Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010477

Physical Location & Seq

Genomic Coordinates Forward (+)

2934008 .. 2936614

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G028400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1512 bp

ATGAGTATAAGATGGCCGAGGCTTCTAACACCCACGCACCTCTCTCAGATTATACGAAAGCAGAAAAACCCATTAACAGCTCTCCAAATTTTCAGTGAAGCTAAATGCAAATACCCCAATTACCGTCACAACGGTCCAGTTTATGCCAACATGATCAGCATACTCGGAAACTCAGGCCGAATCAATGAGATGAAGGAAGTAATTAATGAGATGAAAAACGACTCCTGTGAATGCAAAGATTCAGTTTTTGTTTCTGTAATTAAGACCTATGCAAGAGCTGGGTTGCTGGACGAGGCAGTGTCTCTTTTCAAGAACATTTCACAGTTCAACTGTGTGAATTGGACGCAGTCTTTCAATACCCTTTTGGAGATTATGGTAAAAGAGTCCAAGCTTGAAGCAGCTCATCGTATTTTCATGGAGCATTGTTGTGGATGGGAAGTGAGCTCTCGGGTTCCGTCCTTGAATTTGCTTATGCTTGCTTTGTGCCAAAAGGGTCGTTCAGATATTGCACTGCAAGTTTTCCAAGAGATGGATTATCAAAGTTGCAATCCGGATAGGGAAAGTTACCGGATACTAATGAGAGGGTTGTGTGAAGATAAGAGGCTGAACGAGGCAACCCATTTGTTGTATTCAATGTTTTGGAGGATTTCTCAGAAGGGTTGTGGTGAAGATGTTGTGATTTACAGAACCTTGTTAGATGCCTTGTGTGATAATGGGCAGGTTGAAGATGCTGTGGAGATTCTTGGTAAGATATTAAGGAAGGGGCTCAAGGCCCCTAAGCGGTTTCGCCACAATCTTGATCTCAGCCATTATGGTAATGGCGAAGACACGGAAGGCATTAAGCGTTTGATCAATGAAGCTCTGGTCAGAGGTGGGATACCCAGTTTGGCTAGTTACAGTGCTATGGCAATCGATCTCTATGATGAAAATAAGGTTGGTGAGGCTGACAGAGTACTGAAAGAAATGCAAGACAGAGGCTTTAGGCCAACAGCTTTGGTCTTTGAAGCAAAGGCAGCCGCATTGTGTAGGGAAAGGAAAGTTGTTGAAGCAGTGGAGGTGATTGAAAAGGAGATGGTGGAGGCAAACTGTGTTCCAACTGTAAGAGTGTATAGTGTTGTGGTAAGAGGCCTTTGTAGCGAAGGGCAGTCTGTTTTGGCCATTTTGTATCTGAAGAAGATGGAAAAGCAGGTGGGTTGTGTTGCAGACAAGAAAACGTATGGCATTTTGGTCGATGGGCTTTGTGGGGAGAGTAGATTTCTTGAAGCAAGCAGAGTATTGCAGGAGATGTTGATCAAGTCACATTGGCCTTGTGCTGAGACTTACAATAGAGTTATTACTGGCCTTTGCTCAGTGGGAAAGCAATATGAAGCTGTTATGTGGTTGGAGGAGATGACAAGTCGGGCTATGCTACCGGAATATTCTGTATGGAGCTCATTGGTGGCATCTGTGTGTTGTAACATGGCCAACATTGAGGTTTGCTCCGACGCCTATAAGAGGCTAAAGAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

504

Amino Acids

56.94

Weight (kDa)

7.96

Isoelectric Point (pI)

37.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05600 AT1G05600 AT1G05600
fragaria_vesca	FvH4_4g01580 FvH4_7g16930
malus_domestica	MD12G1085500.v1.1
prunus_persica	Prupe.2G028400_v2.0.a1 Prupe.2G028400_v2.0.a1
pyrus_communis	pycom12g07260
rosa_chinensis	RchiOBHm_Chr1g0360171
rosa_laevigata	RLG00000027824
rosa_multiflora	Rmu_co8362791.1_g000001 Rmu_sc0007813.1_g000003 Rmu_ssc0000368.1_g000046
rosa_roxburghii	Rroxscaffold_4G00296340
rosa_rugosa	Rorug01G0275600
rosa_samantha	Rh1AG289300 Rh1BG255000 Rh1CG272300 Rh1DG284400
rosa_wichuraiana	Rw1G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1177
Acc36I	ACCTGC	2 cut(s)	709, 1177
AccB7I	CCANNNNNTGG	1 cut(s)	529
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	2 cut(s)	781, 1017
AcoI	YGGCCR	3 cut(s)	14, 1155, 1461
AcsI	RAATTY	2 cut(s)	87, 463
AcuI	CTGAAG	1 cut(s)	1190
AcyI	GRCGYC	1 cut(s)	1485
AfaI	GTAC	1 cut(s)	954
AfiI	CCNNNNNNNGG	3 cut(s)	529, 780, 1494
AjuI	GAANNNNNNNTTGG	2 cut(s)	918, 950
Alw21I	GWGCWC	2 cut(s)	446, 1433
Alw26I	GTCTC	2 cut(s)	306, 1310
Ama87I	CYCGRG	1 cut(s)	447
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	9 cut(s)	14, 175, 771, 983, 1126, 1155, 1304, 1339, 1461
ApeKI	GCWGC	2 cut(s)	398, 1013
ApoI	RAATTY	2 cut(s)	87, 463
AseI	ATTAAT	1 cut(s)	204
AspS9I	GGNCC	2 cut(s)	134, 772
AsuHPI	GGTGA	3 cut(s)	677, 950, 1069
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	134
BalI	TGGCCA	2 cut(s)	1157, 1463
BanII	GRGCYC	3 cut(s)	446, 768, 1433
BbsI	GAAGAC	1 cut(s)	831
Bbv12I	GWGCWC	2 cut(s)	446, 1433
BbvI	GCAGC	2 cut(s)	410, 1025
BccI	CCATC	6 cut(s)	6, 426, 523, 1066, 1171, 1226
BcgI	CGANNNNNNTGC	2 cut(s)	1210, 1244
BciVI	GTATCC	2 cut(s)	564, 870
BclI	TGATCA	3 cut(s)	153, 849, 1290
BcoDI	GTCTC	2 cut(s)	306, 1310
BfaI	CTAG	1 cut(s)	891
BfuAI	ACCTGC	2 cut(s)	709, 1177
BfuI	GTATCC	2 cut(s)	564, 870
BisI	GCNGC	3 cut(s)	399, 1014, 1017
BlsI	GCNGC	3 cut(s)	400, 1015, 1018
BmcAI	AGTACT	1 cut(s)	954
Bme18I	GGWCC	1 cut(s)	134
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	2 cut(s)	134, 772
BmiI	GGNNCC	2 cut(s)	453, 774
BmrI	ACTGGG	1 cut(s)	876
BmsI	GCATC	3 cut(s)	688, 718, 1451
BmuI	ACTGGG	1 cut(s)	876
BpiI	GAAGAC	1 cut(s)	831
BplI	GAGNNNNNCTC	4 cut(s)	634, 666, 1463, 1495
Bpu10I	CCTNAGC	1 cut(s)	777
BpuEI	CTTGAG	1 cut(s)	752
Bsa29I	ATCGAT	1 cut(s)	912
BsaBI	GATNNNNATC	1 cut(s)	1289
BsaHI	GRCGYC	1 cut(s)	1485
BsaJI	CCNNGG	1 cut(s)	17
BsaWI	WCCGGW	3 cut(s)	550, 567, 1411
Bsc4I	CCNNNNNNNGG	3 cut(s)	529, 780, 1494
Bse1I	ACTGG	3 cut(s)	137, 882, 1342
Bse8I	GATNNNNATC	1 cut(s)	1289
BseAI	TCCGGA	1 cut(s)	550
BseCI	ATCGAT	1 cut(s)	912
BseDI	CCNNGG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	437
BseJI	GATNNNNATC	1 cut(s)	1289
BseLI	CCNNNNNNNGG	3 cut(s)	529, 780, 1494
BseMII	CTCAG	6 cut(s)	59, 186, 665, 817, 1305, 1362
BseNI	ACTGG	3 cut(s)	137, 882, 1342
BseRI	GAGGAG	1 cut(s)	1400
BseXI	GCAGC	2 cut(s)	410, 1025
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	9 cut(s)	16, 177, 773, 985, 1128, 1157, 1306, 1341, 1463
BshVI	ATCGAT	1 cut(s)	912
BsiHKAI	GWGCWC	2 cut(s)	446, 1433
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	3 cut(s)	551, 568, 1412
BslI	CCNNNNNNNGG	3 cut(s)	529, 780, 1494
BsmAI	GTCTC	2 cut(s)	306, 1310
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	9 cut(s)	16, 177, 773, 985, 1128, 1157, 1306, 1341, 1463
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	3 cut(s)	446, 768, 1433
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	5 cut(s)	153, 799, 849, 913, 1290
BspACI	CCGC	2 cut(s)	781, 1017
BspANI	GGCC	9 cut(s)	16, 177, 773, 985, 1128, 1157, 1306, 1341, 1463
BspCNI	CTCAG	6 cut(s)	58, 185, 664, 816, 1306, 1361
BspDI	ATCGAT	1 cut(s)	912
BspEI	TCCGGA	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	453, 774
BspMI	ACCTGC	2 cut(s)	709, 1177
BsrI	ACTGG	3 cut(s)	137, 882, 1342
BssECI	CCNNGG	1 cut(s)	17
BssMI	GATC	5 cut(s)	153, 799, 849, 913, 1290
BssNI	GRCGYC	1 cut(s)	1485
Bst4CI	ACNGT	7 cut(s)	125, 134, 324, 332, 899, 1088, 1099
BstACI	GRCGYC	1 cut(s)	1485
BstC8I	GCNNGC	2 cut(s)	477, 1267
BstDEI	CTNAG	7 cut(s)	45, 172, 651, 777, 803, 1314, 1348
BstENI	CCTNNNNNAGG	1 cut(s)	1492
BstF5I	GGATG	1 cut(s)	437
BstKTI	GATC	5 cut(s)	156, 802, 852, 916, 1293
BstMAI	GTCTC	2 cut(s)	306, 1310
BstMBI	GATC	5 cut(s)	153, 799, 849, 913, 1290
BstMWI	GCNNNNNNNGC	2 cut(s)	1013, 1134
BstV1I	GCAGC	2 cut(s)	410, 1025
BstV2I	GAAGAC	1 cut(s)	831
Bsu15I	ATCGAT	1 cut(s)	912
BsuI	GTATCC	2 cut(s)	564, 870
BsuRI	GGCC	9 cut(s)	16, 177, 773, 985, 1128, 1157, 1306, 1341, 1463
BsuTUI	ATCGAT	1 cut(s)	912
BtsCI	GGATG	1 cut(s)	437
BtsI	GCAGTG	3 cut(s)	303, 509, 1056
BtsIMutI	CAGTG	6 cut(s)	100, 303, 509, 904, 1056, 1356
BveI	ACCTGC	2 cut(s)	709, 1177
Cac8I	GCNNGC	2 cut(s)	477, 1267
Cfr13I	GGNCC	2 cut(s)	134, 772
ClaI	ATCGAT	1 cut(s)	912
CseI	GACGC	2 cut(s)	352, 1493
Csp6I	GTAC	1 cut(s)	953
CviAII	CATG	3 cut(s)	151, 415, 1459
CviQI	GTAC	1 cut(s)	953
DdeI	CTNAG	7 cut(s)	45, 172, 651, 777, 803, 1314, 1348
DpnI	GATC	5 cut(s)	155, 801, 851, 915, 1292
DpnII	GATC	5 cut(s)	153, 799, 849, 913, 1290
EaeI	YGGCCR	3 cut(s)	14, 1155, 1461
Ecl136II	GAGCTC	2 cut(s)	444, 1431
Eco147I	AGGCCT	1 cut(s)	1128
Eco24I	GRGCYC	3 cut(s)	446, 768, 1433
Eco47I	GGWCC	1 cut(s)	134
Eco53kI	GAGCTC	2 cut(s)	444, 1431
Eco57I	CTGAAG	1 cut(s)	1190
Eco88I	CYCGRG	1 cut(s)	447
EcoICRI	GAGCTC	2 cut(s)	444, 1431
EcoNI	CCTNNNNNAGG	1 cut(s)	1492
EcoO109I	RGGNCCY	1 cut(s)	772
EcoT38I	GRGCYC	3 cut(s)	446, 768, 1433
FaeI	CATG	3 cut(s)	154, 418, 1462
FatI	CATG	3 cut(s)	150, 414, 1458
FbaI	TGATCA	3 cut(s)	153, 849, 1290
Fnu4HI	GCNGC	3 cut(s)	399, 1014, 1017
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	3 cut(s)	446, 768, 1433
Fsp4HI	GCNGC	3 cut(s)	399, 1014, 1017
FspBI	CTAG	1 cut(s)	891
GluI	GCNGC	3 cut(s)	399, 1014, 1017
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	9 cut(s)	16, 177, 773, 985, 1128, 1157, 1306, 1341, 1463
HapII	CCGG	3 cut(s)	551, 568, 1412
HgaI	GACGC	2 cut(s)	352, 1493
Hin1I	GRCGYC	1 cut(s)	1485
Hin1II	CATG	3 cut(s)	154, 418, 1462
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	5 cut(s)	180, 221, 239, 383, 739
HpaII	CCGG	3 cut(s)	551, 568, 1412
HphI	GGTGA	3 cut(s)	677, 950, 1069
Hpy188I	TCNGA	7 cut(s)	48, 167, 502, 654, 869, 1170, 1483
Hpy188III	TCNNGA	5 cut(s)	310, 551, 797, 1259, 1509
Hpy99I	CGWCG	1 cut(s)	1487
HpyAV	CCTTC	5 cut(s)	187, 649, 754, 827, 1133
HpyCH4III	ACNGT	7 cut(s)	125, 134, 324, 332, 899, 1088, 1099
HpyCH4IV	ACGT	1 cut(s)	1214
HpyCH4V	TGCA	9 cut(s)	108, 234, 272, 509, 514, 546, 967, 1202, 1279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1013, 1134
HpyF3I	CTNAG	7 cut(s)	45, 172, 651, 777, 803, 1314, 1348
HpySE526I	ACGT	1 cut(s)	1214
Hsp92I	GRCGYC	1 cut(s)	1485
Hsp92II	CATG	3 cut(s)	154, 418, 1462
Kpn2I	TCCGGA	1 cut(s)	550
Ksp22I	TGATCA	3 cut(s)	153, 849, 1290
Kzo9I	GATC	5 cut(s)	153, 799, 849, 913, 1290
LmnI	GCTCC	3 cut(s)	418, 1428, 1484
Lsp1109I	GCAGC	2 cut(s)	410, 1025
LweI	GCATC	3 cut(s)	688, 718, 1451
MaeI	CTAG	1 cut(s)	891
MaeII	ACGT	1 cut(s)	1214
MaeIII	GTNAC	5 cut(s)	125, 563, 893, 1296, 1454
MalI	GATC	5 cut(s)	155, 801, 851, 915, 1292
MboI	GATC	5 cut(s)	153, 799, 849, 913, 1290
MboII	GAAGA	6 cut(s)	605, 680, 737, 836, 1183, 1186
MhlI	GDGCHC	3 cut(s)	446, 768, 1433
MlsI	TGGCCA	2 cut(s)	1157, 1463
MluCI	AATT	6 cut(s)	87, 118, 201, 258, 337, 463
MluNI	TGGCCA	2 cut(s)	1157, 1463
MlyI	GAGTC	2 cut(s)	215, 392
MmeI	TCCRAC	3 cut(s)	1118, 1362, 1506
Mox20I	TGGCCA	2 cut(s)	1157, 1463
MroI	TCCGGA	1 cut(s)	550
MscI	TGGCCA	2 cut(s)	1157, 1463
MseI	TTAA	5 cut(s)	74, 204, 261, 755, 840
MslI	CAYNNNNRTG	2 cut(s)	426, 1447
Msp20I	TGGCCA	2 cut(s)	1157, 1463
MspI	CCGG	3 cut(s)	551, 568, 1412
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	1013, 1134
NdeII	GATC	5 cut(s)	153, 799, 849, 913, 1290
NlaIII	CATG	3 cut(s)	154, 418, 1462
NlaIV	GGNNCC	2 cut(s)	453, 774
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	2 cut(s)	125, 1296
PaqCI	CACCTGC	1 cut(s)	1177
PceI	AGGCCT	1 cut(s)	1128
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	3 cut(s)	180, 239, 739
PflFI	GACNNNGTC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	529
PkrI	GCNGC	3 cut(s)	400, 1015, 1018
PleI	GAGTC	2 cut(s)	215, 391
PpsI	GAGTC	2 cut(s)	215, 391
PshBI	ATTAAT	1 cut(s)	204
Psp124BI	GAGCTC	2 cut(s)	446, 1433
PspFI	CCCAGC	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	453, 774
PspPI	GGNCC	2 cut(s)	134, 772
PsyI	GACNNNGTC	1 cut(s)	346
RsaI	GTAC	1 cut(s)	954
RsaNI	GTAC	1 cut(s)	953
RseI	CAYNNNNRTG	2 cut(s)	426, 1447
SacI	GAGCTC	2 cut(s)	446, 1433
SaqAI	TTAA	5 cut(s)	74, 204, 261, 755, 840
SatI	GCNGC	3 cut(s)	399, 1014, 1017
Sau3AI	GATC	5 cut(s)	153, 799, 849, 913, 1290
Sau96I	GGNCC	2 cut(s)	134, 772
ScaI	AGTACT	1 cut(s)	954
SchI	GAGTC	2 cut(s)	215, 392
SduI	GDGCHC	3 cut(s)	446, 768, 1433
SfaNI	GCATC	3 cut(s)	688, 718, 1451
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	426, 1447
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	6 cut(s)	87, 118, 201, 258, 337, 463
SseBI	AGGCCT	1 cut(s)	1128
SsiI	CCGC	2 cut(s)	781, 1017
SspI	AATATT	1 cut(s)	1418
SspMI	CTAG	1 cut(s)	891
SstI	GAGCTC	2 cut(s)	446, 1433
StuI	AGGCCT	1 cut(s)	1128
TaaI	ACNGT	7 cut(s)	125, 134, 324, 332, 899, 1088, 1099
TaiI	ACGT	1 cut(s)	1217
TaqI	TCGA	2 cut(s)	912, 1230
TasI	AATT	6 cut(s)	87, 118, 201, 258, 337, 463
TatI	WGTACW	1 cut(s)	952
TauI	GCSGC	1 cut(s)	1019
TfiI	GAWTC	3 cut(s)	180, 239, 739
Tru1I	TTAA	5 cut(s)	74, 204, 261, 755, 840
Tru9I	TTAA	5 cut(s)	74, 204, 261, 755, 840
TscAI	CASTG	6 cut(s)	100, 303, 516, 904, 1056, 1356
TseFI	GTSAC	2 cut(s)	125, 1296
TseI	GCWGC	2 cut(s)	398, 1013
Tsp45I	GTSAC	2 cut(s)	125, 1296
TspDTI	ATGAA	6 cut(s)	206, 227, 403, 870, 939, 1380
TspGWI	ACGGA	2 cut(s)	444, 845
TspRI	CASTG	6 cut(s)	100, 303, 516, 904, 1056, 1356
Tth111I	GACNNNGTC	1 cut(s)	346
Van91I	CCANNNNNTGG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	134
VspI	ATTAAT	1 cut(s)	204
XagI	CCTNNNNNAGG	1 cut(s)	1492
XapI	RAATTY	2 cut(s)	87, 463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	815
XspI	CTAG	1 cut(s)	891
ZrmI	AGTACT	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.