56, 686
Bme1390I	CCNGG	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	3 cut(s)	445, 536, 643
BpmI	CTGGAG	2 cut(s)	425, 537
Bpu10I	CCTNAGC	4 cut(s)	231, 237, 243, 249
BsaBI	GATNNNNATC	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	266, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	183
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	262
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	4 cut(s)	216, 222, 228, 671
BseYI	CCCAGC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	2 cut(s)	289, 401
BsmBI	CGTCTC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	305, 412, 460, 576
BspACI	CCGC	3 cut(s)	54, 619, 685
BspCNI	CTCAG	4 cut(s)	217, 223, 229, 672
BspPI	GGATC	2 cut(s)	420, 571
BsrDI	GCAATG	1 cut(s)	183
BssMI	GATC	4 cut(s)	305, 412, 460, 576
BssNAI	GTATAC	1 cut(s)	508
Bst1107I	GTATAC	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	65, 255, 359
BstDEI	CTNAG	7 cut(s)	183, 225, 231, 237, 243, 249, 680
BstKTI	GATC	4 cut(s)	308, 415, 463, 579
BstMAI	GTCTC	2 cut(s)	289, 401
BstMBI	GATC	4 cut(s)	305, 412, 460, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 363
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	576
BstZ17I	GTATAC	1 cut(s)	508
Bsu36I	CCTNAGG	1 cut(s)	183
Cac8I	GCNNGC	3 cut(s)	65, 255, 359
CaiI	CAGNNNCTG	1 cut(s)	32
CseI	GACGC	1 cut(s)	197
CsiI	ACCWGGT	1 cut(s)	260
CviAII	CATG	6 cut(s)	58, 203, 271, 309, 322, 380
DdeI	CTNAG	7 cut(s)	183, 225, 231, 237, 243, 249, 680
DpnI	GATC	4 cut(s)	307, 414, 462, 578
DpnII	GATC	4 cut(s)	305, 412, 460, 576
Eco24I	GRGCYC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	557
Eco81I	CCTNAGG	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	6 cut(s)	61, 206, 274, 312, 325, 383
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FatI	CATG	6 cut(s)	57, 202, 270, 308, 321, 379
FauI	CCCGC	1 cut(s)	612
FblI	GTMKAC	1 cut(s)	507
Fnu4HI	GCNGC	2 cut(s)	55, 685
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	2 cut(s)	55, 685
GluI	GCNGC	2 cut(s)	55, 685
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	2 cut(s)	425, 537
HapII	CCGG	1 cut(s)	397
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	6 cut(s)	61, 206, 274, 312, 325, 383
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HindIII	AAGCTT	2 cut(s)	125, 167
HinfI	GANTC	1 cut(s)	536
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	2 cut(s)	511, 641
Hpy166II	GTNNAC	4 cut(s)	46, 208, 502, 508
Hpy188I	TCNGA	1 cut(s)	576
Hpy188III	TCNNGA	2 cut(s)	32, 449
Hpy8I	GTNNAC	4 cut(s)	46, 208, 502, 508
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4IV	ACGT	2 cut(s)	327, 504
HpyCH4V	TGCA	6 cut(s)	116, 176, 257, 321, 458, 549
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 363
HpyF3I	CTNAG	7 cut(s)	183, 225, 231, 237, 243, 249, 680
HpySE526I	ACGT	2 cut(s)	327, 504
Hsp92II	CATG	6 cut(s)	61, 206, 274, 312, 325, 383
Kzo9I	GATC	4 cut(s)	305, 412, 460, 576
LmnI	GCTCC	1 cut(s)	34
LweI	GCATC	3 cut(s)	445, 536, 643
MabI	ACCWGGT	1 cut(s)	260
MaeII	ACGT	2 cut(s)	327, 504
MaeIII	GTNAC	2 cut(s)	148, 220
MalI	GATC	4 cut(s)	307, 414, 462, 578
MboI	GATC	4 cut(s)	305, 412, 460, 576
MboII	GAAGA	1 cut(s)	3
MflI	RGATCY	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	5 cut(s)	193, 385, 531, 581, 688
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	5 cut(s)	29, 144, 456, 616, 682
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	60, 363
NdeII	GATC	4 cut(s)	305, 412, 460, 576
NlaIII	CATG	6 cut(s)	61, 206, 274, 312, 325, 383
NmuCI	GTSAC	1 cut(s)	220
PctI	GAATGC	1 cut(s)	514
PkrI	GCNGC	2 cut(s)	56, 686
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	260
PsrI	GAACNNNNNNTAC	2 cut(s)	133, 165
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	576
RseI	CAYNNNNRTG	1 cut(s)	453
SatI	GCNGC	2 cut(s)	55, 685
Sau3AI	GATC	4 cut(s)	305, 412, 460, 576
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	65
SexAI	ACCWGGT	1 cut(s)	260
SfaNI	GCATC	3 cut(s)	445, 536, 643
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	5 cut(s)	193, 385, 531, 581, 688
SsiI	CCGC	3 cut(s)	54, 619, 685
SspI	AATATT	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	148
TaiI	ACGT	2 cut(s)	330, 507
TaqI	TCGA	2 cut(s)	139, 674
TasI	AATT	5 cut(s)	193, 385, 531, 581, 688
TauI	GCSGC	2 cut(s)	57, 687
TseFI	GTSAC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	368, 489
TspGWI	ACGGA	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.