Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010477

Physical Location & Seq

Genomic Coordinates Forward (+)

38812612 .. 38815394

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0275600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAAGAAGTAATTCCTGATGTTAGCAGCCATGTAGTTTCTTATATAATTGGGCTTGATAGCCTGAAGGCAACTGGTCTTAGTGACAGTGCTTCATGTCAGATGGTTAGCGATATTAGGTTACGCATGGATGGGTTATTCAAGCTAAAGGAGCATGCAGTCCAATTTATTACAGGTTTTACTGCTTTATATACAAATGGACCAGCTGGTGGTGGTGTTTCGCAGCAGGAGATAGTTTCTCTGTACGAGAGGTTCTGTCAGCTCGATCATAGTTGCCGAGGTTTCATCTTCGTCGACGAGTTTTTGTCCGTACCGGAATTCGCACCCAATCCTCTCTCTCAGTTTTGGCTGGGTGGACGTAGATACTGGGGGAGAGGGATTGGAGCAAGACCACACTTGCTCTTAGGAGATGCTTCTGTATCATCAACGCCCAATTTCCTTTTCTCATCAGAGAGATTTGATCAAACAACAAAGCTACTTAGTTTTGGGGTGAATTCAGGTCTTCCTTTTTTCTCATCAGCTTCTGTAATTTCATATCAGAGGGTTGAATTCATTTTTAGAAAGATATTCAAGGGAGGCTTGACAAAGAATAAGCGGTTCTTTGCTTTGCTCAGCTCACCGGCATTGATGCAGATAGGGAAACTCTATGTTGGATATTATGTGGCTATGAAAGGGTTCTATGCTTTGCTCATCGGCATTGAGAACGGGGGAAGAAGGAGGAGAAGAAGAAGAGAGAGATCAGAAACTCTTGCTTGCTTGAGAGAAAACAAGTGGAAGGTTTTGCTTGCTATTACTGTTCCTGATTCAAGTGATCTATCTGTCAGAAGATTTGTGTTTCAGACCAGCACTTGCTATGTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

287

Amino Acids

32.26

Weight (kDa)

9.57

Isoelectric Point (pI)

48.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05600 AT1G05600 AT1G05600
fragaria_vesca	FvH4_4g01580 FvH4_7g16930
malus_domestica	MD12G1085500.v1.1
prunus_persica	Prupe.2G028400_v2.0.a1 Prupe.2G028400_v2.0.a1
pyrus_communis	pycom12g07260
rosa_chinensis	RchiOBHm_Chr1g0360171
rosa_laevigata	RLG00000027824
rosa_multiflora	Rmu_co8362791.1_g000001 Rmu_sc0007813.1_g000003 Rmu_ssc0000368.1_g000046
rosa_roxburghii	Rroxscaffold_4G00296340
rosa_rugosa	Rorug01G0275600
rosa_samantha	Rh1AG289300 Rh1BG255000 Rh1CG272300 Rh1DG284400
rosa_wichuraiana	Rw1G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	294
AciI	CCGC	1 cut(s)	595
AcsI	RAATTY	3 cut(s)	317, 493, 548
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	245, 312
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	142, 548, 571, 807, 860
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AluBI	AGCT	6 cut(s)	145, 206, 262, 475, 521, 615
AluI	AGCT	6 cut(s)	145, 206, 262, 475, 521, 615
AlwNI	CAGNNNCTG	1 cut(s)	524
ApeKI	GCWGC	2 cut(s)	27, 223
ApoI	RAATTY	3 cut(s)	317, 493, 548
Asp700I	GAANNNNTTC	2 cut(s)	12, 674
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	502, 609
AvaII	GGWCC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	39, 235
BccI	CCATC	2 cut(s)	97, 125
BclI	TGATCA	1 cut(s)	460
BisI	GCNGC	2 cut(s)	28, 224
BlpI	GCTNAGC	1 cut(s)	611
BlsI	GCNGC	2 cut(s)	29, 225
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	400, 618
BmuI	ACTGGG	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	494
Bpu1102I	GCTNAGC	1 cut(s)	611
BpuEI	CTTGAG	1 cut(s)	778
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	619
Bse1I	ACTGG	2 cut(s)	79, 371
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	2 cut(s)	353, 625
BseNI	ACTGG	2 cut(s)	79, 371
BseRI	GAGGAG	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	39, 235
BseYI	CCCAGC	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	314, 620
BslI	CCNNNNNNNGG	1 cut(s)	209
Bsp143I	GATC	4 cut(s)	265, 460, 737, 811
Bsp1720I	GCTNAGC	1 cut(s)	611
BspACI	CCGC	1 cut(s)	595
BspCNI	CTCAG	2 cut(s)	352, 624
BsrFI	RCCGGY	1 cut(s)	619
BsrI	ACTGG	2 cut(s)	79, 371
BssAI	RCCGGY	1 cut(s)	619
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	4 cut(s)	265, 460, 737, 811
Bst4CI	ACNGT	2 cut(s)	89, 796
Bst6I	CTCTTC	1 cut(s)	724
BstC8I	GCNNGC	3 cut(s)	156, 754, 786
BstDEI	CTNAG	5 cut(s)	80, 339, 403, 479, 611
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	4 cut(s)	268, 463, 740, 814
BstMBI	GATC	4 cut(s)	265, 460, 737, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	158
BstV1I	GCAGC	2 cut(s)	39, 235
BstV2I	GAAGAC	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	3 cut(s)	156, 754, 786
CaiI	CAGNNNCTG	1 cut(s)	524
Cfr10I	RCCGGY	1 cut(s)	619
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	244, 311
CviAII	CATG	4 cut(s)	32, 96, 127, 155
CviQI	GTAC	2 cut(s)	244, 311
DdeI	CTNAG	5 cut(s)	80, 339, 403, 479, 611
DpnI	GATC	4 cut(s)	267, 462, 739, 813
DpnII	GATC	4 cut(s)	265, 460, 737, 811
Eam1104I	CTCTTC	1 cut(s)	724
EarI	CTCTTC	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	86
EcoRI	GAATTC	3 cut(s)	317, 493, 548
FaeI	CATG	4 cut(s)	35, 99, 130, 158
FalI	AAGNNNNNCTT	4 cut(s)	563, 595, 584, 616
FatI	CATG	4 cut(s)	31, 95, 126, 154
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	28, 224
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	28, 224
GluI	GCNGC	2 cut(s)	28, 224
GsaI	CCCAGC	1 cut(s)	353
HapII	CCGG	2 cut(s)	314, 620
Hin1II	CATG	4 cut(s)	35, 99, 130, 158
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	1 cut(s)	803
HpaII	CCGG	2 cut(s)	314, 620
HphI	GGTGA	2 cut(s)	502, 609
Hpy166II	GTNNAC	2 cut(s)	295, 356
Hpy188I	TCNGA	6 cut(s)	102, 451, 540, 742, 824, 840
Hpy188III	TCNNGA	2 cut(s)	17, 800
Hpy8I	GTNNAC	2 cut(s)	295, 356
Hpy99I	CGWCG	2 cut(s)	296, 299
HpyAV	CCTTC	3 cut(s)	61, 708, 769
HpyCH4III	ACNGT	2 cut(s)	89, 796
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	2 cut(s)	158, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	5 cut(s)	80, 339, 403, 479, 611
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	4 cut(s)	35, 99, 130, 158
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	4 cut(s)	265, 460, 737, 811
LmnI	GCTCC	2 cut(s)	151, 383
Lsp1109I	GCAGC	2 cut(s)	39, 235
LweI	GCATC	2 cut(s)	400, 618
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	2 cut(s)	83, 120
MalI	GATC	4 cut(s)	267, 462, 739, 813
MboI	GATC	4 cut(s)	265, 460, 737, 811
MboII	GAAGA	8 cut(s)	17, 280, 494, 723, 735, 738, 741, 837
MluCI	AATT	8 cut(s)	12, 48, 164, 317, 433, 493, 528, 548
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	7 cut(s)	243, 272, 342, 368, 534, 569, 711
MroXI	GAANNNNTTC	2 cut(s)	12, 674
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	314, 620
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeII	GATC	4 cut(s)	265, 460, 737, 811
NlaIII	CATG	4 cut(s)	35, 99, 130, 158
NmeAIII	GCCGAG	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	83
NspI	RCATGY	1 cut(s)	158
PaeI	GCATGC	1 cut(s)	158
PdmI	GAANNNNTTC	2 cut(s)	12, 674
PfeI	GAWTC	1 cut(s)	803
PflMI	CCANNNNNTGG	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	29, 225
PspFI	CCCAGC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	200
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PstNI	CAGNNNCTG	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	2 cut(s)	245, 312
RsaNI	GTAC	2 cut(s)	244, 311
SalI	GTCGAC	1 cut(s)	293
SatI	GCNGC	2 cut(s)	28, 224
Sau3AI	GATC	4 cut(s)	265, 460, 737, 811
Sau96I	GGNCC	1 cut(s)	200
SfaNI	GCATC	2 cut(s)	400, 618
SgrDI	CGTCGACG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	757
SmoI	CTYRAG	1 cut(s)	757
SphI	GCATGC	1 cut(s)	158
Sse9I	AATT	8 cut(s)	12, 48, 164, 317, 433, 493, 528, 548
SsiI	CCGC	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	89, 796
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	264, 294
TasI	AATT	8 cut(s)	12, 48, 164, 317, 433, 493, 528, 548
TfiI	GAWTC	1 cut(s)	803
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	2 cut(s)	27, 223
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	5 cut(s)	84, 274, 522, 541, 683
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	3 cut(s)	317, 493, 548
XceI	RCATGY	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	294
XmnI	GAANNNNTTC	2 cut(s)	12, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.