Rroxscaffold_5G00336850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017175
Physical Location & Seq
Reverse (-)
4716338 .. 4717929
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336850.1

Sequence Viewer

Length: 561 bp
ATGGTTGCTGGAGGGGGTAAGGCGTTGGCTGGTTTGTTGTCACCAGAACATGTGGAGGCTAGGGCGTGTAGTTTGGCTGCTCAATTTGTGGTTGAACATGATTTTTTTCCAGATATCTTGGAGACTGATTCTCAGATTGGGCACAGTCATTTGATTACTAGGGATGGGGGTAACACCTCAACCTTGGGGCGTATTTATGATGATATGGGTAACATTCTGGATGCTCACTCTAACTTGAAGCTAATGGGGCTTGTCAATACTGCTTTGGCTGTGCTGCTGCTTCTGTGCGTTCTACATGTACAACACAACAGAGCTAGTAGGGTACTCTATAATGATGGAATGCTAATGAAGCGAGAACTTATAAGCTTACAGTCTCTTCCTAGAGGTGAGACCCCACCAACTGGATCCTCTGAATGCACCTACATACCCGGTACAGGCGGGTCGGGTTGCCCTCTCAAAGTGAAGAACTATGCAGGAGGACATGGCCGGCCTCATCATCATGCTTCTGCTTATCCTCGTTTAATGGCTCCATTTGGTGTGGCTACCAATCAGAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

19.89

Weight (kDa)

7.18

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23123
fragaria_vesca FvH4_4g02960
prunus_persica Prupe.1G033100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0391021
rosa_laevigata RLG00000009905
rosa_multiflora Rmu_sc0001824.1_g000025 Rmu_sc0016732.1_g000006
rosa_roxburghii Rroxscaffold_5G00336850
rosa_rugosa Rorug03G0332700
rosa_samantha Rh4AG034200 Rh4BG028900 Rh4CG037600 Rh4DG031600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 401
AciI CCGC 1 cut(s) 438
AclWI GGATC 2 cut(s) 399, 412
AcoI YGGCCR 1 cut(s) 484
AfaI GTAC 3 cut(s) 300, 324, 433
AfiI CCNNNNNNNGG 2 cut(s) 401, 434
AflIII ACRYGT 2 cut(s) 49, 295
AgsI TTSAA 2 cut(s) 95, 238
AluBI AGCT 3 cut(s) 241, 314, 366
AluI AGCT 3 cut(s) 241, 314, 366
Alw26I GTCTC 3 cut(s) 116, 378, 383
AlwI GGATC 2 cut(s) 399, 412
AoxI GGCC 2 cut(s) 484, 488
ApeKI GCWGC 3 cut(s) 77, 274, 277
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 2 cut(s) 33, 398
BaeGI GKGCMC 1 cut(s) 144
BamHI GGATCC 1 cut(s) 404
BbvI GCAGC 3 cut(s) 64, 261, 264
BccI CCATC 2 cut(s) 158, 329
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 3 cut(s) 116, 378, 383
BfaI CTAG 4 cut(s) 60, 159, 315, 381
BisI GCNGC 3 cut(s) 78, 275, 278
BlsI GCNGC 3 cut(s) 79, 276, 279
Bme1390I CCNGG 1 cut(s) 429
BmiI GGNNCC 2 cut(s) 406, 528
BmrFI CCNGG 1 cut(s) 429
BmsI GCATC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 429
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 434
Bse118I RCCGGY 1 cut(s) 486
Bse1I ACTGG 1 cut(s) 406
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 169, 226
BseLI CCNNNNNNNGG 2 cut(s) 401, 434
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 406
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 3 cut(s) 64, 261, 264
BshFI GGCC 2 cut(s) 486, 490
BsiSI CCGG 2 cut(s) 429, 487
BslI CCNNNNNNNGG 2 cut(s) 401, 434
BsmAI GTCTC 3 cut(s) 116, 378, 383
BsmI GAATGC 2 cut(s) 345, 419
BsnI GGCC 2 cut(s) 486, 490
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 298
Bsp143I GATC 1 cut(s) 404
BspACI CCGC 1 cut(s) 438
BspANI GGCC 2 cut(s) 486, 490
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 406, 528
BspPI GGATC 2 cut(s) 399, 412
BspTNI GGTCTC 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 486
BsrGI TGTACA 1 cut(s) 298
BsrI ACTGG 1 cut(s) 406
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 404
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 146, 372
Bst6I CTCTTC 1 cut(s) 381
BstAUI TGTACA 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 1 cut(s) 132
BstF5I GGATG 2 cut(s) 169, 226
BstKTI GATC 1 cut(s) 407
BstMAI GTCTC 3 cut(s) 116, 378, 383
BstMBI GATC 1 cut(s) 404
BstMWI GCNNNNNNNGC 2 cut(s) 247, 349
BstNSI RCATGY 2 cut(s) 53, 299
BstSCI CCNGG 1 cut(s) 427
BstSLI GKGCMC 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 64, 261, 264
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 2 cut(s) 486, 490
BtsCI GGATG 2 cut(s) 169, 226
Cac8I GCNNGC 1 cut(s) 488
Cfr10I RCCGGY 1 cut(s) 486
Csp6I GTAC 3 cut(s) 299, 323, 432
CviAII CATG 5 cut(s) 50, 98, 296, 482, 500
CviQI GTAC 3 cut(s) 299, 323, 432
DdeI CTNAG 1 cut(s) 132
DpnI GATC 1 cut(s) 406
DpnII GATC 1 cut(s) 404
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 383
Eco32I GATATC 1 cut(s) 115
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 5 cut(s) 53, 101, 299, 485, 503
FatI CATG 5 cut(s) 49, 97, 295, 481, 499
FauI CCCGC 1 cut(s) 431
Fnu4HI GCNGC 3 cut(s) 78, 275, 278
FokI GGATG 2 cut(s) 176, 233
FseI GGCCGGCC 1 cut(s) 490
Fsp4HI GCNGC 3 cut(s) 78, 275, 278
FspBI CTAG 4 cut(s) 60, 159, 315, 381
GluI GCNGC 3 cut(s) 78, 275, 278
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 2 cut(s) 486, 490
HapII CCGG 2 cut(s) 429, 487
Hin1II CATG 5 cut(s) 53, 101, 299, 485, 503
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 1 cut(s) 128
HpaII CCGG 2 cut(s) 429, 487
HphI GGTGA 2 cut(s) 33, 398
Hpy188I TCNGA 3 cut(s) 135, 412, 552
Hpy188III TCNNGA 2 cut(s) 110, 218
HpyCH4III ACNGT 2 cut(s) 146, 372
HpyCH4V TGCA 2 cut(s) 417, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 349
HpyF3I CTNAG 1 cut(s) 132
Hsp92II CATG 5 cut(s) 53, 101, 299, 485, 503
KroI GCCGGC 1 cut(s) 486
KroNI GCCGGC 1 cut(s) 488
Kzo9I GATC 1 cut(s) 404
LmnI GCTCC 1 cut(s) 532
LpnPI CCDG 9 cut(s) 15, 57, 123, 203, 387, 420, 442, 459, 500
Lsp1109I GCAGC 3 cut(s) 64, 261, 264
LweI GCATC 1 cut(s) 211
MaeI CTAG 4 cut(s) 60, 159, 315, 381
MaeIII GTNAC 3 cut(s) 39, 170, 209
MalI GATC 1 cut(s) 406
MboI GATC 1 cut(s) 404
MboII GAAGA 2 cut(s) 368, 475
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 1 cut(s) 83
MnlI CCTC 9 cut(s) 5, 49, 187, 377, 418, 462, 470, 501, 525
MroNI GCCGGC 1 cut(s) 486
MseI TTAA 1 cut(s) 521
MslI CAYNNNNRTG 1 cut(s) 498
MspI CCGG 2 cut(s) 429, 487
MspR9I CCNGG 1 cut(s) 429
Mva1269I GAATGC 2 cut(s) 345, 419
MwoI GCNNNNNNNGC 2 cut(s) 247, 349
NaeI GCCGGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 429
NdeII GATC 1 cut(s) 404
NgoMIV GCCGGC 1 cut(s) 486
NlaIII CATG 5 cut(s) 53, 101, 299, 485, 503
NlaIV GGNNCC 2 cut(s) 406, 528
NmuCI GTSAC 1 cut(s) 39
NspI RCATGY 2 cut(s) 53, 299
PciI ACATGT 2 cut(s) 49, 295
PctI GAATGC 2 cut(s) 345, 419
PdiI GCCGGC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 3 cut(s) 79, 276, 279
PscI ACATGT 2 cut(s) 49, 295
PsiI TTATAA 1 cut(s) 362
PspN4I GGNNCC 2 cut(s) 406, 528
PsuI RGATCY 1 cut(s) 404
RigI GGCCGGCC 1 cut(s) 490
RsaI GTAC 3 cut(s) 300, 324, 433
RsaNI GTAC 3 cut(s) 299, 323, 432
RseI CAYNNNNRTG 1 cut(s) 498
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 3 cut(s) 78, 275, 278
Sau3AI GATC 1 cut(s) 404
ScrFI CCNGG 1 cut(s) 429
SduI GDGCHC 1 cut(s) 144
SetI ASST 7 cut(s) 179, 185, 243, 316, 368, 388, 422
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 498
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 438
SspI AATATT 1 cut(s) 557
SspMI CTAG 4 cut(s) 60, 159, 315, 381
StyD4I CCNGG 1 cut(s) 427
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 146, 372
TasI AATT 1 cut(s) 83
TatI WGTACW 1 cut(s) 298
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 3 cut(s) 77, 274, 277
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 401
XceI RCATGY 2 cut(s) 53, 299
XspI CTAG 4 cut(s) 60, 159, 315, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.