Rmu_sc0001241.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001241.1
OG0018017
Physical Location & Seq
Reverse (-)
431 .. 1292
862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001241.1_g000001.1.cds

Sequence Viewer

Length: 639 bp
atgcctaaggatgctaattttatccatgttgacatatatgatgtgactgagcctaagcctgcaaccaggtcagtcgtggagaatgagttggagaaactggagacggatcataagtgtcctttgtgccaaaatccaatgcctcgcgatgatgcagatcagttttcctatgaacccaacgacactaatcctatggtgacggaccgtgaagtttcacgcacatctattgatgctggacaaatctacctcgaaactgagccacagtcactaataattcctagtcgttgcgagctgcagccaactatgatcactcaagttcttagaagcatgagtgttccccagcatgagcagccacccattgttgccaaaatatttgaggcggttgctagtaacaatgatgatggtggtggtgcttttattaatgcggacatctacgatgggactttgaaattgttcaatcttagggcctttgtacgatggcatttcaggattagacttactggaattgatcgtcccatctcaaacgaaatcgatgctacggttgcaagggaattagccgaggaggaattattaggaaagcctaggcctaagcctgcaactaaatcagccattgaggggttggagagagtgaaagttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.88

Weight (kDa)

4.84

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 144
AciI CCGC 2 cut(s) 377, 422
AclWI GGATC 1 cut(s) 114
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 1 cut(s) 612
AgsI TTSAA 2 cut(s) 445, 454
AjnI CCWGG 1 cut(s) 65
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 114
AoxI GGCC 2 cut(s) 462, 581
ApeKI GCWGC 3 cut(s) 289, 292, 346
AseI ATTAAT 1 cut(s) 417
Asp700I GAANNNNTTC 1 cut(s) 449
AspA2I CCTAGG 1 cut(s) 578
AspS9I GGNCC 2 cut(s) 199, 462
AsuHPI GGTGA 1 cut(s) 205
AvaII GGWCC 1 cut(s) 199
AvrII CCTAGG 1 cut(s) 578
AxyI CCTNAGG 1 cut(s) 6
BbvI GCAGC 3 cut(s) 276, 304, 358
BccI CCATC 4 cut(s) 392, 428, 468, 521
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 1 cut(s) 67
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 3 cut(s) 276, 384, 579
BfmI CTRYAG 1 cut(s) 290
BisI GCNGC 3 cut(s) 290, 293, 347
BlnI CCTAGG 1 cut(s) 578
BlsI GCNGC 3 cut(s) 291, 294, 348
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 199, 462
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 3 cut(s) 139, 217, 520
BpmI CTGGAG 1 cut(s) 119
Bpu10I CCTNAGC 2 cut(s) 54, 585
BpuEI CTTGAG 1 cut(s) 294
Bsa29I ATCGAT 1 cut(s) 528
BsaBI GATNNNNATC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 555, 578
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 612
Bse1I ACTGG 2 cut(s) 102, 502
Bse21I CCTNAGG 1 cut(s) 6
Bse8I GATNNNNATC 1 cut(s) 153
BseBI CCWGG 1 cut(s) 67
BseCI ATCGAT 1 cut(s) 528
BseDI CCNNGG 2 cut(s) 555, 578
BseGI GGATG 1 cut(s) 16
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 612
BseMII CTCAG 2 cut(s) 39, 243
BseNI ACTGG 2 cut(s) 102, 502
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 3 cut(s) 276, 304, 358
BseYI CCCAGC 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 464, 583
BshVI ATCGAT 1 cut(s) 528
BslFI GGGAC 2 cut(s) 451, 495
BslI CCNNNNNNNGG 1 cut(s) 612
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 451, 495
BsnI GGCC 2 cut(s) 464, 583
Bsp143I GATC 4 cut(s) 106, 154, 303, 505
Bsp68I TCGCGA 1 cut(s) 144
BspACI CCGC 2 cut(s) 377, 422
BspANI GGCC 2 cut(s) 464, 583
BspCNI CTCAG 2 cut(s) 40, 244
BspDI ATCGAT 1 cut(s) 528
BspFNI CGCG 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 294
BspPI GGATC 1 cut(s) 114
BsrI ACTGG 2 cut(s) 102, 502
BssECI CCNNGG 2 cut(s) 555, 578
BssMI GATC 4 cut(s) 106, 154, 303, 505
BssT1I CCWWGG 1 cut(s) 578
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 3 cut(s) 203, 261, 538
BstC8I GCNNGC 3 cut(s) 60, 287, 591
BstDEI CTNAG 7 cut(s) 6, 48, 54, 252, 317, 458, 585
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 4 cut(s) 109, 157, 306, 508
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 106, 154, 303, 505
BstMWI GCNNNNNNNGC 2 cut(s) 346, 539
BstNI CCWGG 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 65
BstSFI CTRYAG 1 cut(s) 290
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 276, 304, 358
Bsu15I ATCGAT 1 cut(s) 528
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 464, 583
BsuTUI ATCGAT 1 cut(s) 528
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 16
BtuMI TCGCGA 1 cut(s) 144
Cac8I GCNNGC 3 cut(s) 60, 287, 591
Cfr13I GGNCC 2 cut(s) 199, 462
ClaI ATCGAT 1 cut(s) 528
CpoI CGGWCCG 1 cut(s) 199
CsiI ACCWGGT 1 cut(s) 65
Csp6I GTAC 1 cut(s) 470
CspI CGGWCCG 1 cut(s) 199
CviAII CATG 3 cut(s) 26, 325, 341
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 7 cut(s) 6, 48, 54, 252, 317, 458, 585
DpnI GATC 4 cut(s) 108, 156, 305, 507
DpnII GATC 4 cut(s) 106, 154, 303, 505
Eco130I CCWWGG 1 cut(s) 578
Eco147I AGGCCT 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 578
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 3 cut(s) 29, 328, 344
FaqI GGGAC 2 cut(s) 451, 495
FatI CATG 3 cut(s) 25, 324, 340
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 290, 293, 347
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 290, 293, 347
FspBI CTAG 3 cut(s) 276, 384, 579
GluI GCNGC 3 cut(s) 290, 293, 347
GsaI CCCAGC 1 cut(s) 340
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 2 cut(s) 464, 583
Hin1II CATG 3 cut(s) 29, 328, 344
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 143, 484
Hpy8I GTNNAC 1 cut(s) 31
HpyCH4III ACNGT 3 cut(s) 203, 261, 538
HpyCH4V TGCA 5 cut(s) 62, 152, 292, 542, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 539
HpyF3I CTNAG 7 cut(s) 6, 48, 54, 252, 317, 458, 585
Hsp92II CATG 3 cut(s) 29, 328, 344
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 4 cut(s) 106, 154, 303, 505
LpnPI CCDG 9 cut(s) 52, 72, 79, 83, 216, 350, 469, 483, 603
Lsp1109I GCAGC 3 cut(s) 276, 304, 358
LweI GCATC 3 cut(s) 139, 217, 520
MabI ACCWGGT 1 cut(s) 65
MaeI CTAG 3 cut(s) 276, 384, 579
MaeIII GTNAC 4 cut(s) 43, 193, 261, 386
MalI GATC 4 cut(s) 108, 156, 305, 507
MboI GATC 4 cut(s) 106, 154, 303, 505
MluCI AATT 6 cut(s) 16, 270, 446, 501, 548, 563
MmeI TCCRAC 2 cut(s) 69, 597
MnlI CCTC 6 cut(s) 150, 254, 367, 550, 553, 604
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 1 cut(s) 417
MspR9I CCNGG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 67
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 346, 539
NdeII GATC 4 cut(s) 106, 154, 303, 505
NlaIII CATG 3 cut(s) 29, 328, 344
NmeAIII GCCGAG 1 cut(s) 580
NmuCI GTSAC 3 cut(s) 43, 193, 261
NruI TCGCGA 1 cut(s) 144
PceI AGGCCT 1 cut(s) 583
PdmI GAANNNNTTC 1 cut(s) 449
PkrI GCNGC 3 cut(s) 291, 294, 348
PshBI ATTAAT 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 336
PspGI CCWGG 1 cut(s) 65
PspPI GGNCC 2 cut(s) 199, 462
PstI CTGCAG 1 cut(s) 294
RruI TCGCGA 1 cut(s) 144
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
Rsr2I CGGWCCG 1 cut(s) 199
RsrII CGGWCCG 1 cut(s) 199
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 3 cut(s) 290, 293, 347
Sau3AI GATC 4 cut(s) 106, 154, 303, 505
Sau96I GGNCC 2 cut(s) 199, 462
ScrFI CCNGG 1 cut(s) 67
SetI ASST 3 cut(s) 71, 246, 291
SexAI ACCWGGT 1 cut(s) 65
SfaNI GCATC 3 cut(s) 139, 217, 520
SfcI CTRYAG 1 cut(s) 290
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 6 cut(s) 16, 270, 446, 501, 548, 563
SseBI AGGCCT 1 cut(s) 583
SsiI CCGC 2 cut(s) 377, 422
SspI AATATT 1 cut(s) 369
SspMI CTAG 3 cut(s) 276, 384, 579
StuI AGGCCT 1 cut(s) 583
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 578
TaaI ACNGT 3 cut(s) 203, 261, 538
TaqI TCGA 2 cut(s) 246, 528
TasI AATT 6 cut(s) 16, 270, 446, 501, 548, 563
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 3 cut(s) 43, 193, 261
TseI GCWGC 3 cut(s) 289, 292, 346
Tsp45I GTSAC 3 cut(s) 43, 193, 261
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 2 cut(s) 119, 212
VpaK11BI GGWCC 1 cut(s) 199
VspI ATTAAT 1 cut(s) 417
XcmI CCANNNNNNNNNTGG 2 cut(s) 73, 613
XmaJI CCTAGG 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 3 cut(s) 276, 384, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.