Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010477

Physical Location & Seq

Genomic Coordinates Forward (+)

7515307 .. 7516818

Gene Structure 1512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGAGTATAAGATGGCCGAGGCTGCTAACACCCACACATCTCTCTCAGATTATACGAAAGCAGAAAAACCCATTGACGGCCCTCCAAATTTTCACTCAAGTGAAATCCAAATACCCCAATTACCGTCACAATGGTCCAGTCTACGCCACCATGATCAGCATTCTCGGAAACTCTGGCCGAATTGCTGAGATGAAGGACGTGATTAAGAAGATGAAAAATCATTCCTGTGAATGCAAAGATTCAGTTTTTGCAACTGCAATTAAAACCTACGCGCAAGCTGGATTGCTGGAGGATGCAGTGTCTCTGTTTAATAACATTTCCAAGTTCAACTGTGTGAACTGGACGCATTCTTTCAATACCCTTTTGGAGATTATGGTGAATGAGTCCAAGCTTGAAGCTGCTCATCGCATTTTTGTGGAGCATTGTTGTGGGTGGGAGGTGAGCTCTCGGGTTCGGTCCTTGAATTTGCTCATGCTTGCTTTGTGCCGGAAGGGTCGTTCAGATATTGCCCTGCAAATTTTCCAAGAAATGGATTATCAGCATTGTAATCCGGATAGGGAAAGTTATCGGATTTTGATGAGAGGGTTGTGTGAAGATAAGAGGCTCAATGAGGCAACCCATTTGTTGTACTCTATGTTTTGGAGGATTTCTCAGAAGGGTTGTGGTGAAGATGTTGTAATTTATAGAACCTTGTTGGATGCCTTGTGTGATAATGGGGAGATTGACAAAGCTGTCGAAATTCTTGGTAAGATATTAAGGAAGGGGCTCAAGGCCCCTAAGCGGTTTCAATACAATCTTGATCTCAGTTGTTATGGAAATGGCAAAGACACGGGAGGCGTGAAGCTGTTGATTAATGAAGCTCTGGTTAGAGGTGGGATTCCCAGCTTGGCAAGCTATAGTGCTATGGCAATTGATCTTTACAATGAAAATAAGATTGGTGAGGCTGACAAAGTGCTCAAGGAAATGCGAGATAACGGCTTTAGGCCAACAGAGTGGGTCTTTGAAGCAAAGGTGGCTGCATTGAGTAGTGAAAAGAAAGTCGTTGAAGCAGTGGAGGTGATTGAAAAGGAGATGGTGGAGGCAAACTGTGTACCAACTCTAAGAGTGTACAATGTTGTGATTAGATGCCTGTGTAGTGAAGGGCAATCGGTTCTTGCCATTACGTATTTGAAGAAGATGGAAAAGCAGGTGGGTTGTGTTGCTGACAAGAAAACTTATGGCATTTTAGTGGATGGGCTTTGTGAGGAGAGACGATTTCTGGAAGCAAGTCAAGTATTGCAAGAGATGTTGATCAAGTCACATTGGTCCTGTGCTGAGACTTACAGTCGAGTGATTAGGGGTCTTTGCTCAGTGGGCAGACAATATGAAGCTGTTATGTGGTTGGAGGAGATGTTAAGTCGGGCTATGCTACCGGAGCATTTGCTATGGAACTCATTGGTGGCATCTGTGTGTTCTAACATAGCCAATGTTGAGGTTTGCTATGAGACCTATAACCGACTACGAAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

504

Amino Acids

57.24

Weight (kDa)

8.55

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	153 - 197	2.3e-10	PPR repeat family
PPR_1	PF12854	219 - 249	1.7e-06	PPR repeat
PPR_2	PF13041	368 - 414	1.2e-08	PPR repeat family
PPR_1	PF12854	398 - 429	2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05600 AT1G05600 AT1G05600
fragaria_vesca	FvH4_4g01580 FvH4_7g16930
malus_domestica	MD12G1085500.v1.1
prunus_persica	Prupe.2G028400_v2.0.a1 Prupe.2G028400_v2.0.a1
pyrus_communis	pycom12g07260
rosa_chinensis	RchiOBHm_Chr1g0360171
rosa_laevigata	RLG00000027824
rosa_multiflora	Rmu_co8362791.1_g000001 Rmu_sc0007813.1_g000003 Rmu_ssc0000368.1_g000046
rosa_roxburghii	Rroxscaffold_4G00296340
rosa_rugosa	Rorug01G0275600
rosa_samantha	Rh1AG289300 Rh1BG255000 Rh1CG272300 Rh1DG284400
rosa_wichuraiana	Rw1G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1177
AasI	GACNNNNNNGTC	1 cut(s)	731
Acc36I	ACCTGC	1 cut(s)	1177
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	272
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	1 cut(s)	781
AcoI	YGGCCR	2 cut(s)	14, 175
AcsI	RAATTY	5 cut(s)	87, 463, 516, 738, 1504
AfaI	GTAC	3 cut(s)	629, 1092, 1109
AfiI	CCNNNNNNNGG	3 cut(s)	76, 529, 780
AgsI	TTSAA	9 cut(s)	328, 355, 395, 463, 788, 1004, 1046, 1064, 1171
AhdI	GACNNNNNGTC	1 cut(s)	1323
AjiI	CACGTC	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	918, 950
AleI	CACNNNNGTG	1 cut(s)	98
AloI	GAACNNNNNNTCC	2 cut(s)	481, 513
Alw21I	GWGCWC	2 cut(s)	446, 957
Alw26I	GTCTC	4 cut(s)	306, 1243, 1310, 1478
Ama87I	CYCGRG	1 cut(s)	447
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	5 cut(s)	14, 78, 175, 771, 983
ApeKI	GCWGC	3 cut(s)	22, 398, 1016
ApoI	RAATTY	5 cut(s)	87, 463, 516, 738, 1504
AseI	ATTAAT	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	5 cut(s)	79, 134, 456, 772, 1305
AsuHPI	GGTGA	5 cut(s)	388, 451, 677, 950, 1069
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	3 cut(s)	134, 456, 1305
BanII	GRGCYC	2 cut(s)	446, 768
Bbv12I	GWGCWC	2 cut(s)	446, 957
BbvI	GCAGC	3 cut(s)	9, 385, 1003
BccI	CCATC	4 cut(s)	6, 1066, 1171, 1226
BceAI	ACGGC	2 cut(s)	93, 991
BclI	TGATCA	2 cut(s)	153, 1290
BcoDI	GTCTC	4 cut(s)	306, 1243, 1310, 1478
BfmI	CTRYAG	1 cut(s)	895
BfuAI	ACCTGC	1 cut(s)	1177
BisI	GCNGC	3 cut(s)	23, 399, 1017
BlsI	GCNGC	3 cut(s)	24, 400, 1018
Bme18I	GGWCC	3 cut(s)	134, 456, 1305
BmeRI	GACNNNNNGTC	1 cut(s)	1323
BmeT110I	CYCGRG	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	5 cut(s)	79, 134, 456, 772, 1305
BmiI	GGNNCC	1 cut(s)	774
BmsI	GCATC	4 cut(s)	283, 688, 1115, 1451
BplI	GAGNNNNNCTC	4 cut(s)	428, 460, 634, 666
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	3 cut(s)	81, 752, 941
BsaAI	YACGTR	1 cut(s)	1164
BsaBI	GATNNNNATC	1 cut(s)	1289
BsaI	GGTCTC	1 cut(s)	1478
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	2 cut(s)	550, 1411
BsaXI	ACNNNNNCTCC	2 cut(s)	1376, 1406
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 529, 780
Bse1I	ACTGG	2 cut(s)	137, 344
Bse8I	GATNNNNATC	1 cut(s)	1289
BseAI	TCCGGA	1 cut(s)	550
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	3 cut(s)	298, 703, 1237
BseJI	GATNNNNATC	1 cut(s)	1289
BseLI	CCNNNNNNNGG	3 cut(s)	76, 529, 780
BseMII	CTCAG	6 cut(s)	59, 177, 665, 817, 1305, 1362
BseNI	ACTGG	2 cut(s)	137, 344
BseRI	GAGGAG	2 cut(s)	1259, 1400
BseXI	GCAGC	3 cut(s)	9, 385, 1003
BseYI	CCCAGC	1 cut(s)	881
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	5 cut(s)	16, 80, 177, 773, 985
BsiHKAI	GWGCWC	2 cut(s)	446, 957
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	3 cut(s)	487, 551, 1412
BslI	CCNNNNNNNGG	3 cut(s)	76, 529, 780
BsmAI	GTCTC	4 cut(s)	306, 1243, 1310, 1478
BsmBI	CGTCTC	1 cut(s)	1243
BsmI	GAATGC	3 cut(s)	159, 236, 346
BsnI	GGCC	5 cut(s)	16, 80, 177, 773, 985
Bso31I	GGTCTC	1 cut(s)	1478
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	3 cut(s)	446, 768, 957
Bsp13I	TCCGGA	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	1107
Bsp143I	GATC	4 cut(s)	153, 799, 913, 1290
BspACI	CCGC	1 cut(s)	781
BspANI	GGCC	5 cut(s)	16, 80, 177, 773, 985
BspCNI	CTCAG	6 cut(s)	58, 178, 664, 816, 1306, 1361
BspEI	TCCGGA	1 cut(s)	550
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	774
BspMI	ACCTGC	1 cut(s)	1177
BspTNI	GGTCTC	1 cut(s)	1478
BsrGI	TGTACA	1 cut(s)	1107
BsrI	ACTGG	2 cut(s)	137, 344
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	4 cut(s)	153, 799, 913, 1290
Bst4CI	ACNGT	4 cut(s)	125, 332, 1088, 1325
BstAUI	TGTACA	1 cut(s)	1107
BstBAI	YACGTR	1 cut(s)	1164
BstC8I	GCNNGC	3 cut(s)	276, 477, 892
BstDEI	CTNAG	8 cut(s)	45, 186, 651, 777, 803, 1100, 1314, 1348
BstF5I	GGATG	3 cut(s)	298, 703, 1237
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	4 cut(s)	156, 802, 916, 1293
BstMAI	GTCTC	4 cut(s)	306, 1243, 1310, 1478
BstMBI	GATC	4 cut(s)	153, 799, 913, 1290
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 891, 1013, 1353, 1414
BstSFI	CTRYAG	1 cut(s)	895
BstSNI	TACGTA	1 cut(s)	1164
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	3 cut(s)	9, 385, 1003
BstXI	CCANNNNNNTGG	1 cut(s)	993
BsuRI	GGCC	5 cut(s)	16, 80, 177, 773, 985
BtgZI	GCGATG	1 cut(s)	389
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	298, 703, 1237
BtsI	GCAGTG	2 cut(s)	303, 1056
BtsIMutI	CAGTG	3 cut(s)	303, 1056, 1356
BveI	ACCTGC	1 cut(s)	1177
Cac8I	GCNNGC	3 cut(s)	276, 477, 892
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	5 cut(s)	79, 134, 456, 772, 1305
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	3 cut(s)	628, 1091, 1108
CviAII	CATG	2 cut(s)	151, 472
CviQI	GTAC	3 cut(s)	628, 1091, 1108
DdeI	CTNAG	8 cut(s)	45, 186, 651, 777, 803, 1100, 1314, 1348
DpnI	GATC	4 cut(s)	155, 801, 915, 1292
DpnII	GATC	4 cut(s)	153, 799, 913, 1290
DrdI	GACNNNNNNGTC	1 cut(s)	731
DriI	GACNNNNNGTC	1 cut(s)	1323
DseDI	GACNNNNNNGTC	1 cut(s)	731
EaeI	YGGCCR	2 cut(s)	14, 175
Eam1105I	GACNNNNNGTC	1 cut(s)	1323
Ecl136II	GAGCTC	1 cut(s)	444
Eco105I	TACGTA	1 cut(s)	1164
Eco24I	GRGCYC	2 cut(s)	446, 768
Eco31I	GGTCTC	1 cut(s)	1478
Eco47I	GGWCC	3 cut(s)	134, 456, 1305
Eco53kI	GAGCTC	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	447
EcoICRI	GAGCTC	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	772
EcoT38I	GRGCYC	2 cut(s)	446, 768
Esp3I	CGTCTC	1 cut(s)	1243
FaeI	CATG	2 cut(s)	154, 475
FatI	CATG	2 cut(s)	150, 471
FbaI	TGATCA	2 cut(s)	153, 1290
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	23, 399, 1017
FokI	GGATG	3 cut(s)	305, 710, 1244
FriOI	GRGCYC	2 cut(s)	446, 768
Fsp4HI	GCNGC	3 cut(s)	23, 399, 1017
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	3 cut(s)	23, 399, 1017
GsaI	CCCAGC	1 cut(s)	885
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	5 cut(s)	16, 80, 177, 773, 985
HapII	CCGG	3 cut(s)	487, 551, 1412
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	154, 475
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	3 cut(s)	239, 383, 877
HpaII	CCGG	3 cut(s)	487, 551, 1412
HphI	GGTGA	5 cut(s)	388, 451, 677, 950, 1069
Hpy166II	GTNNAC	4 cut(s)	142, 337, 1091, 1108
Hpy188I	TCNGA	5 cut(s)	48, 167, 502, 570, 654
Hpy188III	TCNNGA	3 cut(s)	551, 797, 1259
Hpy8I	GTNNAC	4 cut(s)	142, 337, 1091, 1108
HpyAV	CCTTC	5 cut(s)	187, 484, 649, 754, 1133
HpyCH4III	ACNGT	4 cut(s)	125, 332, 1088, 1325
HpyCH4IV	ACGT	2 cut(s)	198, 1163
HpyCH4V	TGCA	7 cut(s)	234, 251, 257, 296, 514, 1019, 1279
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 891, 1013, 1353, 1414
HpyF3I	CTNAG	8 cut(s)	45, 186, 651, 777, 803, 1100, 1314, 1348
HpySE526I	ACGT	2 cut(s)	198, 1163
Hsp92II	CATG	2 cut(s)	154, 475
HspAI	GCGC	1 cut(s)	272
Kpn2I	TCCGGA	1 cut(s)	550
Ksp22I	TGATCA	2 cut(s)	153, 1290
Kzo9I	GATC	4 cut(s)	153, 799, 913, 1290
LmnI	GCTCC	2 cut(s)	418, 1414
Lsp1109I	GCAGC	3 cut(s)	9, 385, 1003
LweI	GCATC	4 cut(s)	283, 688, 1115, 1451
MaeII	ACGT	2 cut(s)	198, 1163
MaeIII	GTNAC	2 cut(s)	125, 1296
MalI	GATC	4 cut(s)	155, 801, 915, 1292
MboI	GATC	4 cut(s)	153, 799, 913, 1290
MboII	GAAGA	5 cut(s)	220, 605, 680, 1183, 1186
MfeI	CAATTG	1 cut(s)	909
MhlI	GDGCHC	3 cut(s)	446, 768, 957
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	2 cut(s)	675, 1362
MroI	TCCGGA	1 cut(s)	550
MseI	TTAA	7 cut(s)	204, 261, 309, 755, 852, 1394, 1510
MslI	CAYNNNNRTG	6 cut(s)	98, 225, 413, 426, 1226, 1447
MspI	CCGG	3 cut(s)	487, 551, 1412
MunI	CAATTG	1 cut(s)	909
Mva1269I	GAATGC	3 cut(s)	159, 236, 346
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	5 cut(s)	22, 891, 1013, 1353, 1414
NdeII	GATC	4 cut(s)	153, 799, 913, 1290
NlaIII	CATG	2 cut(s)	154, 475
NlaIV	GGNNCC	1 cut(s)	774
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	2 cut(s)	125, 1296
OliI	CACNNNNGTG	1 cut(s)	98
PaqCI	CACCTGC	1 cut(s)	1177
PctI	GAATGC	3 cut(s)	159, 236, 346
PfeI	GAWTC	2 cut(s)	239, 877
PflMI	CCANNNNNTGG	1 cut(s)	529
PkrI	GCNGC	3 cut(s)	24, 400, 1018
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
Ppu21I	YACGTR	1 cut(s)	1164
PshBI	ATTAAT	1 cut(s)	852
Psp124BI	GAGCTC	1 cut(s)	446
PspFI	CCCAGC	1 cut(s)	881
PspN4I	GGNNCC	1 cut(s)	774
PspPI	GGNCC	5 cut(s)	79, 134, 456, 772, 1305
RsaI	GTAC	3 cut(s)	629, 1092, 1109
RsaNI	GTAC	3 cut(s)	628, 1091, 1108
RseI	CAYNNNNRTG	6 cut(s)	98, 225, 413, 426, 1226, 1447
SacI	GAGCTC	1 cut(s)	446
SaqAI	TTAA	7 cut(s)	204, 261, 309, 755, 852, 1394, 1510
SatI	GCNGC	3 cut(s)	23, 399, 1017
Sau3AI	GATC	4 cut(s)	153, 799, 913, 1290
Sau96I	GGNCC	5 cut(s)	79, 134, 456, 772, 1305
SchI	GAGTC	1 cut(s)	392
SduI	GDGCHC	3 cut(s)	446, 768, 957
SfaNI	GCATC	4 cut(s)	283, 688, 1115, 1451
SfcI	CTRYAG	1 cut(s)	895
SinI	GGWCC	3 cut(s)	134, 456, 1305
SmiMI	CAYNNNNRTG	6 cut(s)	98, 225, 413, 426, 1226, 1447
SmlI	CTYRAG	3 cut(s)	96, 767, 956
SmoI	CTYRAG	3 cut(s)	96, 767, 956
SnaBI	TACGTA	1 cut(s)	1164
SsiI	CCGC	1 cut(s)	781
SstI	GAGCTC	1 cut(s)	446
TaaI	ACNGT	4 cut(s)	125, 332, 1088, 1325
TaiI	ACGT	2 cut(s)	201, 1166
TaqI	TCGA	2 cut(s)	735, 1327
TaqII	GACCGA	1 cut(s)	444
TatI	WGTACW	2 cut(s)	627, 1107
TfiI	GAWTC	2 cut(s)	239, 877
Tru1I	TTAA	7 cut(s)	204, 261, 309, 755, 852, 1394, 1510
Tru9I	TTAA	7 cut(s)	204, 261, 309, 755, 852, 1394, 1510
TscAI	CASTG	3 cut(s)	303, 1056, 1356
TseFI	GTSAC	2 cut(s)	125, 1296
TseI	GCWGC	3 cut(s)	22, 398, 1016
Tsp45I	GTSAC	2 cut(s)	125, 1296
TspDTI	ATGAA	5 cut(s)	206, 227, 870, 939, 1380
TspRI	CASTG	3 cut(s)	303, 1056, 1356
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	3 cut(s)	134, 456, 1305
VspI	ATTAAT	1 cut(s)	852
XapI	RAATTY	5 cut(s)	87, 463, 516, 738, 1504
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.