FvH4_4g02960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017175
Physical Location & Seq
Reverse (-)
2592199 .. 2592522
324 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02960.t1

Sequence Viewer

Length: 324 bp
ATGGGGCTTGTGAATACCGCTTTGGCTGTGCTGCTGCTTCTTTGTGTTCTACATGTACAACCCAACAGAGCTAGTAGGGTACTCTACAATGATGGAATGCTAGTGAAGCAAGAACTGATGAGCTTACAGTCCCTTCCTAGAGGTGAGACCCCTCCAACTGGATCCTCTAGTTGCACCTACATACCCGGTACAGGAGGATCGAGTTGCCCTCCTCTGAAAGTGAAGAACTTTGCGGGAGGGCATGGCCAGCCTCATCATCATCATGCTTCTGCTTATCCTCGTCTTGTGGCTCAGTTTGGTGTGGCTACCAATCAGAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.39

Weight (kDa)

9.45

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23123
fragaria_vesca FvH4_4g02960
prunus_persica Prupe.1G033100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0391021
rosa_laevigata RLG00000009905
rosa_multiflora Rmu_sc0001824.1_g000025 Rmu_sc0016732.1_g000006
rosa_roxburghii Rroxscaffold_5G00336850
rosa_rugosa Rorug03G0332700
rosa_samantha Rh4AG034200 Rh4BG028900 Rh4CG037600 Rh4DG031600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 18, 233
AclWI GGATC 3 cut(s) 156, 169, 205
AcoI YGGCCR 1 cut(s) 244
AfaI GTAC 3 cut(s) 57, 81, 190
AfiI CCNNNNNNNGG 2 cut(s) 158, 191
AflIII ACRYGT 1 cut(s) 52
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 71, 123
AluI AGCT 2 cut(s) 71, 123
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 3 cut(s) 156, 169, 205
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 2 cut(s) 31, 34
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 155
BalI TGGCCA 1 cut(s) 246
BamHI GGATCC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 18, 21
BccI CCATC 1 cut(s) 86
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 4 cut(s) 72, 101, 138, 168
BisI GCNGC 2 cut(s) 32, 35
BlsI GCNGC 2 cut(s) 33, 36
Bme1390I CCNGG 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 186
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BpuMI CCSGG 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 191
Bse1I ACTGG 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 158, 191
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 18, 21
BshFI GGCC 1 cut(s) 246
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 158, 191
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 1 cut(s) 246
Bso31I GGTCTC 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 161, 197
BspACI CCGC 2 cut(s) 18, 233
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 163
BspPI GGATC 3 cut(s) 156, 169, 205
BspTNI GGTCTC 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 55
BsrI ACTGG 1 cut(s) 163
BssMI GATC 2 cut(s) 161, 197
Bst4CI ACNGT 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 1 cut(s) 291
BstKTI GATC 2 cut(s) 164, 200
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 2 cut(s) 161, 197
BstMWI GCNNNNNNNGC 2 cut(s) 106, 247
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 18, 21
BstX2I RGATCY 1 cut(s) 161
BstYI RGATCY 1 cut(s) 161
BsuRI GGCC 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 248
Csp6I GTAC 3 cut(s) 56, 80, 189
CviAII CATG 3 cut(s) 53, 242, 263
CviJI RGCY 8 cut(s) 7, 26, 71, 123, 246, 250, 290, 305
CviKI_1 RGCY 8 cut(s) 7, 26, 71, 123, 246, 250, 290, 305
CviQI GTAC 3 cut(s) 56, 80, 189
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 163, 199
DpnII GATC 2 cut(s) 161, 197
EaeI YGGCCR 1 cut(s) 244
Eco31I GGTCTC 1 cut(s) 140
FaeI CATG 3 cut(s) 56, 245, 266
FaiI YATR 4 cut(s) 54, 182, 243, 264
FaqI GGGAC 1 cut(s) 115
FatI CATG 3 cut(s) 52, 241, 262
FauI CCCGC 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 32, 35
Fsp4HI GCNGC 2 cut(s) 32, 35
FspBI CTAG 4 cut(s) 72, 101, 138, 168
GluI GCNGC 2 cut(s) 32, 35
HaeIII GGCC 1 cut(s) 246
HapII CCGG 1 cut(s) 186
Hin1II CATG 3 cut(s) 56, 245, 266
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 216, 315
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 247
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 3 cut(s) 56, 245, 266
Kzo9I GATC 2 cut(s) 161, 197
LpnPI CCDG 4 cut(s) 144, 177, 199, 260
Lsp1109I GCAGC 2 cut(s) 18, 21
MaeI CTAG 4 cut(s) 72, 101, 138, 168
MalI GATC 2 cut(s) 163, 199
MboI GATC 2 cut(s) 161, 197
MboII GAAGA 1 cut(s) 235
MflI RGATCY 1 cut(s) 161
MlsI TGGCCA 1 cut(s) 246
MluNI TGGCCA 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 9 cut(s) 134, 162, 175, 188, 219, 222, 230, 261, 288
Mox20I TGGCCA 1 cut(s) 246
MscI TGGCCA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 261
Msp20I TGGCCA 1 cut(s) 246
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 186
Mva1269I GAATGC 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 106, 247
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 161, 197
NlaIII CATG 3 cut(s) 56, 245, 266
NlaIV GGNNCC 1 cut(s) 163
NspI RCATGY 1 cut(s) 56
PciI ACATGT 1 cut(s) 52
PctI GAATGC 1 cut(s) 102
PkrI GCNGC 2 cut(s) 33, 36
PscI ACATGT 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 161
RsaI GTAC 3 cut(s) 57, 81, 190
RsaNI GTAC 3 cut(s) 56, 80, 189
RseI CAYNNNNRTG 1 cut(s) 261
SatI GCNGC 2 cut(s) 32, 35
Sau3AI GATC 2 cut(s) 161, 197
ScrFI CCNGG 1 cut(s) 186
SetI ASST 4 cut(s) 73, 125, 145, 179
SmiMI CAYNNNNRTG 1 cut(s) 261
SsiI CCGC 2 cut(s) 18, 233
SspI AATATT 1 cut(s) 320
SspMI CTAG 4 cut(s) 72, 101, 138, 168
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 200
TatI WGTACW 1 cut(s) 55
TseI GCWGC 2 cut(s) 31, 34
XceI RCATGY 1 cut(s) 56
XspI CTAG 4 cut(s) 72, 101, 138, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.