Rmu_sc0016732.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016732.1
OG0017175
Physical Location & Seq
Reverse (-)
26856 .. 28462
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016732.1_g000006.1.cds

Sequence Viewer

Length: 690 bp
atggttgctggagggggtaacgcgttggctggtttgttgtcaccagaacatgcggaggctagggcgtgtagtttggctgctcaatttgtggctgaacatgattttttttttccagctatctcggagactgattctcagattgggcatggtcatttgattaccagggatgggcgtaacacctcaaccttggggcatatttatgatgatatgggtaccattctggatgctcactctaacttgaaggttactcacacaaggaggcctgcaaacacagtagctcatctcatggcagcatactctagttctttaactgaagaaacattttacttttcagctccttcctttctacttactgcattggcagctgatctaatggggcttgtcaatactgctttggctgtgctgctgcttctgtgcattctacatgtacaacccaacagagctagtagggtaccctataatgatggaatgctaatgaagcgagaactgataagcttacagtctcttcctagaggtgagaccccaccaactggatcctctcaatgcacctacatacccggtacaggcggatctggttgccctctcaaagtgaagaactatgcaggaggacatggccggcctcatcatcatgcttctgcttatcctcgtttaatggctccatttggtatggctaccaatcagaaatattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

24.47

Weight (kDa)

7.23

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23123
fragaria_vesca FvH4_4g02960
prunus_persica Prupe.1G033100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0391021
rosa_laevigata RLG00000009905
rosa_multiflora Rmu_sc0001824.1_g000025 Rmu_sc0016732.1_g000006
rosa_roxburghii Rroxscaffold_5G00336850
rosa_rugosa Rorug03G0332700
rosa_samantha Rh4AG034200 Rh4BG028900 Rh4CG037600 Rh4DG031600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 212, 451
AccB1I GGYRCC 2 cut(s) 212, 451
AccB7I CCANNNNNTGG 1 cut(s) 530
AccII CGCG 1 cut(s) 23
AciI CCGC 2 cut(s) 53, 567
AclWI GGATC 3 cut(s) 528, 541, 577
AcoI YGGCCR 1 cut(s) 613
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 4 cut(s) 214, 429, 453, 562
AfiI CCNNNNNNNGG 3 cut(s) 168, 530, 563
AflIII ACRYGT 2 cut(s) 21, 424
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 1 cut(s) 161
AluBI AGCT 6 cut(s) 116, 278, 335, 365, 443, 495
AluI AGCT 6 cut(s) 116, 278, 335, 365, 443, 495
Alw26I GTCTC 3 cut(s) 119, 507, 512
AlwI GGATC 3 cut(s) 528, 541, 577
AoxI GGCC 3 cut(s) 260, 613, 617
ApeKI GCWGC 5 cut(s) 77, 290, 362, 403, 406
Asp718I GGTACC 2 cut(s) 212, 451
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 2 cut(s) 33, 527
BamHI GGATCC 1 cut(s) 533
BanI GGYRCC 2 cut(s) 212, 451
BbvI GCAGC 5 cut(s) 64, 302, 374, 390, 393
BccI CCATC 2 cut(s) 161, 458
BciT130I CCWGG 1 cut(s) 163
BcnI CCSGG 1 cut(s) 558
BcoDI GTCTC 3 cut(s) 119, 507, 512
BfaI CTAG 4 cut(s) 60, 300, 444, 510
BisI GCNGC 5 cut(s) 78, 291, 363, 404, 407
BlsI GCNGC 5 cut(s) 79, 292, 364, 405, 408
Bme1390I CCNGG 2 cut(s) 163, 558
BmiI GGNNCC 4 cut(s) 214, 453, 535, 657
BmrFI CCNGG 2 cut(s) 163, 558
BmsI GCATC 1 cut(s) 214
BpmI CTGGAG 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 2 cut(s) 162, 186
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 530, 563
Bse118I RCCGGY 1 cut(s) 615
Bse1I ACTGG 1 cut(s) 535
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 162, 186
BseGI GGATG 2 cut(s) 172, 229
BseLI CCNNNNNNNGG 3 cut(s) 168, 530, 563
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 535
BseXI GCAGC 5 cut(s) 64, 302, 374, 390, 393
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 3 cut(s) 262, 615, 619
BshNI GGYRCC 2 cut(s) 212, 451
BsiSI CCGG 2 cut(s) 558, 616
BslI CCNNNNNNNGG 3 cut(s) 168, 530, 563
BsmAI GTCTC 3 cut(s) 119, 507, 512
BsmI GAATGC 2 cut(s) 417, 474
BsnI GGCC 3 cut(s) 262, 615, 619
Bso31I GGTCTC 1 cut(s) 512
Bsp1407I TGTACA 1 cut(s) 427
Bsp143I GATC 3 cut(s) 367, 533, 569
BspACI CCGC 2 cut(s) 53, 567
BspANI GGCC 3 cut(s) 262, 615, 619
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 4 cut(s) 214, 453, 535, 657
BspPI GGATC 3 cut(s) 528, 541, 577
BspT107I GGYRCC 2 cut(s) 212, 451
BspTNI GGTCTC 1 cut(s) 512
BsrFI RCCGGY 1 cut(s) 615
BsrGI TGTACA 1 cut(s) 427
BsrI ACTGG 1 cut(s) 535
BssAI RCCGGY 1 cut(s) 615
BssECI CCNNGG 2 cut(s) 162, 186
BssMI GATC 3 cut(s) 367, 533, 569
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 2 cut(s) 274, 501
Bst6I CTCTTC 1 cut(s) 510
BstAUI TGTACA 1 cut(s) 427
BstC8I GCNNGC 2 cut(s) 264, 617
BstDEI CTNAG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 172, 229
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 3 cut(s) 370, 536, 572
BstMAI GTCTC 3 cut(s) 119, 507, 512
BstMBI GATC 3 cut(s) 367, 533, 569
BstMWI GCNNNNNNNGC 2 cut(s) 362, 478
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 2 cut(s) 53, 428
BstSCI CCNGG 2 cut(s) 161, 556
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 5 cut(s) 64, 302, 374, 390, 393
BstX2I RGATCY 2 cut(s) 533, 569
BstYI RGATCY 2 cut(s) 533, 569
BsuRI GGCC 3 cut(s) 262, 615, 619
BtsCI GGATG 2 cut(s) 172, 229
Cac8I GCNNGC 2 cut(s) 264, 617
Cfr10I RCCGGY 1 cut(s) 615
Csp6I GTAC 4 cut(s) 213, 428, 452, 561
CviAII CATG 7 cut(s) 50, 98, 146, 286, 425, 611, 629
CviQI GTAC 4 cut(s) 213, 428, 452, 561
DdeI CTNAG 1 cut(s) 135
DpnI GATC 3 cut(s) 369, 535, 571
DpnII GATC 3 cut(s) 367, 533, 569
EaeI YGGCCR 1 cut(s) 613
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
EciI GGCGGA 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 186
Eco147I AGGCCT 1 cut(s) 262
Eco31I GGTCTC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 333
EcoRII CCWGG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 7 cut(s) 53, 101, 149, 289, 428, 614, 632
FatI CATG 7 cut(s) 49, 97, 145, 285, 424, 610, 628
Fnu4HI GCNGC 5 cut(s) 78, 291, 363, 404, 407
FokI GGATG 2 cut(s) 179, 236
FseI GGCCGGCC 1 cut(s) 619
Fsp4HI GCNGC 5 cut(s) 78, 291, 363, 404, 407
FspBI CTAG 4 cut(s) 60, 300, 444, 510
GluI GCNGC 5 cut(s) 78, 291, 363, 404, 407
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 3 cut(s) 262, 615, 619
HapII CCGG 2 cut(s) 558, 616
Hin1II CATG 7 cut(s) 53, 101, 149, 289, 428, 614, 632
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 1 cut(s) 131
HpaII CCGG 2 cut(s) 558, 616
HphI GGTGA 2 cut(s) 33, 527
Hpy188I TCNGA 3 cut(s) 124, 138, 681
Hpy188III TCNNGA 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 235, 348
HpyCH4III ACNGT 2 cut(s) 274, 501
HpyCH4V TGCA 5 cut(s) 266, 356, 417, 546, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 478
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 7 cut(s) 53, 101, 149, 289, 428, 614, 632
KpnI GGTACC 2 cut(s) 216, 455
KroI GCCGGC 1 cut(s) 615
KroNI GCCGGC 1 cut(s) 617
Kzo9I GATC 3 cut(s) 367, 533, 569
LmnI GCTCC 2 cut(s) 340, 661
Lsp1109I GCAGC 5 cut(s) 64, 302, 374, 390, 393
LweI GCATC 1 cut(s) 214
MaeI CTAG 4 cut(s) 60, 300, 444, 510
MaeIII GTNAC 4 cut(s) 17, 39, 173, 244
MalI GATC 3 cut(s) 369, 535, 571
MboI GATC 3 cut(s) 367, 533, 569
MboII GAAGA 3 cut(s) 326, 497, 604
MflI RGATCY 2 cut(s) 533, 569
MluCI AATT 1 cut(s) 83
MluI ACGCGT 1 cut(s) 21
MroNI GCCGGC 1 cut(s) 615
MseI TTAA 2 cut(s) 308, 650
MslI CAYNNNNRTG 2 cut(s) 198, 627
MspA1I CMGCKG 1 cut(s) 365
MspI CCGG 2 cut(s) 558, 616
MspR9I CCNGG 2 cut(s) 163, 558
Mva1269I GAATGC 2 cut(s) 417, 474
MvaI CCWGG 1 cut(s) 163
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 362, 478
NaeI GCCGGC 1 cut(s) 617
NciI CCSGG 1 cut(s) 558
NdeII GATC 3 cut(s) 367, 533, 569
NgoMIV GCCGGC 1 cut(s) 615
NlaIII CATG 7 cut(s) 53, 101, 149, 289, 428, 614, 632
NlaIV GGNNCC 4 cut(s) 214, 453, 535, 657
NmuCI GTSAC 1 cut(s) 39
NspI RCATGY 2 cut(s) 53, 428
PceI AGGCCT 1 cut(s) 262
PciI ACATGT 1 cut(s) 424
PctI GAATGC 2 cut(s) 417, 474
PdiI GCCGGC 1 cut(s) 617
PfeI GAWTC 1 cut(s) 131
PflMI CCANNNNNTGG 1 cut(s) 530
PkrI GCNGC 5 cut(s) 79, 292, 364, 405, 408
PscI ACATGT 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 4 cut(s) 214, 453, 535, 657
PsuI RGATCY 2 cut(s) 533, 569
PvuII CAGCTG 1 cut(s) 365
RigI GGCCGGCC 1 cut(s) 619
RsaI GTAC 4 cut(s) 214, 429, 453, 562
RsaNI GTAC 4 cut(s) 213, 428, 452, 561
RseI CAYNNNNRTG 2 cut(s) 198, 627
SaqAI TTAA 2 cut(s) 308, 650
SatI GCNGC 5 cut(s) 78, 291, 363, 404, 407
Sau3AI GATC 3 cut(s) 367, 533, 569
ScrFI CCNGG 2 cut(s) 163, 558
SfaNI GCATC 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 198, 627
Sse9I AATT 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 262
SsiI CCGC 2 cut(s) 53, 567
SspI AATATT 1 cut(s) 686
SspMI CTAG 4 cut(s) 60, 300, 444, 510
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 2 cut(s) 161, 556
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 2 cut(s) 274, 501
TasI AATT 1 cut(s) 83
TatI WGTACW 1 cut(s) 427
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 2 cut(s) 308, 650
Tru9I TTAA 2 cut(s) 308, 650
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 5 cut(s) 77, 290, 362, 403, 406
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 491
Van91I CCANNNNNTGG 1 cut(s) 530
XceI RCATGY 2 cut(s) 53, 428
XspI CTAG 4 cut(s) 60, 300, 444, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.