Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0018017

Physical Location & Seq

Genomic Coordinates Forward (+)

2477860 .. 2479161

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02720.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGTCAGACTACCACCGCCAGTATTACACCGAAGTTGAGTGGATAGGACGGCCACCCTCCATGGAAACAATTAGCGTCGCTTTGCTTCCCATCCGATTCAGTATCTACATGCCACACCAAGATCCCAAACTCTTTGAATCTGAAACAAGTAGTCTCCTTACGCTTCATCGTGACGAGTTGCCATTAATGCTGTATTGTCTTGGTGCCACTGCTTTGAAGACAATAGGCGACCGTGTTGAACAGTTGTTGAAAGAAGGTTTGTTTTCTCAAGTCTGGTCAGAGTTGAAGAAGTACCATTCGGGGAATGAGAGGCTTGAGTTTACGAAGAAAAGGATCATGAAGGTTCTAGAAAGCCTTATGCCTCTTGCACATGAGAAGCATCGAGACGTTGTTGCCAAAATATTCAATGTGCTTGCTACTATGCCTGAAGACGCTTTTGCTATCAATGTGAACATATATATCGTCACTTGTAATCCTAACCCTAAGCCTGCAACAATGTCAGCCATGGTGAACGAGTTGGAGAAAGTGAGACTTGATAGATCCTGTGGTATTTGCATGGACGAATTTGAGAAAGGTGTTACAGCTATTCGCTTGCCCTGCTTACACATGTTTCATGGAACTTGCATTTTCCGGTGGCTGGAGAAGAATCACAACTGTCCTTTGTGCCGACATCCAATGCCTCACGATGAGTCTTCCTATGAACCTGACGTCACCGTATACCAGCATTCTTATTATACTGAAATTGAGTCAAAAACATGCACACCTTCACCAACATCCCTACTTCAGATCCGATTCAGTCTCTACAAGTCAAATAAATCTTGTTCATTGATGTGGGATGGTAAAGTTCTACGCACATATACGCCTGATGATGAACAAATCCACCTCGAAACTGAGCCACAATTACTTACAATTCCTAGTCGTTGCGAGCTGCAGCCAACTATGATCACCCAAGTTCTTAGAAGCATGAGTGTGCCCCGGCATGAGCAGCCACCCATTGTTGCCAAAATATTTGAGACGGTTGCTGATGGTGACGGTGCTTTGATTAATGCCAACATCTTCCATGAGGCATTGAAATTGTTCGATTTTAGGGCCTATGACCGCTGGTTTTTCAGATTCAGAATTAGATGGTTTGGAATGGATGGTCCCATCACAAACGAAATGTCACACCCCGGTCCCGACGTCGGCGGGTTTAAATACCGGACGCCGATCCCAAGGCGTGAACGAGTGTTACAAAGCGGAATAAAGCAAAAACATTATCTTCTAGGCTCGTCAGCTACCCTTTCCCGGCTCGATCAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

434

Amino Acids

50.13

Weight (kDa)

6.99

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	177 - 223	1.6e-07	RING-H2 zinc finger domain
zf-RING_2	PF13639	181 - 223	1.3e-14	Ring finger domain
zf-C3HC4_2	PF13923	182 - 222	1.7e-11	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	182 - 209	1e-08	RING-like zinc finger
zf-C3HC4	PF00097	182 - 222	3.5e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018017)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00060 FvH4_4g01540 FvH4_4g02720
rosa_chinensis	RchiOBHm_Chr4g0388511 RchiOBHm_Chr4g0388871
rosa_multiflora	Rmu_sc0001241.1_g000001 Rmu_sc0002357.1_g000003
rosa_rugosa	Rorug03G0317100 Rorug03G0317200
rosa_samantha	Rh4BG016400 Rh4DG017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	711, 1182
AccB1I	GGYRCC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	4 cut(s)	16, 1099, 1185, 1236
AclWI	GGATC	5 cut(s)	116, 341, 534, 781, 1201
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	563
AcuI	CTGAAG	2 cut(s)	447, 767
AcyI	GRCGYC	3 cut(s)	708, 1179, 1202
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	3 cut(s)	637, 1181, 1284
AflIII	ACRYGT	1 cut(s)	606
AgsI	TTSAA	7 cut(s)	137, 217, 239, 250, 286, 406, 1072
AluBI	AGCT	3 cut(s)	584, 928, 1274
AluI	AGCT	3 cut(s)	584, 928, 1274
Alw26I	GTCTC	5 cut(s)	158, 378, 523, 803, 1007
AlwI	GGATC	5 cut(s)	116, 341, 534, 781, 1201
AoxI	GGCC	2 cut(s)	50, 1089
ApeKI	GCWGC	3 cut(s)	928, 931, 985
ApoI	RAATTY	1 cut(s)	563
ArsI	GACNNNNNNTTYG	2 cut(s)	1145, 1177
AseI	ATTAAT	2 cut(s)	185, 1044
Asp700I	GAANNNNTTC	1 cut(s)	1076
AspS9I	GGNCC	3 cut(s)	1089, 1142, 1172
AsuC2I	CCSGG	3 cut(s)	976, 1170, 1285
AsuHPI	GGTGA	5 cut(s)	520, 703, 759, 937, 1040
AvaII	GGWCC	2 cut(s)	1142, 1172
BaeGI	GKGCMC	1 cut(s)	975
BanI	GGYRCC	1 cut(s)	203
BbsI	GAAGAC	3 cut(s)	224, 435, 684
BbvI	GCAGC	3 cut(s)	915, 943, 997
BccI	CCATC	6 cut(s)	98, 830, 1019, 1119, 1133, 1154
BceAI	ACGGC	1 cut(s)	65
BclI	TGATCA	1 cut(s)	942
BcnI	CCSGG	3 cut(s)	976, 1170, 1285
BcoDI	GTCTC	5 cut(s)	158, 378, 523, 803, 1007
BfaI	CTAG	3 cut(s)	347, 915, 1262
BfmI	CTRYAG	1 cut(s)	929
BisI	GCNGC	3 cut(s)	929, 932, 986
BlsI	GCNGC	3 cut(s)	930, 933, 987
Bme1390I	CCNGG	3 cut(s)	976, 1170, 1285
Bme18I	GGWCC	2 cut(s)	1142, 1172
BmgT120I	GGNCC	3 cut(s)	1089, 1142, 1172
BmiI	GGNNCC	3 cut(s)	205, 1144, 1174
BmrFI	CCNGG	3 cut(s)	976, 1170, 1285
BmsI	GCATC	1 cut(s)	388
BpiI	GAAGAC	3 cut(s)	224, 435, 684
BpmI	CTGGAG	1 cut(s)	659
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	2 cut(s)	252, 335
BpuMI	CCSGG	3 cut(s)	976, 1170, 1285
BsaHI	GRCGYC	3 cut(s)	708, 1179, 1202
BsaJI	CCNNGG	5 cut(s)	60, 504, 974, 1168, 1211
BsaWI	WCCGGW	2 cut(s)	630, 1197
Bsc4I	CCNNNNNNNGG	3 cut(s)	637, 1181, 1284
Bse1I	ACTGG	1 cut(s)	19
BseDI	CCNNGG	5 cut(s)	60, 504, 974, 1168, 1211
BseGI	GGATG	5 cut(s)	90, 670, 773, 841, 1144
BseLI	CCNNNNNNNGG	3 cut(s)	637, 1181, 1284
BseMII	CTCAG	1 cut(s)	882
BseNI	ACTGG	1 cut(s)	19
BseSI	GKGCMC	1 cut(s)	975
BseXI	GCAGC	3 cut(s)	915, 943, 997
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	52, 1091
BshNI	GGYRCC	1 cut(s)	203
BsiEI	CGRYCG	1 cut(s)	232
BsiSI	CCGG	5 cut(s)	631, 976, 1170, 1198, 1285
BslFI	GGGAC	2 cut(s)	1128, 1158
BslI	CCNNNNNNNGG	3 cut(s)	637, 1181, 1284
BsmAI	GTCTC	5 cut(s)	158, 378, 523, 803, 1007
BsmBI	CGTCTC	2 cut(s)	378, 1007
BsmFI	GGGAC	2 cut(s)	1128, 1158
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	2 cut(s)	52, 1091
Bsp1286I	GDGCHC	1 cut(s)	975
Bsp143I	GATC	7 cut(s)	121, 333, 539, 786, 942, 1206, 1291
Bsp19I	CCATGG	2 cut(s)	60, 504
BspACI	CCGC	4 cut(s)	16, 1099, 1185, 1236
BspANI	GGCC	2 cut(s)	52, 1091
BspCNI	CTCAG	1 cut(s)	883
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	3 cut(s)	205, 1144, 1174
BspMAI	CTGCAG	1 cut(s)	933
BspPI	GGATC	5 cut(s)	116, 341, 534, 781, 1201
BspT107I	GGYRCC	1 cut(s)	203
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	5 cut(s)	60, 504, 974, 1168, 1211
BssMI	GATC	7 cut(s)	121, 333, 539, 786, 942, 1206, 1291
BssNAI	GTATAC	1 cut(s)	718
BssNI	GRCGYC	3 cut(s)	708, 1179, 1202
BssT1I	CCWWGG	3 cut(s)	60, 504, 1211
Bst1107I	GTATAC	1 cut(s)	718
Bst4CI	ACNGT	6 cut(s)	233, 243, 656, 715, 1018, 1034
BstACI	GRCGYC	3 cut(s)	708, 1179, 1202
BstC8I	GCNNGC	4 cut(s)	414, 489, 593, 926
BstDEI	CTNAG	3 cut(s)	483, 891, 956
BstDSI	CCRYGG	2 cut(s)	60, 504
BstF5I	GGATG	5 cut(s)	90, 670, 773, 841, 1144
BstKTI	GATC	7 cut(s)	124, 336, 542, 789, 945, 1209, 1294
BstMAI	GTCTC	5 cut(s)	158, 378, 523, 803, 1007
BstMBI	GATC	7 cut(s)	121, 333, 539, 786, 942, 1206, 1291
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	3 cut(s)	187, 597, 985
BstNSI	RCATGY	3 cut(s)	112, 610, 759
BstSCI	CCNGG	3 cut(s)	974, 1168, 1283
BstSFI	CTRYAG	1 cut(s)	929
BstSLI	GKGCMC	1 cut(s)	975
BstV1I	GCAGC	3 cut(s)	915, 943, 997
BstV2I	GAAGAC	3 cut(s)	224, 435, 684
BstX2I	RGATCY	3 cut(s)	121, 539, 786
BstYI	RGATCY	3 cut(s)	121, 539, 786
BstZ17I	GTATAC	1 cut(s)	718
BsuRI	GGCC	2 cut(s)	52, 1091
BtgI	CCRYGG	2 cut(s)	60, 504
BtsCI	GGATG	5 cut(s)	90, 670, 773, 841, 1144
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	4 cut(s)	414, 489, 593, 926
CciI	TCATGA	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	1089, 1142, 1172
CseI	GACGC	3 cut(s)	64, 440, 1210
Csp6I	GTAC	1 cut(s)	292
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	3 cut(s)	483, 891, 956
DpnI	GATC	7 cut(s)	123, 335, 541, 788, 944, 1208, 1293
DpnII	GATC	7 cut(s)	121, 333, 539, 786, 942, 1206, 1291
DraI	TTTAAA	1 cut(s)	1192
EaeI	YGGCCR	1 cut(s)	50
Eco130I	CCWWGG	3 cut(s)	60, 504, 1211
Eco47I	GGWCC	2 cut(s)	1142, 1172
Eco57I	CTGAAG	2 cut(s)	447, 767
EcoO109I	RGGNCCY	1 cut(s)	1089
EcoT14I	CCWWGG	3 cut(s)	60, 504, 1211
ErhI	CCWWGG	3 cut(s)	60, 504, 1211
Esp3I	CGTCTC	2 cut(s)	378, 1007
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	2 cut(s)	1128, 1158
FauI	CCCGC	1 cut(s)	1178
FbaI	TGATCA	1 cut(s)	942
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	3 cut(s)	929, 932, 986
FokI	GGATG	5 cut(s)	77, 657, 760, 848, 1151
Fsp4HI	GCNGC	3 cut(s)	929, 932, 986
FspBI	CTAG	3 cut(s)	347, 915, 1262
GluI	GCNGC	3 cut(s)	929, 932, 986
GsuI	CTGGAG	1 cut(s)	659
HaeIII	GGCC	2 cut(s)	52, 1091
HapII	CCGG	5 cut(s)	631, 976, 1170, 1198, 1285
HgaI	GACGC	3 cut(s)	64, 440, 1210
Hin1I	GRCGYC	3 cut(s)	708, 1179, 1202
HinfI	GANTC	7 cut(s)	96, 137, 646, 689, 746, 792, 1113
HpaII	CCGG	5 cut(s)	631, 976, 1170, 1198, 1285
HphI	GGTGA	5 cut(s)	520, 703, 759, 937, 1040
Hpy166II	GTNNAC	5 cut(s)	321, 451, 511, 718, 1220
Hpy188I	TCNGA	8 cut(s)	7, 95, 142, 280, 786, 791, 1112, 1118
Hpy188III	TCNNGA	6 cut(s)	170, 337, 347, 383, 683, 1175
Hpy8I	GTNNAC	5 cut(s)	321, 451, 511, 718, 1220
Hpy99I	CGWCG	3 cut(s)	80, 1181, 1184
HpyAV	CCTTC	3 cut(s)	248, 334, 774
HpyCH4III	ACNGT	6 cut(s)	233, 243, 656, 715, 1018, 1034
HpyCH4IV	ACGT	3 cut(s)	387, 708, 1179
HpyCH4V	TGCA	6 cut(s)	368, 491, 555, 624, 759, 931
HpyF10VI	GCNNNNNNNGC	3 cut(s)	187, 597, 985
HpyF3I	CTNAG	3 cut(s)	483, 891, 956
HpySE526I	ACGT	3 cut(s)	387, 708, 1179
Hsp92I	GRCGYC	3 cut(s)	708, 1179, 1202
Ksp22I	TGATCA	1 cut(s)	942
Kzo9I	GATC	7 cut(s)	121, 333, 539, 786, 942, 1206, 1291
Lsp1109I	GCAGC	3 cut(s)	915, 943, 997
LweI	GCATC	1 cut(s)	388
MaeI	CTAG	3 cut(s)	347, 915, 1262
MaeII	ACGT	3 cut(s)	387, 708, 1179
MaeIII	GTNAC	7 cut(s)	170, 463, 577, 709, 1028, 1161, 1227
MalI	GATC	7 cut(s)	123, 335, 541, 788, 944, 1208, 1293
MboI	GATC	7 cut(s)	121, 333, 539, 786, 942, 1206, 1291
MboII	GAAGA	8 cut(s)	229, 298, 337, 440, 655, 684, 1048, 1250
MflI	RGATCY	3 cut(s)	121, 539, 786
MhlI	GDGCHC	1 cut(s)	975
MluCI	AATT	7 cut(s)	69, 563, 741, 899, 909, 1073, 1119
MlyI	GAGTC	2 cut(s)	698, 755
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	6 cut(s)	67, 303, 372, 690, 893, 1057
MroXI	GAANNNNTTC	1 cut(s)	1076
MseI	TTAA	3 cut(s)	185, 1044, 1191
MslI	CAYNNNNRTG	2 cut(s)	829, 968
MspA1I	CMGCKG	1 cut(s)	1101
MspI	CCGG	5 cut(s)	631, 976, 1170, 1198, 1285
MspR9I	CCNGG	3 cut(s)	976, 1170, 1285
Mva1269I	GAATGC	1 cut(s)	724
MwoI	GCNNNNNNNGC	3 cut(s)	187, 597, 985
NciI	CCSGG	3 cut(s)	976, 1170, 1285
NcoI	CCATGG	2 cut(s)	60, 504
NdeII	GATC	7 cut(s)	121, 333, 539, 786, 942, 1206, 1291
NlaIV	GGNNCC	3 cut(s)	205, 1144, 1174
NmuCI	GTSAC	5 cut(s)	170, 463, 709, 1028, 1161
NspI	RCATGY	3 cut(s)	112, 610, 759
PagI	TCATGA	1 cut(s)	336
PciI	ACATGT	1 cut(s)	606
PctI	GAATGC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	1076
PfeI	GAWTC	5 cut(s)	96, 137, 646, 792, 1113
PkrI	GCNGC	3 cut(s)	930, 933, 987
PleI	GAGTC	2 cut(s)	697, 754
PpsI	GAGTC	2 cut(s)	697, 754
PscI	ACATGT	1 cut(s)	606
PshBI	ATTAAT	2 cut(s)	185, 1044
PspN4I	GGNNCC	3 cut(s)	205, 1144, 1174
PspPI	GGNCC	3 cut(s)	1089, 1142, 1172
PsrI	GAACNNNNNNTAC	2 cut(s)	1212, 1244
PstI	CTGCAG	1 cut(s)	933
PsuI	RGATCY	3 cut(s)	121, 539, 786
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	2 cut(s)	829, 968
SaqAI	TTAA	3 cut(s)	185, 1044, 1191
SatI	GCNGC	3 cut(s)	929, 932, 986
Sau3AI	GATC	7 cut(s)	121, 333, 539, 786, 942, 1206, 1291
Sau96I	GGNCC	3 cut(s)	1089, 1142, 1172
SchI	GAGTC	2 cut(s)	698, 755
ScrFI	CCNGG	3 cut(s)	976, 1170, 1285
SduI	GDGCHC	1 cut(s)	975
SfaNI	GCATC	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	929
SinI	GGWCC	2 cut(s)	1142, 1172
SmiMI	CAYNNNNRTG	2 cut(s)	829, 968
SmlI	CTYRAG	2 cut(s)	267, 314
SmoI	CTYRAG	2 cut(s)	267, 314
Sse9I	AATT	7 cut(s)	69, 563, 741, 899, 909, 1073, 1119
SsiI	CCGC	4 cut(s)	16, 1099, 1185, 1236
SspI	AATATT	2 cut(s)	402, 1008
SspMI	CTAG	3 cut(s)	347, 915, 1262
StyD4I	CCNGG	3 cut(s)	974, 1168, 1283
StyI	CCWWGG	3 cut(s)	60, 504, 1211
TaaI	ACNGT	6 cut(s)	233, 243, 656, 715, 1018, 1034
TaiI	ACGT	3 cut(s)	390, 711, 1182
TaqI	TCGA	4 cut(s)	382, 885, 1080, 1290
TasI	AATT	7 cut(s)	69, 563, 741, 899, 909, 1073, 1119
TfiI	GAWTC	5 cut(s)	96, 137, 646, 792, 1113
Tru1I	TTAA	3 cut(s)	185, 1044, 1191
Tru9I	TTAA	3 cut(s)	185, 1044, 1191
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	5 cut(s)	170, 463, 709, 1028, 1161
TseI	GCWGC	3 cut(s)	928, 931, 985
Tsp45I	GTSAC	5 cut(s)	170, 463, 709, 1028, 1161
TspDTI	ATGAA	6 cut(s)	155, 353, 602, 714, 813, 885
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	2 cut(s)	1142, 1172
VspI	ATTAAT	2 cut(s)	185, 1044
XapI	RAATTY	1 cut(s)	563
XbaI	TCTAGA	1 cut(s)	346
XceI	RCATGY	3 cut(s)	112, 610, 759
XmiI	GTMKAC	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	1076
XspI	CTAG	3 cut(s)	347, 915, 1262
ZraI	GACGTC	2 cut(s)	709, 1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.