Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0018017

Physical Location & Seq

Genomic Coordinates Reverse (-)

34254739 .. 34255570

Gene Structure 832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0317100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAATGAAAAGCCAGAATGGATAGAGAGATTTTTAGAAAGTAGTTTCTTTGGGAGCTGTTCAGCTCATCCTATTCACGGGAACCAGTTGAACCGGTACTGCACCACCTGCAATCTCTCAGGTTGCCAGTACTGTATGGCATCAGGCCGGCAGCACCGCCACCATGACATATTAAAAATTTACAGACACGTTTATCAGGACGCTGTCTTACTCTCTGAAATGGATGAATATTTGGACTGTACACAAATTTTGCCTTACAAGTCCAACCAATCGCTGGTTATAGCATTGAAGCCTCTGCCGCATTTGGGTGGAGCAAGCAAGTATTCCTGCAAAACATGTACACGACGGGTGACGTACCCGTACTCATACTGTTGCCTCCATTGCAAGGTGGTGGCCTTATCGAGCATGTCAAGCGTTTCCTCATCAGCTACTCCATTGCTTCGTGACCAGACTAGTCCCAACAAGCAAAAGAAAAAGAGGGTTGCCGCCAAACCCCAGAGCTCACTTCACAGACGAAAGGGAAAACCTTTCAGAGCTCCCTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

182

Amino Acids

20.77

Weight (kDa)

9.49

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLATZ	PF04640	62 - 130	3.1e-15	PLATZ transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018017)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g00060 FvH4_4g01540 FvH4_4g02720
rosa_chinensis	RchiOBHm_Chr4g0388511 RchiOBHm_Chr4g0388871
rosa_multiflora	Rmu_sc0001241.1_g000001 Rmu_sc0002357.1_g000003
rosa_rugosa	Rorug03G0317100 Rorug03G0317200
rosa_samantha	Rh4BG016400 Rh4DG017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	116
Acc36I	ACCTGC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	274
AciI	CCGC	3 cut(s)	157, 299, 486
AcsI	RAATTY	2 cut(s)	177, 246
AfaI	GTAC	6 cut(s)	98, 131, 241, 340, 356, 362
AfiI	CCNNNNNNNGG	4 cut(s)	77, 274, 305, 385
AflIII	ACRYGT	2 cut(s)	187, 335
AgeI	ACCGGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	91, 289
AhlI	ACTAGT	1 cut(s)	452
AluBI	AGCT	5 cut(s)	57, 65, 428, 501, 536
AluI	AGCT	5 cut(s)	57, 65, 428, 501, 536
Alw21I	GWGCWC	2 cut(s)	503, 538
AoxI	GGCC	2 cut(s)	145, 393
ApeKI	GCWGC	1 cut(s)	151
ApoI	RAATTY	2 cut(s)	177, 246
AsiGI	ACCGGT	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	361
BanII	GRGCYC	2 cut(s)	503, 538
Bbv12I	GWGCWC	2 cut(s)	503, 538
BbvI	GCAGC	1 cut(s)	163
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	116
BisI	GCNGC	3 cut(s)	152, 299, 486
BlsI	GCNGC	3 cut(s)	153, 300, 487
BmcAI	AGTACT	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	83
BmsI	GCATC	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 274, 305, 385
Bse118I	RCCGGY	2 cut(s)	93, 147
Bse1I	ACTGG	2 cut(s)	85, 127
Bse3DI	GCAATG	2 cut(s)	379, 434
BseGI	GGATG	2 cut(s)	67, 229
BseLI	CCNNNNNNNGG	4 cut(s)	77, 274, 305, 385
BseMI	GCAATG	2 cut(s)	379, 434
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	85, 127
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	147, 395
BshTI	ACCGGT	1 cut(s)	93
BsiHKAI	GWGCWC	2 cut(s)	503, 538
BsiSI	CCGG	2 cut(s)	94, 148
BslFI	GGGAC	1 cut(s)	441
BslI	CCNNNNNNNGG	4 cut(s)	77, 274, 305, 385
BsmFI	GGGAC	1 cut(s)	441
BsnI	GGCC	2 cut(s)	147, 395
Bsp1286I	GDGCHC	2 cut(s)	503, 538
Bsp1407I	TGTACA	2 cut(s)	239, 338
BspACI	CCGC	3 cut(s)	157, 299, 486
BspANI	GGCC	2 cut(s)	147, 395
BspCNI	CTCAG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	116
BsrDI	GCAATG	2 cut(s)	379, 434
BsrFI	RCCGGY	2 cut(s)	93, 147
BsrGI	TGTACA	2 cut(s)	239, 338
BsrI	ACTGG	2 cut(s)	85, 127
BssAI	RCCGGY	2 cut(s)	93, 147
Bst4CI	ACNGT	3 cut(s)	134, 239, 371
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstAUI	TGTACA	2 cut(s)	239, 338
BstC8I	GCNNGC	2 cut(s)	149, 316
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	67, 229
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 298, 381, 411
BstNSI	RCATGY	2 cut(s)	339, 409
BstV1I	GCAGC	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	147, 395
BtsCI	GGATG	2 cut(s)	67, 229
BveI	ACCTGC	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	149, 316
Cfr10I	RCCGGY	2 cut(s)	93, 147
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	6 cut(s)	97, 130, 240, 339, 355, 361
CspAI	ACCGGT	1 cut(s)	93
CviAII	CATG	3 cut(s)	164, 336, 406
CviJI	RGCY	9 cut(s)	13, 57, 65, 147, 292, 395, 428, 501, 536
CviKI_1	RGCY	9 cut(s)	13, 57, 65, 147, 292, 395, 428, 501, 536
CviQI	GTAC	6 cut(s)	97, 130, 240, 339, 355, 361
DdeI	CTNAG	1 cut(s)	118
Ecl136II	GAGCTC	2 cut(s)	501, 536
Eco24I	GRGCYC	2 cut(s)	503, 538
Eco53kI	GAGCTC	2 cut(s)	501, 536
EcoICRI	GAGCTC	2 cut(s)	501, 536
EcoT38I	GRGCYC	2 cut(s)	503, 538
FaeI	CATG	3 cut(s)	167, 339, 409
FaiI	YATR	7 cut(s)	137, 165, 170, 281, 337, 367, 407
FaqI	GGGAC	1 cut(s)	441
FatI	CATG	3 cut(s)	163, 335, 405
Fnu4HI	GCNGC	3 cut(s)	152, 299, 486
FokI	GGATG	2 cut(s)	54, 236
FriOI	GRGCYC	2 cut(s)	503, 538
Fsp4HI	GCNGC	3 cut(s)	152, 299, 486
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	3 cut(s)	152, 299, 486
HaeIII	GGCC	2 cut(s)	147, 395
HapII	CCGG	2 cut(s)	94, 148
HgaI	GACGC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	167, 339, 409
HpaII	CCGG	2 cut(s)	94, 148
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	2 cut(s)	242, 341
Hpy188I	TCNGA	3 cut(s)	217, 533, 548
Hpy188III	TCNNGA	2 cut(s)	197, 443
Hpy8I	GTNNAC	2 cut(s)	242, 341
Hpy99I	CGWCG	1 cut(s)	348
HpyCH4III	ACNGT	3 cut(s)	134, 239, 371
HpyCH4IV	ACGT	2 cut(s)	189, 353
HpyCH4V	TGCA	4 cut(s)	102, 111, 330, 384
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 298, 381, 411
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	2 cut(s)	189, 353
Hsp92II	CATG	3 cut(s)	167, 339, 409
KroI	GCCGGC	1 cut(s)	147
KroNI	GCCGGC	1 cut(s)	149
LmnI	GCTCC	3 cut(s)	54, 311, 541
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	2 cut(s)	189, 353
MaeIII	GTNAC	2 cut(s)	349, 443
MhlI	GDGCHC	2 cut(s)	503, 538
MluCI	AATT	2 cut(s)	177, 246
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	4 cut(s)	303, 386, 430, 471
MroNI	GCCGGC	1 cut(s)	147
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	2 cut(s)	94, 148
MwoI	GCNNNNNNNGC	4 cut(s)	108, 298, 381, 411
NaeI	GCCGGC	1 cut(s)	149
NgoMIV	GCCGGC	1 cut(s)	147
NlaIII	CATG	3 cut(s)	167, 339, 409
NlaIV	GGNNCC	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	349, 443
NspI	RCATGY	2 cut(s)	339, 409
PaqCI	CACCTGC	1 cut(s)	116
PciI	ACATGT	1 cut(s)	335
PdiI	GCCGGC	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	274
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	3 cut(s)	153, 300, 487
PscI	ACATGT	1 cut(s)	335
Psp124BI	GAGCTC	2 cut(s)	503, 538
PspN4I	GGNNCC	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	6 cut(s)	98, 131, 241, 340, 356, 362
RsaNI	GTAC	6 cut(s)	97, 130, 240, 339, 355, 361
RseI	CAYNNNNRTG	1 cut(s)	306
SacI	GAGCTC	2 cut(s)	503, 538
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	3 cut(s)	152, 299, 486
ScaI	AGTACT	1 cut(s)	131
SduI	GDGCHC	2 cut(s)	503, 538
SfaNI	GCATC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	306
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	2 cut(s)	177, 246
SsiI	CCGC	3 cut(s)	157, 299, 486
SspI	AATATT	1 cut(s)	230
SspMI	CTAG	1 cut(s)	453
SstI	GAGCTC	2 cut(s)	503, 538
TaaI	ACNGT	3 cut(s)	134, 239, 371
TaiI	ACGT	2 cut(s)	192, 356
TaqI	TCGA	1 cut(s)	401
TasI	AATT	2 cut(s)	177, 246
TatI	WGTACW	3 cut(s)	129, 239, 338
TauI	GCSGC	2 cut(s)	301, 488
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseFI	GTSAC	2 cut(s)	349, 443
TseI	GCWGC	1 cut(s)	151
Tsp45I	GTSAC	2 cut(s)	349, 443
TspDTI	ATGAA	3 cut(s)	17, 21, 240
Tth111I	GACNNNGTC	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	274
XapI	RAATTY	2 cut(s)	177, 246
XceI	RCATGY	2 cut(s)	339, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XspI	CTAG	1 cut(s)	453
ZrmI	AGTACT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.