Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05600 AT1G05600 AT1G05600 |
| fragaria_vesca | FvH4_4g01580 FvH4_7g16930 |
| malus_domestica | MD12G1085500.v1.1 |
| prunus_persica | Prupe.2G028400_v2.0.a1 Prupe.2G028400_v2.0.a1 |
| pyrus_communis | pycom12g07260 |
| rosa_chinensis | RchiOBHm_Chr1g0360171 |
| rosa_laevigata | RLG00000027824 |
| rosa_multiflora | Rmu_co8362791.1_g000001 Rmu_sc0007813.1_g000003 Rmu_ssc0000368.1_g000046 |
| rosa_roxburghii | Rroxscaffold_4G00296340 |
| rosa_rugosa | Rorug01G0275600 |
| rosa_samantha | Rh1AG289300 Rh1BG255000 Rh1CG272300 Rh1DG284400 |
| rosa_wichuraiana | Rw1G025670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 136 |
| AfaI | GTAC | 2 cut(s) | 12, 126 |
| AgsI | TTSAA | 1 cut(s) | 236 |
| AoxI | GGCC | 2 cut(s) | 155, 298 |
| ApeKI | GCWGC | 2 cut(s) | 185, 188 |
| AspS9I | GGNCC | 1 cut(s) | 23 |
| AsuHPI | GGTGA | 1 cut(s) | 241 |
| AvaII | GGWCC | 1 cut(s) | 23 |
| BbvI | GCAGC | 2 cut(s) | 172, 175 |
| BccI | CCATC | 1 cut(s) | 238 |
| BclI | TGATCA | 1 cut(s) | 34 |
| BfaI | CTAG | 1 cut(s) | 63 |
| BisI | GCNGC | 2 cut(s) | 186, 189 |
| BlsI | GCNGC | 2 cut(s) | 187, 190 |
| BmcAI | AGTACT | 1 cut(s) | 126 |
| Bme18I | GGWCC | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 1 cut(s) | 23 |
| BmrI | ACTGGG | 1 cut(s) | 48 |
| BmuI | ACTGGG | 1 cut(s) | 48 |
| Bse1I | ACTGG | 2 cut(s) | 26, 54 |
| Bse3DI | GCAATG | 1 cut(s) | 81 |
| BseMI | GCAATG | 1 cut(s) | 81 |
| BseNI | ACTGG | 2 cut(s) | 26, 54 |
| BseRI | GAGGAG | 1 cut(s) | 57 |
| BseXI | GCAGC | 2 cut(s) | 172, 175 |
| BshFI | GGCC | 2 cut(s) | 157, 300 |
| BsnI | GGCC | 2 cut(s) | 157, 300 |
| Bsp143I | GATC | 1 cut(s) | 34 |
| BspANI | GGCC | 2 cut(s) | 157, 300 |
| BspHI | TCATGA | 1 cut(s) | 307 |
| BsrDI | GCAATG | 1 cut(s) | 81 |
| BsrI | ACTGG | 2 cut(s) | 26, 54 |
| BssMI | GATC | 1 cut(s) | 34 |
| Bst4CI | ACNGT | 2 cut(s) | 23, 260 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 185 |
| BstKTI | GATC | 1 cut(s) | 37 |
| BstMBI | GATC | 1 cut(s) | 34 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 185 |
| BstV1I | GCAGC | 2 cut(s) | 172, 175 |
| BsuRI | GGCC | 2 cut(s) | 157, 300 |
| BtsI | GCAGTG | 1 cut(s) | 228 |
| BtsIMutI | CAGTG | 1 cut(s) | 228 |
| CciI | TCATGA | 1 cut(s) | 307 |
| Cfr13I | GGNCC | 1 cut(s) | 23 |
| CseI | GACGC | 1 cut(s) | 128 |
| Csp6I | GTAC | 2 cut(s) | 11, 125 |
| CviAII | CATG | 2 cut(s) | 38, 308 |
| CviJI | RGCY | 6 cut(s) | 62, 116, 150, 157, 185, 300 |
| CviKI_1 | RGCY | 6 cut(s) | 62, 116, 150, 157, 185, 300 |
| CviQI | GTAC | 2 cut(s) | 11, 125 |
| DpnI | GATC | 1 cut(s) | 36 |
| DpnII | GATC | 1 cut(s) | 34 |
| Eco147I | AGGCCT | 1 cut(s) | 300 |
| Eco47I | GGWCC | 1 cut(s) | 23 |
| Eco57I | CTGAAG | 1 cut(s) | 136 |
| FaeI | CATG | 2 cut(s) | 41, 311 |
| FaiI | YATR | 7 cut(s) | 33, 39, 174, 196, 272, 287, 309 |
| FatI | CATG | 2 cut(s) | 37, 307 |
| FbaI | TGATCA | 1 cut(s) | 34 |
| Fnu4HI | GCNGC | 2 cut(s) | 186, 189 |
| Fsp4HI | GCNGC | 2 cut(s) | 186, 189 |
| FspBI | CTAG | 1 cut(s) | 63 |
| GluI | GCNGC | 2 cut(s) | 186, 189 |
| HaeIII | GGCC | 2 cut(s) | 157, 300 |
| HgaI | GACGC | 1 cut(s) | 128 |
| Hin1II | CATG | 2 cut(s) | 41, 311 |
| HphI | GGTGA | 1 cut(s) | 241 |
| Hpy188III | TCNNGA | 1 cut(s) | 308 |
| HpyCH4III | ACNGT | 2 cut(s) | 23, 260 |
| HpyCH4V | TGCA | 3 cut(s) | 74, 139, 191 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 185 |
| Hsp92II | CATG | 2 cut(s) | 41, 311 |
| Ksp22I | TGATCA | 1 cut(s) | 34 |
| Kzo9I | GATC | 1 cut(s) | 34 |
| LmnI | GCTCC | 1 cut(s) | 176 |
| LpnPI | CCDG | 5 cut(s) | 39, 67, 125, 130, 139 |
| Lsp1109I | GCAGC | 2 cut(s) | 172, 175 |
| MaeI | CTAG | 1 cut(s) | 63 |
| MalI | GATC | 1 cut(s) | 36 |
| MboI | GATC | 1 cut(s) | 34 |
| MmeI | TCCRAC | 2 cut(s) | 42, 290 |
| MnlI | CCTC | 5 cut(s) | 35, 38, 106, 220, 290 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 185 |
| NdeII | GATC | 1 cut(s) | 34 |
| NlaIII | CATG | 2 cut(s) | 41, 311 |
| PagI | TCATGA | 1 cut(s) | 307 |
| PceI | AGGCCT | 1 cut(s) | 300 |
| PkrI | GCNGC | 2 cut(s) | 187, 190 |
| PspPI | GGNCC | 1 cut(s) | 23 |
| RsaI | GTAC | 2 cut(s) | 12, 126 |
| RsaNI | GTAC | 2 cut(s) | 11, 125 |
| SatI | GCNGC | 2 cut(s) | 186, 189 |
| Sau3AI | GATC | 1 cut(s) | 34 |
| Sau96I | GGNCC | 1 cut(s) | 23 |
| ScaI | AGTACT | 1 cut(s) | 126 |
| SetI | ASST | 1 cut(s) | 231 |
| SgeI | CNNG | 7 cut(s) | 38, 50, 66, 75, 152, 157, 166 |
| SinI | GGWCC | 1 cut(s) | 23 |
| SseBI | AGGCCT | 1 cut(s) | 300 |
| SspMI | CTAG | 1 cut(s) | 63 |
| StuI | AGGCCT | 1 cut(s) | 300 |
| TaaI | ACNGT | 2 cut(s) | 23, 260 |
| TaqI | TCGA | 1 cut(s) | 96 |
| TatI | WGTACW | 2 cut(s) | 10, 124 |
| TscAI | CASTG | 1 cut(s) | 228 |
| TseI | GCWGC | 2 cut(s) | 185, 188 |
| TspDTI | ATGAA | 1 cut(s) | 147 |
| TspRI | CASTG | 1 cut(s) | 228 |
| VpaK11BI | GGWCC | 1 cut(s) | 23 |
| XspI | CTAG | 1 cut(s) | 63 |
| ZrmI | AGTACT | 1 cut(s) | 126 |