Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8362791.1

Orthogroup ID

OG0010477

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1088

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8362791.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 845 bp

cacaatccaagtaccccaattaccgccacaatggtccggtctatgccaccatgattggcattctcggaagctcaggccgaatcactgagatgaaggaagtcattaatcagatgaagaatgactcctgtgaatgcaaagactctgtttttgtagctgccatcaagacctatgcaagagccgggctgctggacgaggcagtgtctctttttaagaacctttcacagttcaactgtgtgaactggacgcagtctttcaataccctggtggagattatggtcgaagagtccaagcttgaagacgcttgtcgcctttttgtggagcattgctgtgggtgggaagtgagctcaagggttcggtctttgaattttcttatgcttgctttgtgccagaagggccgttcggatattgcattgcatgttttccaagagatggattatcagagttgcaatccggatagggatagttaccggatactaatgagagggttgtgtgaagataggaggctgaatgaggcagcccatttgttgtattcaatgttttggaggatttctcagaagggttgtgctgaagatatagtgatatatagaatcttgttagatgcgttatgtaataatgggaagattgaagaggctgtggaaattcttggcaagattttaaggaaggggctgaaggcgcctaagaagtttcgccaccaacttgatcttagtcagtatacttatggtgaagacacagaaggcatcaagcgtttgatcaatgaggctctggtcagaggcggaaatcccagtttggcaagttacagtgctatggcaatcgatctttacaacgaaaataagattgtcgaggcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

281

Amino Acids

32.01

Weight (kDa)

6.6

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05600 AT1G05600 AT1G05600
fragaria_vesca	FvH4_4g01580 FvH4_7g16930
malus_domestica	MD12G1085500.v1.1
prunus_persica	Prupe.2G028400_v2.0.a1 Prupe.2G028400_v2.0.a1
pyrus_communis	pycom12g07260
rosa_chinensis	RchiOBHm_Chr1g0360171
rosa_laevigata	RLG00000027824
rosa_multiflora	Rmu_co8362791.1_g000001 Rmu_sc0007813.1_g000003 Rmu_ssc0000368.1_g000046
rosa_roxburghii	Rroxscaffold_4G00296340
rosa_rugosa	Rorug01G0275600
rosa_samantha	Rh1AG289300 Rh1BG255000 Rh1CG272300 Rh1DG284400
rosa_wichuraiana	Rw1G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	672
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	712
AccIII	TCCGGA	1 cut(s)	450
AciI	CCGC	2 cut(s)	24, 773
AcsI	RAATTY	2 cut(s)	363, 638
AcuI	CTGAAG	2 cut(s)	587, 688
AcyI	GRCGYC	1 cut(s)	673
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	2 cut(s)	315, 429
AgsI	TTSAA	6 cut(s)	228, 255, 295, 363, 533, 625
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	4 cut(s)	71, 154, 291, 344
AluI	AGCT	4 cut(s)	71, 154, 291, 344
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	206
Aor13HI	TCCGGA	1 cut(s)	450
AoxI	GGCC	2 cut(s)	75, 393
ApeKI	GCWGC	3 cut(s)	154, 183, 514
ApoI	RAATTY	2 cut(s)	363, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	130, 162
AseI	ATTAAT	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	675
AspS9I	GGNCC	2 cut(s)	34, 393
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	733
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	2 cut(s)	302, 731
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	141, 170, 526
BccI	CCATC	2 cut(s)	166, 423
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	464
BclI	TGATCA	1 cut(s)	749
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	676
BfuI	GTATCC	1 cut(s)	464
BglI	GCCNNNNNGGC	1 cut(s)	392
BisI	GCNGC	3 cut(s)	155, 184, 515
BlsI	GCNGC	3 cut(s)	156, 185, 516
Bme1390I	CCNGG	2 cut(s)	180, 262
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 393
BmiI	GGNNCC	1 cut(s)	674
BmrFI	CCNGG	2 cut(s)	180, 262
BmrI	ACTGGG	1 cut(s)	776
BmsI	GCATC	2 cut(s)	588, 746
BmuI	ACTGGG	1 cut(s)	776
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	2 cut(s)	302, 731
BplI	GAGNNNNNCTC	2 cut(s)	534, 566
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	330
BpuMI	CCSGG	1 cut(s)	180
Bsa29I	ATCGAT	1 cut(s)	812
BsaHI	GRCGYC	1 cut(s)	673
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	3 cut(s)	36, 450, 467
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 429
Bse1I	ACTGG	2 cut(s)	244, 782
Bse3DI	GCAATG	2 cut(s)	321, 409
BseAI	TCCGGA	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	262
BseCI	ATCGAT	1 cut(s)	812
BseDI	CCNNGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	2 cut(s)	315, 429
BseMI	GCAATG	2 cut(s)	321, 409
BseMII	CTCAG	3 cut(s)	77, 86, 565
BseNI	ACTGG	2 cut(s)	244, 782
BseXI	GCAGC	3 cut(s)	141, 170, 526
BshFI	GGCC	3 cut(s)	77, 395, 844
BshNI	GGYRCC	1 cut(s)	672
BshVI	ATCGAT	1 cut(s)	812
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	4 cut(s)	37, 179, 451, 468
BslI	CCNNNNNNNGG	2 cut(s)	315, 429
BsmAI	GTCTC	1 cut(s)	206
BsmI	GAATGC	2 cut(s)	59, 136
BsnI	GGCC	3 cut(s)	77, 395, 844
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp13I	TCCGGA	1 cut(s)	450
Bsp143I	GATC	3 cut(s)	699, 749, 813
BspACI	CCGC	2 cut(s)	24, 773
BspANI	GGCC	3 cut(s)	77, 395, 844
BspCNI	CTCAG	3 cut(s)	78, 85, 564
BspDI	ATCGAT	1 cut(s)	812
BspEI	TCCGGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	674
BspT107I	GGYRCC	1 cut(s)	672
BsrDI	GCAATG	2 cut(s)	321, 409
BsrI	ACTGG	2 cut(s)	244, 782
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	3 cut(s)	699, 749, 813
BssNAI	GTATAC	1 cut(s)	713
BssNI	GRCGYC	1 cut(s)	673
Bst1107I	GTATAC	1 cut(s)	713
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	3 cut(s)	224, 232, 799
Bst6I	CTCTTC	2 cut(s)	275, 620
BstACI	GRCGYC	1 cut(s)	673
BstC8I	GCNNGC	1 cut(s)	377
BstDEI	CTNAG	5 cut(s)	72, 86, 551, 677, 703
BstH2I	RGCGCY	1 cut(s)	676
BstHHI	GCGC	1 cut(s)	675
BstKTI	GATC	3 cut(s)	702, 752, 816
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	3 cut(s)	699, 749, 813
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 672
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	418
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	178, 260
BstV1I	GCAGC	3 cut(s)	141, 170, 526
BstV2I	GAAGAC	2 cut(s)	302, 731
BstZ17I	GTATAC	1 cut(s)	713
Bsu15I	ATCGAT	1 cut(s)	812
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	3 cut(s)	77, 395, 844
BsuTUI	ATCGAT	1 cut(s)	812
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	3 cut(s)	83, 203, 804
Cac8I	GCNNGC	1 cut(s)	377
CfoI	GCGC	1 cut(s)	675
Cfr13I	GGNCC	2 cut(s)	34, 393
ClaI	ATCGAT	1 cut(s)	812
CseI	GACGC	2 cut(s)	252, 307
Csp6I	GTAC	1 cut(s)	12
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	2 cut(s)	51, 415
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	5 cut(s)	72, 86, 551, 677, 703
DinI	GGCGCC	1 cut(s)	674
DpnI	GATC	3 cut(s)	701, 751, 815
DpnII	GATC	3 cut(s)	699, 749, 813
Eam1104I	CTCTTC	2 cut(s)	275, 620
EarI	CTCTTC	2 cut(s)	275, 620
EciI	GGCGGA	1 cut(s)	788
Ecl136II	GAGCTC	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	34
Eco53kI	GAGCTC	1 cut(s)	344
Eco57I	CTGAAG	2 cut(s)	587, 688
EcoICRI	GAGCTC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	346
EgeI	GGCGCC	1 cut(s)	674
EheI	GGCGCC	1 cut(s)	674
FaeI	CATG	2 cut(s)	54, 418
FatI	CATG	2 cut(s)	50, 414
FbaI	TGATCA	1 cut(s)	749
FblI	GTMKAC	1 cut(s)	712
Fnu4HI	GCNGC	3 cut(s)	155, 184, 515
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	3 cut(s)	155, 184, 515
GlaI	GCGC	1 cut(s)	674
GluI	GCNGC	3 cut(s)	155, 184, 515
HaeII	RGCGCY	1 cut(s)	676
HaeIII	GGCC	3 cut(s)	77, 395, 844
HapII	CCGG	4 cut(s)	37, 179, 451, 468
HgaI	GACGC	2 cut(s)	252, 307
HhaI	GCGC	1 cut(s)	675
Hin1I	GRCGYC	1 cut(s)	673
Hin1II	CATG	2 cut(s)	54, 418
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	5 cut(s)	80, 121, 139, 283, 587
HpaII	CCGG	4 cut(s)	37, 179, 451, 468
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	2 cut(s)	237, 713
Hpy188I	TCNGA	6 cut(s)	67, 110, 402, 440, 554, 769
Hpy188III	TCNNGA	2 cut(s)	162, 451
Hpy8I	GTNNAC	2 cut(s)	237, 713
HpyAV	CCTTC	6 cut(s)	87, 384, 549, 654, 663, 727
HpyCH4III	ACNGT	3 cut(s)	224, 232, 799
HpyCH4V	TGCA	5 cut(s)	134, 172, 409, 414, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 672
HpyF3I	CTNAG	5 cut(s)	72, 86, 551, 677, 703
Hsp92I	GRCGYC	1 cut(s)	673
Hsp92II	CATG	2 cut(s)	54, 418
HspAI	GCGC	1 cut(s)	673
KasI	GGCGCC	1 cut(s)	672
Kpn2I	TCCGGA	1 cut(s)	450
Ksp22I	TGATCA	1 cut(s)	749
Kzo9I	GATC	3 cut(s)	699, 749, 813
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	3 cut(s)	141, 170, 526
LweI	GCATC	2 cut(s)	588, 746
MaeIII	GTNAC	2 cut(s)	463, 793
MalI	GATC	3 cut(s)	701, 751, 815
MboI	GATC	3 cut(s)	699, 749, 813
MboII	GAAGA	8 cut(s)	126, 292, 307, 505, 580, 630, 637, 736
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	3 cut(s)	18, 363, 638
Mly113I	GGCGCC	1 cut(s)	673
MlyI	GAGTC	3 cut(s)	115, 133, 292
MnlI	CCTC	9 cut(s)	186, 475, 494, 504, 536, 621, 750, 763, 834
MroI	TCCGGA	1 cut(s)	450
MseI	TTAA	3 cut(s)	104, 209, 655
MslI	CAYNNNNRTG	2 cut(s)	88, 326
MspI	CCGG	4 cut(s)	37, 179, 451, 468
MspR9I	CCNGG	2 cut(s)	180, 262
Mva1269I	GAATGC	2 cut(s)	59, 136
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	392, 672
NarI	GGCGCC	1 cut(s)	673
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	699, 749, 813
NlaIII	CATG	2 cut(s)	54, 418
NlaIV	GGNNCC	1 cut(s)	674
NspI	RCATGY	1 cut(s)	418
PctI	GAATGC	2 cut(s)	59, 136
PfeI	GAWTC	2 cut(s)	80, 587
PflFI	GACNNNGTC	1 cut(s)	246
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	3 cut(s)	156, 185, 516
PleI	GAGTC	3 cut(s)	115, 133, 291
PluTI	GGCGCC	1 cut(s)	676
PpsI	GAGTC	3 cut(s)	115, 133, 291
PshAI	GACNNNNGTC	1 cut(s)	302
PshBI	ATTAAT	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	674
PspPI	GGNCC	2 cut(s)	34, 393
PsyI	GACNNNGTC	1 cut(s)	246
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	2 cut(s)	88, 326
SacI	GAGCTC	1 cut(s)	346
SaqAI	TTAA	3 cut(s)	104, 209, 655
SatI	GCNGC	3 cut(s)	155, 184, 515
Sau3AI	GATC	3 cut(s)	699, 749, 813
Sau96I	GGNCC	2 cut(s)	34, 393
SchI	GAGTC	3 cut(s)	115, 133, 292
ScrFI	CCNGG	2 cut(s)	180, 262
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	6 cut(s)	73, 156, 169, 218, 293, 346
SfaNI	GCATC	2 cut(s)	588, 746
SfoI	GGCGCC	1 cut(s)	674
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	2 cut(s)	88, 326
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	3 cut(s)	18, 363, 638
SsiI	CCGC	2 cut(s)	24, 773
SspDI	GGCGCC	1 cut(s)	672
SstI	GAGCTC	1 cut(s)	346
StyD4I	CCNGG	2 cut(s)	178, 260
TaaI	ACNGT	3 cut(s)	224, 232, 799
TaqI	TCGA	3 cut(s)	278, 812, 839
TaqII	GACCGA	1 cut(s)	344
TasI	AATT	3 cut(s)	18, 363, 638
TfiI	GAWTC	2 cut(s)	80, 587
Tru1I	TTAA	3 cut(s)	104, 209, 655
Tru9I	TTAA	3 cut(s)	104, 209, 655
TscAI	CASTG	3 cut(s)	90, 203, 804
TseI	GCWGC	3 cut(s)	154, 183, 514
TspDTI	ATGAA	2 cut(s)	106, 127
TspRI	CASTG	3 cut(s)	90, 203, 804
Tth111I	GACNNNGTC	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	429
VpaK11BI	GGWCC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	104
XapI	RAATTY	2 cut(s)	363, 638
XceI	RCATGY	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.