FvH4_7g16930

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
14519694 .. 14521157
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16930.t1

Sequence Viewer

Length: 1464 bp
ATGCAGAAAAACCCATTAACAGCTCTGAAGATTTTCAGTGAAGCACAATCCAAGTACCCCAATTACCGCCACAATGGTCCGGTTTATGCCACCGTGATTGGCATTCTCGGAAGCTCAGGCCGAATCACTGAGATGAAGGAAGTGATCAATCAGATGAAGAGTGATTCATGTGAATGCAAAGACTCGGTGTTTGTGACTGCAATCAAGACCTACGCGAGAGCAGGGCAGCTGGACGAGGCGGTGTCTCTGTTTAAGAACCTTTCGCAGTTCAACTGTGTGAACTGGACGCAGTCTTTTAATACCCTGGTGGAGATTATGGTCGAAGAGTCCAGGCTTGAAGACGCTTGTCGCCTTTTCGTGGAGCATTGCTGTGGGTGGGAAGTGAGCTCAAGGGTTCGGAGTTTGAATTTGCTTATGCTTGCTTTGTGCCAGAAGGGCCGTTCGGACATTGCATTGCATGTTTTCCAGGAGATGGATTATCAGAGCTGCAATCCGGATAGGGAAAGTTACCGGATACTAATGAGAGGGTTGTGTGAAGACAGGAGGCTGAATGAGGCAACCCACTTGTTGTATTCGATGTTTTGGAGGATTTCTCAGAAGGGTTGTGCTGAGGATATTGTAATATATAGAACATTGTTAGATGCCTTGTGTGATAATGGGAAAGTTGAAGAGGCTGTGGAAATGCTTGGTAAGATTTTAAGGAAGGGGCTGAAGGCGCCTAAGAAGTTTCGCCTCCAACTTGATCTTAGTCGGTATAATTATGGGGAAGACACAGAAGGCATCAAGCGTTTGATCAATGCGGCTCTGGTCAGAGGAGGAAATCCCAGTTTGGCTAGTTATAGTGCTATGGCAATCGATCTTTACAACGAAAATAAGATCAATGAGGCTGACGCAGTACTAAATGAAATGCAGGATAGGGGCTTCAGGCCAACATCTATTGTTTATGGAGCAAAGGCGGCTGCATTATGTAGGGAAAGGAAAGTTGTTGAAGCAGTGGAGATGATTGAAAAGGAGATGGTGTGGGCGAACTGTGTTCCAACTGTGAAAGTGTTCAGTATAGTGGTGAAAGGCCTTTGTCATGAAAAGCAGTCAGTTCTGGCTTTCGAGTTTTTGAAGAAGATGGAAAAGCAGGTGGGTTGTGTGGCTGACAAGGAAACTTATGGCGTTTTAGTTGATGGGCTTTGTTGTGAGAGTAGATTTCTCGAAGCAAGTCAAGTATTGCAGGAAATGCTTATCAAGTCAAGATTGCCTTGTGCTGATACCTACAGTAAGGTTATTAGGGGACTCTGTTCAGTAGGAAGGCAATACGATGCTGTTATGTGGTTGGAGGAGATGACAAGTCAGGCGATACTACCAGAATATACTGTATGGAACTCATTGGTGGCATCTGTGTGTTGTAACATTGCTAATAATGAGGCATGCTCTGAGGTCTACAACCGGCTAAAGAGTTCTCCCTCAGTGTGA

Protein Analysis

488

Amino Acids

54.99

Weight (kDa)

6.58

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 134 - 178 3.1e-10 PPR repeat family
PPR_1 PF12854 200 - 230 3e-07 PPR repeat
PPR PF01535 207 - 237 9.5e-06 PPR repeat
PPR_2 PF13041 346 - 395 1.6e-07 PPR repeat family
PPR_1 PF12854 379 - 410 7.3e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1120
Acc36I ACCTGC 1 cut(s) 1120
AccB1I GGYRCC 1 cut(s) 715
AccB7I CCANNNNNTGG 1 cut(s) 472
AccI GTMKAC 1 cut(s) 1431
AccII CGCG 1 cut(s) 215
AccIII TCCGGA 1 cut(s) 493
AciI CCGC 4 cut(s) 67, 239, 800, 956
AcsI RAATTY 1 cut(s) 406
AcuI CTGAAG 3 cut(s) 47, 731, 907
AcyI GRCGYC 1 cut(s) 716
AfaI GTAC 2 cut(s) 56, 897
AfiI CCNNNNNNNGG 2 cut(s) 358, 472
AgsI TTSAA 7 cut(s) 271, 338, 406, 668, 989, 1007, 1114
AjnI CCWGG 3 cut(s) 303, 329, 465
AluBI AGCT 5 cut(s) 23, 114, 229, 387, 486
AluI AGCT 5 cut(s) 23, 114, 229, 387, 486
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 249
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 4 cut(s) 118, 436, 926, 1069
ApeKI GCWGC 3 cut(s) 226, 486, 959
ApoI RAATTY 1 cut(s) 406
ArsI GACNNNNNNTTYG 2 cut(s) 173, 205
Asp700I GAANNNNTTC 2 cut(s) 32, 1049
AspLEI GCGC 1 cut(s) 718
AspS9I GGNCC 2 cut(s) 77, 436
AsuHPI GGTGA 1 cut(s) 1075
AvaII GGWCC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 715
BanII GRGCYC 1 cut(s) 389
BbsI GAAGAC 3 cut(s) 345, 543, 774
Bbv12I GWGCWC 1 cut(s) 389
BbvCI CCTCAGC 1 cut(s) 609
BbvI GCAGC 3 cut(s) 238, 473, 946
BccI CCATC 4 cut(s) 466, 1009, 1114, 1169
BceAI ACGGC 1 cut(s) 423
BciT130I CCWGG 3 cut(s) 305, 331, 467
BciVI GTATCC 1 cut(s) 507
BclI TGATCA 2 cut(s) 144, 792
BcoDI GTCTC 1 cut(s) 249
BfaI CTAG 1 cut(s) 834
BfmI CTRYAG 1 cut(s) 1264
BfoI RGCGCY 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 1120
BfuI GTATCC 1 cut(s) 507
BglI GCCNNNNNGGC 1 cut(s) 435
BisI GCNGC 5 cut(s) 227, 487, 801, 957, 960
BlsI GCNGC 5 cut(s) 228, 488, 802, 958, 961
BmcAI AGTACT 1 cut(s) 897
Bme1390I CCNGG 3 cut(s) 305, 331, 467
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 77, 436
BmiI GGNNCC 1 cut(s) 717
BmrFI CCNGG 3 cut(s) 305, 331, 467
BmrI ACTGGG 1 cut(s) 819
BmsI GCATC 4 cut(s) 631, 789, 1300, 1394
BmuI ACTGGG 1 cut(s) 819
BoxI GACNNNNGTC 1 cut(s) 345
BpiI GAAGAC 3 cut(s) 345, 543, 774
BplI GAGNNNNNCTC 4 cut(s) 577, 609, 1406, 1438
Bpu10I CCTNAGC 2 cut(s) 115, 609
BpuEI CTTGAG 1 cut(s) 373
Bsa29I ATCGAT 1 cut(s) 855
BsaHI GRCGYC 1 cut(s) 716
BsaJI CCNNGG 1 cut(s) 303
BsaWI WCCGGW 3 cut(s) 79, 493, 510
BsaXI ACNNNNNCTCC 2 cut(s) 1004, 1034
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 472
Bse118I RCCGGY 1 cut(s) 1437
Bse1I ACTGG 2 cut(s) 287, 825
Bse3DI GCAATG 4 cut(s) 364, 447, 452, 1401
BseAI TCCGGA 1 cut(s) 493
BseBI CCWGG 3 cut(s) 305, 331, 467
BseCI ATCGAT 1 cut(s) 855
BseDI CCNNGG 1 cut(s) 303
BseLI CCNNNNNNNGG 2 cut(s) 358, 472
BseMI GCAATG 4 cut(s) 364, 447, 452, 1401
BseMII CTCAG 5 cut(s) 120, 129, 600, 608, 1416
BseNI ACTGG 2 cut(s) 287, 825
BseRI GAGGAG 2 cut(s) 828, 1343
BseXI GCAGC 3 cut(s) 238, 473, 946
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 4 cut(s) 120, 438, 928, 1071
BshNI GGYRCC 1 cut(s) 715
BshVI ATCGAT 1 cut(s) 855
BsiHKAI GWGCWC 1 cut(s) 389
BsiSI CCGG 4 cut(s) 80, 494, 511, 1438
BslFI GGGAC 1 cut(s) 1296
BslI CCNNNNNNNGG 2 cut(s) 358, 472
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 1296
BsmI GAATGC 2 cut(s) 102, 179
BsnI GGCC 4 cut(s) 120, 438, 928, 1071
Bsp1286I GDGCHC 1 cut(s) 389
Bsp13I TCCGGA 1 cut(s) 493
Bsp143I GATC 5 cut(s) 144, 742, 792, 856, 876
BspACI CCGC 4 cut(s) 67, 239, 800, 956
BspANI GGCC 4 cut(s) 120, 438, 928, 1071
BspCNI CTCAG 5 cut(s) 121, 128, 601, 607, 1417
BspDI ATCGAT 1 cut(s) 855
BspEI TCCGGA 1 cut(s) 493
BspFNI CGCG 1 cut(s) 215
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 1 cut(s) 717
BspMI ACCTGC 1 cut(s) 1120
BspT107I GGYRCC 1 cut(s) 715
BsrDI GCAATG 4 cut(s) 364, 447, 452, 1401
BsrFI RCCGGY 1 cut(s) 1437
BsrI ACTGG 2 cut(s) 287, 825
BssAI RCCGGY 1 cut(s) 1437
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 5 cut(s) 144, 742, 792, 856, 876
BssNI GRCGYC 1 cut(s) 716
Bst2UI CCWGG 3 cut(s) 305, 331, 467
Bst4CI ACNGT 6 cut(s) 94, 275, 1031, 1042, 1268, 1366
Bst6I CTCTTC 3 cut(s) 152, 318, 663
BstACI GRCGYC 1 cut(s) 716
BstAPI GCANNNNNTGC 1 cut(s) 1228
BstC8I GCNNGC 2 cut(s) 420, 1420
BstDEI CTNAG 8 cut(s) 115, 129, 594, 609, 720, 746, 1425, 1456
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 1 cut(s) 719
BstHHI GCGC 1 cut(s) 718
BstKTI GATC 5 cut(s) 147, 745, 795, 859, 879
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 5 cut(s) 144, 742, 792, 856, 876
BstMWI GCNNNNNNNGC 4 cut(s) 435, 715, 956, 1228
BstNI CCWGG 3 cut(s) 305, 331, 467
BstNSI RCATGY 2 cut(s) 461, 1422
BstPAI GACNNNNGTC 1 cut(s) 345
BstSCI CCNGG 3 cut(s) 303, 329, 465
BstSFI CTRYAG 1 cut(s) 1264
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 3 cut(s) 238, 473, 946
BstV2I GAAGAC 3 cut(s) 345, 543, 774
Bsu15I ATCGAT 1 cut(s) 855
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 4 cut(s) 120, 438, 928, 1071
BsuTUI ATCGAT 1 cut(s) 855
BtsI GCAGTG 1 cut(s) 999
BtsIMutI CAGTG 4 cut(s) 43, 126, 999, 1464
BveI ACCTGC 1 cut(s) 1120
Cac8I GCNNGC 2 cut(s) 420, 1420
CciI TCATGA 1 cut(s) 1078
CfoI GCGC 1 cut(s) 718
Cfr10I RCCGGY 1 cut(s) 1437
Cfr13I GGNCC 2 cut(s) 77, 436
ClaI ATCGAT 1 cut(s) 855
CseI GACGC 3 cut(s) 295, 350, 899
Csp6I GTAC 2 cut(s) 55, 896
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 4 cut(s) 168, 458, 1079, 1419
CviQI GTAC 2 cut(s) 55, 896
DdeI CTNAG 8 cut(s) 115, 129, 594, 609, 720, 746, 1425, 1456
DinI GGCGCC 1 cut(s) 717
DpnI GATC 5 cut(s) 146, 744, 794, 858, 878
DpnII GATC 5 cut(s) 144, 742, 792, 856, 876
Eam1104I CTCTTC 3 cut(s) 152, 318, 663
EarI CTCTTC 3 cut(s) 152, 318, 663
Ecl136II GAGCTC 1 cut(s) 387
Eco147I AGGCCT 1 cut(s) 1071
Eco24I GRGCYC 1 cut(s) 389
Eco47I GGWCC 1 cut(s) 77
Eco53kI GAGCTC 1 cut(s) 387
Eco57I CTGAAG 3 cut(s) 47, 731, 907
EcoICRI GAGCTC 1 cut(s) 387
EcoRII CCWGG 3 cut(s) 303, 329, 465
EcoT38I GRGCYC 1 cut(s) 389
EgeI GGCGCC 1 cut(s) 717
EheI GGCGCC 1 cut(s) 717
FaeI CATG 4 cut(s) 171, 461, 1082, 1422
FalI AAGNNNNNCTT 2 cut(s) 1234, 1266
FaqI GGGAC 1 cut(s) 1296
FatI CATG 4 cut(s) 167, 457, 1078, 1418
FbaI TGATCA 2 cut(s) 144, 792
FblI GTMKAC 1 cut(s) 1431
Fnu4HI GCNGC 5 cut(s) 227, 487, 801, 957, 960
FriOI GRGCYC 1 cut(s) 389
Fsp4HI GCNGC 5 cut(s) 227, 487, 801, 957, 960
FspBI CTAG 1 cut(s) 834
GlaI GCGC 1 cut(s) 717
GluI GCNGC 5 cut(s) 227, 487, 801, 957, 960
HaeII RGCGCY 1 cut(s) 719
HaeIII GGCC 4 cut(s) 120, 438, 928, 1071
HapII CCGG 4 cut(s) 80, 494, 511, 1438
HgaI GACGC 3 cut(s) 295, 350, 899
HhaI GCGC 1 cut(s) 718
Hin1I GRCGYC 1 cut(s) 716
Hin1II CATG 4 cut(s) 171, 461, 1082, 1422
Hin6I GCGC 1 cut(s) 716
HinP1I GCGC 1 cut(s) 716
HinfI GANTC 5 cut(s) 123, 164, 182, 326, 1284
HpaII CCGG 4 cut(s) 80, 494, 511, 1438
HphI GGTGA 1 cut(s) 1075
Hpy166II GTNNAC 2 cut(s) 280, 1432
Hpy188I TCNGA 9 cut(s) 27, 110, 153, 399, 445, 483, 597, 812, 1426
Hpy188III TCNNGA 5 cut(s) 205, 494, 1079, 1202, 1242
Hpy8I GTNNAC 2 cut(s) 280, 1432
HpyAV CCTTC 7 cut(s) 130, 427, 592, 697, 706, 770, 1293
HpyCH4III ACNGT 6 cut(s) 94, 275, 1031, 1042, 1268, 1366
HpyCH4V TGCA 9 cut(s) 4, 177, 200, 452, 457, 489, 910, 962, 1222
HpyF10VI GCNNNNNNNGC 4 cut(s) 435, 715, 956, 1228
HpyF3I CTNAG 8 cut(s) 115, 129, 594, 609, 720, 746, 1425, 1456
Hsp92I GRCGYC 1 cut(s) 716
Hsp92II CATG 4 cut(s) 171, 461, 1082, 1422
HspAI GCGC 1 cut(s) 716
KasI GGCGCC 1 cut(s) 715
Kpn2I TCCGGA 1 cut(s) 493
Ksp22I TGATCA 2 cut(s) 144, 792
Kzo9I GATC 5 cut(s) 144, 742, 792, 856, 876
LmnI GCTCC 2 cut(s) 361, 947
Lsp1109I GCAGC 3 cut(s) 238, 473, 946
LweI GCATC 4 cut(s) 631, 789, 1300, 1394
MaeI CTAG 1 cut(s) 834
MaeIII GTNAC 3 cut(s) 193, 506, 1397
MalI GATC 5 cut(s) 146, 744, 794, 858, 878
MboI GATC 5 cut(s) 144, 742, 792, 856, 876
MboII GAAGA 9 cut(s) 40, 169, 335, 350, 548, 680, 779, 1126, 1129
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 3 cut(s) 61, 406, 757
Mly113I GGCGCC 1 cut(s) 716
MlyI GAGTC 3 cut(s) 176, 335, 1278
MmeI TCCRAC 3 cut(s) 760, 1061, 1305
MroI TCCGGA 1 cut(s) 493
MroXI GAANNNNTTC 2 cut(s) 32, 1049
MseI TTAA 4 cut(s) 17, 252, 297, 698
MslI CAYNNNNRTG 4 cut(s) 131, 172, 369, 1390
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 4 cut(s) 80, 494, 511, 1438
MspR9I CCNGG 3 cut(s) 305, 331, 467
Mva1269I GAATGC 2 cut(s) 102, 179
MvaI CCWGG 3 cut(s) 305, 331, 467
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 4 cut(s) 435, 715, 956, 1228
NarI GGCGCC 1 cut(s) 716
NdeII GATC 5 cut(s) 144, 742, 792, 856, 876
NlaIII CATG 4 cut(s) 171, 461, 1082, 1422
NlaIV GGNNCC 1 cut(s) 717
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 2 cut(s) 461, 1422
PaeI GCATGC 1 cut(s) 1422
PagI TCATGA 1 cut(s) 1078
PaqCI CACCTGC 1 cut(s) 1120
PceI AGGCCT 1 cut(s) 1071
PctI GAATGC 2 cut(s) 102, 179
PdmI GAANNNNTTC 2 cut(s) 32, 1049
PfeI GAWTC 2 cut(s) 123, 164
PflFI GACNNNGTC 1 cut(s) 289
PflMI CCANNNNNTGG 1 cut(s) 472
PfoI TCCNGGA 1 cut(s) 465
PkrI GCNGC 5 cut(s) 228, 488, 802, 958, 961
PleI GAGTC 3 cut(s) 176, 334, 1278
PluTI GGCGCC 1 cut(s) 719
PpsI GAGTC 3 cut(s) 176, 334, 1278
PshAI GACNNNNGTC 1 cut(s) 345
Psp124BI GAGCTC 1 cut(s) 389
Psp6I CCWGG 3 cut(s) 303, 329, 465
PspGI CCWGG 3 cut(s) 303, 329, 465
PspN4I GGNNCC 1 cut(s) 717
PspPI GGNCC 2 cut(s) 77, 436
PsyI GACNNNGTC 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 2 cut(s) 56, 897
RsaNI GTAC 2 cut(s) 55, 896
RseI CAYNNNNRTG 4 cut(s) 131, 172, 369, 1390
SacI GAGCTC 1 cut(s) 389
SaqAI TTAA 4 cut(s) 17, 252, 297, 698
SatI GCNGC 5 cut(s) 227, 487, 801, 957, 960
Sau3AI GATC 5 cut(s) 144, 742, 792, 856, 876
Sau96I GGNCC 2 cut(s) 77, 436
ScaI AGTACT 1 cut(s) 897
SchI GAGTC 3 cut(s) 176, 335, 1278
ScrFI CCNGG 3 cut(s) 305, 331, 467
SduI GDGCHC 1 cut(s) 389
SfaNI GCATC 4 cut(s) 631, 789, 1300, 1394
SfcI CTRYAG 1 cut(s) 1264
SfoI GGCGCC 1 cut(s) 717
SinI GGWCC 1 cut(s) 77
SmiMI CAYNNNNRTG 4 cut(s) 131, 172, 369, 1390
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
SphI GCATGC 1 cut(s) 1422
Sse9I AATT 3 cut(s) 61, 406, 757
SseBI AGGCCT 1 cut(s) 1071
SsiI CCGC 4 cut(s) 67, 239, 800, 956
SspDI GGCGCC 1 cut(s) 715
SspMI CTAG 1 cut(s) 834
SstI GAGCTC 1 cut(s) 389
StuI AGGCCT 1 cut(s) 1071
StyD4I CCNGG 3 cut(s) 303, 329, 465
TaaI ACNGT 6 cut(s) 94, 275, 1031, 1042, 1268, 1366
TaqI TCGA 5 cut(s) 321, 575, 855, 1104, 1203
TasI AATT 3 cut(s) 61, 406, 757
TatI WGTACW 1 cut(s) 895
TauI GCSGC 2 cut(s) 803, 959
TfiI GAWTC 2 cut(s) 123, 164
Tru1I TTAA 4 cut(s) 17, 252, 297, 698
Tru9I TTAA 4 cut(s) 17, 252, 297, 698
TscAI CASTG 4 cut(s) 43, 133, 999, 1464
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 3 cut(s) 226, 486, 959
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 5 cut(s) 149, 156, 170, 918, 1095
TspRI CASTG 4 cut(s) 43, 133, 999, 1464
Tth111I GACNNNGTC 1 cut(s) 289
Van91I CCANNNNNTGG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 406
XceI RCATGY 2 cut(s) 461, 1422
XmiI GTMKAC 1 cut(s) 1431
XmnI GAANNNNTTC 2 cut(s) 32, 1049
XspI CTAG 1 cut(s) 834
ZrmI AGTACT 1 cut(s) 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.