Rh4BG028900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017175
Physical Location & Seq
Reverse (-)
5112040 .. 5113045
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG028900.1

Sequence Viewer

Length: 318 bp
ATGGGGCTTGTCAATACTGCTTTGGCTGTGCTGCTGCTTCTGTGCATTCTACATGTACAACCCAACAGAGCTAGTAGAGTACTCTATAATGATGGAATGCTAATGAAGCGAGAACTGATAAGCTTACAGTCTCTTCCTAGAGGTGAGACCCCACCAACTGGATCCTCTCAATGCACCTACATACCCGGTACAGGCGGATCTGGTTGCCCTCTCAAAGTGAAGAACTATGCAGGAGGACATGGCCGGCCTCATCATCATGCTTCTGCTTATCCTCGTTTAATGGCTCCATTTGGTGTGGCTACCAATCAGAAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.27

Weight (kDa)

9.78

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23123
fragaria_vesca FvH4_4g02960
prunus_persica Prupe.1G033100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0391021
rosa_laevigata RLG00000009905
rosa_multiflora Rmu_sc0001824.1_g000025 Rmu_sc0016732.1_g000006
rosa_roxburghii Rroxscaffold_5G00336850
rosa_rugosa Rorug03G0332700
rosa_samantha Rh4AG034200 Rh4BG028900 Rh4CG037600 Rh4DG031600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 158
AciI CCGC 1 cut(s) 195
AclWI GGATC 3 cut(s) 156, 169, 205
AcoI YGGCCR 1 cut(s) 241
AfaI GTAC 3 cut(s) 57, 81, 190
AfiI CCNNNNNNNGG 2 cut(s) 158, 191
AflIII ACRYGT 1 cut(s) 52
AluBI AGCT 2 cut(s) 71, 123
AluI AGCT 2 cut(s) 71, 123
Alw26I GTCTC 2 cut(s) 135, 140
AlwI GGATC 3 cut(s) 156, 169, 205
AoxI GGCC 2 cut(s) 241, 245
ApeKI GCWGC 2 cut(s) 31, 34
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 155
BamHI GGATCC 1 cut(s) 161
BbvI GCAGC 2 cut(s) 18, 21
BccI CCATC 1 cut(s) 86
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 135, 140
BfaI CTAG 2 cut(s) 72, 138
BisI GCNGC 2 cut(s) 32, 35
BlsI GCNGC 2 cut(s) 33, 36
BmcAI AGTACT 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 163, 285
BmrFI CCNGG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 191
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 158, 191
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 2 cut(s) 18, 21
BshFI GGCC 2 cut(s) 243, 247
BsiSI CCGG 2 cut(s) 186, 244
BslI CCNNNNNNNGG 2 cut(s) 158, 191
BsmAI GTCTC 2 cut(s) 135, 140
BsmI GAATGC 2 cut(s) 45, 102
BsnI GGCC 2 cut(s) 243, 247
Bso31I GGTCTC 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 55
Bsp143I GATC 2 cut(s) 161, 197
BspACI CCGC 1 cut(s) 195
BspANI GGCC 2 cut(s) 243, 247
BspLI GGNNCC 2 cut(s) 163, 285
BspPI GGATC 3 cut(s) 156, 169, 205
BspTNI GGTCTC 1 cut(s) 140
BsrFI RCCGGY 1 cut(s) 243
BsrGI TGTACA 1 cut(s) 55
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 243
BssMI GATC 2 cut(s) 161, 197
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 138
BstAUI TGTACA 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 164, 200
BstMAI GTCTC 2 cut(s) 135, 140
BstMBI GATC 2 cut(s) 161, 197
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 18, 21
BstX2I RGATCY 2 cut(s) 161, 197
BstYI RGATCY 2 cut(s) 161, 197
BsuRI GGCC 2 cut(s) 243, 247
Cac8I GCNNGC 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 243
Csp6I GTAC 3 cut(s) 56, 80, 189
CviAII CATG 3 cut(s) 53, 239, 257
CviJI RGCY 8 cut(s) 7, 26, 71, 123, 243, 247, 284, 299
CviKI_1 RGCY 8 cut(s) 7, 26, 71, 123, 243, 247, 284, 299
CviQI GTAC 3 cut(s) 56, 80, 189
DpnI GATC 2 cut(s) 163, 199
DpnII GATC 2 cut(s) 161, 197
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 140
FaeI CATG 3 cut(s) 56, 242, 260
FaiI YATR 6 cut(s) 54, 87, 182, 228, 240, 258
FatI CATG 3 cut(s) 52, 238, 256
Fnu4HI GCNGC 2 cut(s) 32, 35
FseI GGCCGGCC 1 cut(s) 247
Fsp4HI GCNGC 2 cut(s) 32, 35
FspBI CTAG 2 cut(s) 72, 138
GluI GCNGC 2 cut(s) 32, 35
HaeIII GGCC 2 cut(s) 243, 247
HapII CCGG 2 cut(s) 186, 244
Hin1II CATG 3 cut(s) 56, 242, 260
HindIII AAGCTT 1 cut(s) 121
HpaII CCGG 2 cut(s) 186, 244
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 3 cut(s) 45, 174, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 3 cut(s) 56, 242, 260
KroI GCCGGC 1 cut(s) 243
KroNI GCCGGC 1 cut(s) 245
Kzo9I GATC 2 cut(s) 161, 197
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 6 cut(s) 144, 177, 186, 199, 216, 257
Lsp1109I GCAGC 2 cut(s) 18, 21
MaeI CTAG 2 cut(s) 72, 138
MalI GATC 2 cut(s) 163, 199
MboI GATC 2 cut(s) 161, 197
MboII GAAGA 2 cut(s) 125, 232
MflI RGATCY 2 cut(s) 161, 197
MnlI CCTC 6 cut(s) 134, 175, 219, 227, 258, 282
MroNI GCCGGC 1 cut(s) 243
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 255
MspI CCGG 2 cut(s) 186, 244
MspR9I CCNGG 1 cut(s) 186
Mva1269I GAATGC 2 cut(s) 45, 102
MwoI GCNNNNNNNGC 1 cut(s) 106
NaeI GCCGGC 1 cut(s) 245
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 161, 197
NgoMIV GCCGGC 1 cut(s) 243
NlaIII CATG 3 cut(s) 56, 242, 260
NlaIV GGNNCC 2 cut(s) 163, 285
NspI RCATGY 1 cut(s) 56
PciI ACATGT 1 cut(s) 52
PctI GAATGC 2 cut(s) 45, 102
PdiI GCCGGC 1 cut(s) 245
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 2 cut(s) 33, 36
PscI ACATGT 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 163, 285
PsuI RGATCY 2 cut(s) 161, 197
RigI GGCCGGCC 1 cut(s) 247
RsaI GTAC 3 cut(s) 57, 81, 190
RsaNI GTAC 3 cut(s) 56, 80, 189
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 2 cut(s) 32, 35
Sau3AI GATC 2 cut(s) 161, 197
ScaI AGTACT 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 186
SetI ASST 4 cut(s) 73, 125, 145, 179
SmiMI CAYNNNNRTG 1 cut(s) 255
SsiI CCGC 1 cut(s) 195
SspI AATATT 1 cut(s) 314
SspMI CTAG 2 cut(s) 72, 138
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 129
TatI WGTACW 2 cut(s) 55, 79
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseI GCWGC 2 cut(s) 31, 34
TspDTI ATGAA 1 cut(s) 119
Van91I CCANNNNNTGG 1 cut(s) 158
XceI RCATGY 1 cut(s) 56
XspI CTAG 2 cut(s) 72, 138
ZrmI AGTACT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.