Rh4AG034200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017175
Physical Location & Seq
Reverse (-)
7347072 .. 7347936
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG034200.1

Sequence Viewer

Length: 348 bp
ATGAAGTTATCATTCTTCCTATACAAAGCTATGGGGCTTGTCAATACTGCTTTGGCTGTGCTGCTGCTTCTGTGCATTCTACATGGACAACCCAACAGAGCTAGTAGGGTACTCTATGATGATGGAATGCTAATGAAGCGAGAACTGATAAGCTTACAGTCTCTTCCTAGAGGTGAGACCCCACCAACTGGATCCTCTCAATGCACCTACATACCCGGTACAGGCGGATCTGGTTGCCCTCTCAAAGTGAAGAACTATGCAGGAGGACATGGCCGGCCTCATCATCATGCTTCTGCTTATCCTCGTTTAATGGCTCGATTTGGTGTGGCTACCAATCAGAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.52

Weight (kDa)

9.9

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23123
fragaria_vesca FvH4_4g02960
prunus_persica Prupe.1G033100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0391021
rosa_laevigata RLG00000009905
rosa_multiflora Rmu_sc0001824.1_g000025 Rmu_sc0016732.1_g000006
rosa_roxburghii Rroxscaffold_5G00336850
rosa_rugosa Rorug03G0332700
rosa_samantha Rh4AG034200 Rh4BG028900 Rh4CG037600 Rh4DG031600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 188
AciI CCGC 1 cut(s) 225
AclWI GGATC 3 cut(s) 186, 199, 235
AcoI YGGCCR 1 cut(s) 271
AfaI GTAC 2 cut(s) 111, 220
AfiI CCNNNNNNNGG 2 cut(s) 188, 221
AluBI AGCT 3 cut(s) 29, 101, 153
AluI AGCT 3 cut(s) 29, 101, 153
Alw26I GTCTC 2 cut(s) 165, 170
AlwI GGATC 3 cut(s) 186, 199, 235
AoxI GGCC 2 cut(s) 271, 275
ApeKI GCWGC 2 cut(s) 61, 64
AsuC2I CCSGG 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 185
BamHI GGATCC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 48, 51
BccI CCATC 1 cut(s) 116
BcnI CCSGG 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 165, 170
BfaI CTAG 2 cut(s) 102, 168
BisI GCNGC 2 cut(s) 62, 65
BlsI GCNGC 2 cut(s) 63, 66
Bme1390I CCNGG 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 221
Bse118I RCCGGY 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 188, 221
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 2 cut(s) 48, 51
BshFI GGCC 2 cut(s) 273, 277
BsiSI CCGG 2 cut(s) 216, 274
BslI CCNNNNNNNGG 2 cut(s) 188, 221
BsmAI GTCTC 2 cut(s) 165, 170
BsmI GAATGC 2 cut(s) 75, 132
BsnI GGCC 2 cut(s) 273, 277
Bso31I GGTCTC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 191, 227
BspACI CCGC 1 cut(s) 225
BspANI GGCC 2 cut(s) 273, 277
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 3 cut(s) 186, 199, 235
BspTNI GGTCTC 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 273
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 273
BssMI GATC 2 cut(s) 191, 227
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 275
BstKTI GATC 2 cut(s) 194, 230
BstMAI GTCTC 2 cut(s) 165, 170
BstMBI GATC 2 cut(s) 191, 227
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 48, 51
BstX2I RGATCY 2 cut(s) 191, 227
BstYI RGATCY 2 cut(s) 191, 227
BsuRI GGCC 2 cut(s) 273, 277
Cac8I GCNNGC 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 273
Csp6I GTAC 2 cut(s) 110, 219
CviAII CATG 3 cut(s) 83, 269, 287
CviJI RGCY 9 cut(s) 29, 37, 56, 101, 153, 273, 277, 314, 329
CviKI_1 RGCY 9 cut(s) 29, 37, 56, 101, 153, 273, 277, 314, 329
CviQI GTAC 2 cut(s) 110, 219
DpnI GATC 2 cut(s) 193, 229
DpnII GATC 2 cut(s) 191, 227
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EciI GGCGGA 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 170
FaeI CATG 3 cut(s) 86, 272, 290
FaiI YATR 8 cut(s) 22, 32, 84, 117, 212, 258, 270, 288
FatI CATG 3 cut(s) 82, 268, 286
Fnu4HI GCNGC 2 cut(s) 62, 65
FseI GGCCGGCC 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 62, 65
FspBI CTAG 2 cut(s) 102, 168
GluI GCNGC 2 cut(s) 62, 65
HaeIII GGCC 2 cut(s) 273, 277
HapII CCGG 2 cut(s) 216, 274
Hin1II CATG 3 cut(s) 86, 272, 290
HindIII AAGCTT 1 cut(s) 151
HpaII CCGG 2 cut(s) 216, 274
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 339
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4V TGCA 3 cut(s) 75, 204, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
Hsp92II CATG 3 cut(s) 86, 272, 290
KroI GCCGGC 1 cut(s) 273
KroNI GCCGGC 1 cut(s) 275
Kzo9I GATC 2 cut(s) 191, 227
LpnPI CCDG 6 cut(s) 174, 207, 216, 229, 246, 287
Lsp1109I GCAGC 2 cut(s) 48, 51
MaeI CTAG 2 cut(s) 102, 168
MalI GATC 2 cut(s) 193, 229
MboI GATC 2 cut(s) 191, 227
MboII GAAGA 3 cut(s) 7, 155, 262
MflI RGATCY 2 cut(s) 191, 227
MnlI CCTC 6 cut(s) 164, 205, 249, 257, 288, 312
MroNI GCCGGC 1 cut(s) 273
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 1 cut(s) 285
MspI CCGG 2 cut(s) 216, 274
MspR9I CCNGG 1 cut(s) 216
Mva1269I GAATGC 2 cut(s) 75, 132
MwoI GCNNNNNNNGC 1 cut(s) 136
NaeI GCCGGC 1 cut(s) 275
NciI CCSGG 1 cut(s) 216
NdeII GATC 2 cut(s) 191, 227
NgoMIV GCCGGC 1 cut(s) 273
NlaIII CATG 3 cut(s) 86, 272, 290
NlaIV GGNNCC 1 cut(s) 193
PctI GAATGC 2 cut(s) 75, 132
PdiI GCCGGC 1 cut(s) 275
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 2 cut(s) 63, 66
PspN4I GGNNCC 1 cut(s) 193
PsuI RGATCY 2 cut(s) 191, 227
RigI GGCCGGCC 1 cut(s) 277
RsaI GTAC 2 cut(s) 111, 220
RsaNI GTAC 2 cut(s) 110, 219
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 2 cut(s) 62, 65
Sau3AI GATC 2 cut(s) 191, 227
ScrFI CCNGG 1 cut(s) 216
SetI ASST 5 cut(s) 31, 103, 155, 175, 209
SmiMI CAYNNNNRTG 1 cut(s) 285
SsiI CCGC 1 cut(s) 225
SspI AATATT 1 cut(s) 344
SspMI CTAG 2 cut(s) 102, 168
StyD4I CCNGG 1 cut(s) 214
TaaI ACNGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 316
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TseI GCWGC 2 cut(s) 61, 64
TspDTI ATGAA 2 cut(s) 17, 149
Van91I CCANNNNNTGG 1 cut(s) 188
XspI CTAG 2 cut(s) 102, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.