Prupe.1G033100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017175
Physical Location & Seq
Reverse (-)
2299722 .. 2300027
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G033100.1

Sequence Viewer

Length: 306 bp
ATGGGGCTTGTCCACTTTGCTTTGGCTGCGCTGCTGCTTCTGTGTCTTCTGCATGTACAACCCAAGGCTGGCAGAATTCTCTATGCTGAAGCGAGGCTTATGAAGCATGAACTCATGAACTTCCAGTCTCTTCCGAGAGGTGATCTGCCTCCTTCCGAGTCCTCCAAGTGCACCTACATCCCCGGCACTGGCGGATCGGGCTGCCCACTCAAGGTCAAGAACTACGCAGGCCATGGCTTGTCTCACCATGCTTCTGCTTACCCCCGTCTCATGGTTCCATTTGGTGTGGCTACCAACCATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.9

Weight (kDa)

9.56

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23123
fragaria_vesca FvH4_4g02960
prunus_persica Prupe.1G033100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0391021
rosa_laevigata RLG00000009905
rosa_multiflora Rmu_sc0001824.1_g000025 Rmu_sc0016732.1_g000006
rosa_roxburghii Rroxscaffold_5G00336850
rosa_rugosa Rorug03G0332700
rosa_samantha Rh4AG034200 Rh4BG028900 Rh4CG037600 Rh4DG031600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 108
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 4 cut(s) 68, 188, 211, 271
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 3 cut(s) 132, 246, 272
Alw44I GTGCAC 1 cut(s) 169
AlwI GGATC 1 cut(s) 202
AoxI GGCC 1 cut(s) 229
ApaLI GTGCAC 1 cut(s) 169
ApeKI GCWGC 4 cut(s) 26, 31, 34, 201
ApoI RAATTY 1 cut(s) 75
AspLEI GCGC 1 cut(s) 31
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 152, 236
BaeGI GKGCMC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 4 cut(s) 13, 18, 21, 188
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 3 cut(s) 132, 246, 272
BisI GCNGC 4 cut(s) 27, 32, 35, 202
BlsI GCNGC 4 cut(s) 28, 33, 36, 203
Bme1390I CCNGG 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 63, 181, 232
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 188, 211, 271
Bse1I ACTGG 2 cut(s) 124, 193
BseDI CCNNGG 3 cut(s) 63, 181, 232
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 4 cut(s) 68, 188, 211, 271
BseNI ACTGG 2 cut(s) 124, 193
BseSI GKGCMC 1 cut(s) 173
BseXI GCAGC 4 cut(s) 13, 18, 21, 188
BshFI GGCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 4 cut(s) 68, 188, 211, 271
BsmAI GTCTC 3 cut(s) 132, 246, 272
BsmBI CGTCTC 1 cut(s) 272
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 173
Bsp1407I TGTACA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 142, 194
Bsp19I CCATGG 1 cut(s) 232
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 231
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 276
BspPI GGATC 1 cut(s) 202
BsrGI TGTACA 1 cut(s) 55
BsrI ACTGG 2 cut(s) 124, 193
BssECI CCNNGG 3 cut(s) 63, 181, 232
BssMI GATC 2 cut(s) 142, 194
BssT1I CCWWGG 2 cut(s) 63, 232
Bst6I CTCTTC 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 55
BstC8I GCNNGC 2 cut(s) 70, 229
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 2 cut(s) 145, 197
BstMAI GTCTC 3 cut(s) 132, 246, 272
BstMBI GATC 2 cut(s) 142, 194
BstMWI GCNNNNNNNGC 3 cut(s) 26, 103, 198
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 173
BstV1I GCAGC 4 cut(s) 13, 18, 21, 188
BstV2I GAAGAC 1 cut(s) 38
BsuRI GGCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 232
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 70, 229
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 56
CviAII CATG 6 cut(s) 53, 107, 115, 233, 248, 271
CviJI RGCY 8 cut(s) 7, 26, 68, 97, 201, 231, 237, 290
CviKI_1 RGCY 8 cut(s) 7, 26, 68, 97, 201, 231, 237, 290
CviQI GTAC 1 cut(s) 56
DpnI GATC 2 cut(s) 144, 196
DpnII GATC 2 cut(s) 142, 194
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
EciI GGCGGA 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 63, 232
Eco57I CTGAAG 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 75
EcoT14I CCWWGG 2 cut(s) 63, 232
ErhI CCWWGG 2 cut(s) 63, 232
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 6 cut(s) 56, 110, 118, 236, 251, 274
FaiI YATR 9 cut(s) 54, 84, 101, 108, 116, 234, 249, 272, 300
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 6 cut(s) 52, 106, 114, 232, 247, 270
Fnu4HI GCNGC 4 cut(s) 27, 32, 35, 202
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 4 cut(s) 27, 32, 35, 202
GlaI GCGC 1 cut(s) 30
GluI GCNGC 4 cut(s) 27, 32, 35, 202
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 183
HhaI GCGC 1 cut(s) 31
Hin1II CATG 6 cut(s) 56, 110, 118, 236, 251, 274
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HinfI GANTC 1 cut(s) 158
HpaII CCGG 1 cut(s) 183
HphI GGTGA 2 cut(s) 152, 236
Hpy166II GTNNAC 2 cut(s) 13, 171
Hpy188I TCNGA 2 cut(s) 135, 157
Hpy188III TCNNGA 2 cut(s) 115, 217
Hpy8I GTNNAC 2 cut(s) 13, 171
HpyAV CCTTC 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 52, 171
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 103, 198
Hsp92II CATG 6 cut(s) 56, 110, 118, 236, 251, 274
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 2 cut(s) 142, 194
LpnPI CCDG 5 cut(s) 54, 137, 174, 196, 213
Lsp1109I GCAGC 4 cut(s) 13, 18, 21, 188
MalI GATC 2 cut(s) 144, 196
MboI GATC 2 cut(s) 142, 194
MboII GAAGA 2 cut(s) 38, 122
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 1 cut(s) 75
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 4 cut(s) 87, 131, 159, 172
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 183
MwoI GCNNNNNNNGC 3 cut(s) 26, 103, 198
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 232
NdeII GATC 2 cut(s) 142, 194
NlaIII CATG 6 cut(s) 56, 110, 118, 236, 251, 274
NlaIV GGNNCC 1 cut(s) 276
NspI RCATGY 1 cut(s) 56
PagI TCATGA 1 cut(s) 114
PkrI GCNGC 4 cut(s) 28, 33, 36, 203
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 276
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SatI GCNGC 4 cut(s) 27, 32, 35, 202
Sau3AI GATC 2 cut(s) 142, 194
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 173
SetI ASST 3 cut(s) 142, 176, 216
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 75
SsiI CCGC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 2 cut(s) 63, 232
TasI AATT 1 cut(s) 75
TatI WGTACW 1 cut(s) 55
TscAI CASTG 1 cut(s) 193
TseI GCWGC 4 cut(s) 26, 31, 34, 201
TspDTI ATGAA 3 cut(s) 116, 123, 131
TspRI CASTG 1 cut(s) 193
VneI GTGCAC 1 cut(s) 169
XapI RAATTY 1 cut(s) 75
XceI RCATGY 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.