Rh4DG017300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018017
Physical Location & Seq
Reverse (-)
2709747 .. 2710682
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG017300.1

Sequence Viewer

Length: 284 bp
ATGCCTCATCGAACTACTGTTACCAAAATATTCAATAAGCTTACTGCAATGCCTAAGGACGCTAATTTTATCCATGTTGACATATATGATGTGACTGAGCCTGAGCCTAAGCCTAAGCCTGCAACCAGGATTAGACGTGTTGGAATTGATCGTCCCATCACAGACGAAATCGATGCTAGGGTTGCAAGGGAATTAGCCGAGGAGGAATTATTAGGAAAGCCTAGGCCTAATCCTGCAACTAAATCAGCCATTGAGGGGTTGGAGAGAGTGGAAGTTGATAAGTG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.65

Weight (kDa)

6.74

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 255
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 1 cut(s) 34
AjiI CACGTC 1 cut(s) 137
AjnI CCWGG 1 cut(s) 125
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AoxI GGCC 1 cut(s) 224
AspA2I CCTAGG 1 cut(s) 221
AvrII CCTAGG 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 54
BccI CCATC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 127
BfaI CTAG 2 cut(s) 177, 222
BlnI CCTAGG 1 cut(s) 221
Bme1390I CCNGG 1 cut(s) 127
BmgBI CACGTC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 163
Bpu10I CCTNAGC 3 cut(s) 102, 108, 114
Bsa29I ATCGAT 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 198, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse21I CCTNAGG 1 cut(s) 54
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 127
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 198, 221
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 87, 93
BseRI GAGGAG 1 cut(s) 215
BshFI GGCC 1 cut(s) 226
BshVI ATCGAT 1 cut(s) 171
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 148
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 2 cut(s) 88, 94
BspDI ATCGAT 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 198, 221
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 5 cut(s) 54, 96, 102, 108, 114
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 1 cut(s) 125
Bsu15I ATCGAT 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 54
BsuRI GGCC 1 cut(s) 226
BsuTUI ATCGAT 1 cut(s) 171
BtrI CACGTC 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 120
ClaI ATCGAT 1 cut(s) 171
CseI GACGC 1 cut(s) 68
CviAII CATG 1 cut(s) 74
CviJI RGCY 9 cut(s) 40, 100, 106, 112, 118, 197, 220, 226, 248
CviKI_1 RGCY 9 cut(s) 40, 100, 106, 112, 118, 197, 220, 226, 248
DdeI CTNAG 5 cut(s) 54, 96, 102, 108, 114
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 221
Eco147I AGGCCT 1 cut(s) 226
Eco81I CCTNAGG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 1 cut(s) 77
FaiI YATR 4 cut(s) 75, 83, 85, 87
FaqI GGGAC 1 cut(s) 138
FatI CATG 1 cut(s) 73
FspBI CTAG 2 cut(s) 177, 222
HaeIII GGCC 1 cut(s) 226
HgaI GACGC 1 cut(s) 68
Hin1II CATG 1 cut(s) 77
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HindIII AAGCTT 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 4 cut(s) 47, 122, 185, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 5 cut(s) 54, 96, 102, 108, 114
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 112, 114, 132, 139, 246
LweI GCATC 1 cut(s) 163
MaeI CTAG 2 cut(s) 177, 222
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 2 cut(s) 19, 91
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MluCI AATT 4 cut(s) 64, 144, 191, 206
MmeI TCCRAC 2 cut(s) 121, 240
MnlI CCTC 4 cut(s) 15, 193, 196, 247
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 77
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 91
PceI AGGCCT 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PsrI GAACNNNNNNTAC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 148
ScrFI CCNGG 1 cut(s) 127
SetI ASST 2 cut(s) 42, 139
SfaNI GCATC 1 cut(s) 163
Sse9I AATT 4 cut(s) 64, 144, 191, 206
SseBI AGGCCT 1 cut(s) 226
SspI AATATT 1 cut(s) 30
SspMI CTAG 2 cut(s) 177, 222
StuI AGGCCT 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 139
TaqI TCGA 2 cut(s) 10, 171
TasI AATT 4 cut(s) 64, 144, 191, 206
TseFI GTSAC 1 cut(s) 91
Tsp45I GTSAC 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XmaJI CCTAGG 1 cut(s) 221
XspI CTAG 2 cut(s) 177, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.